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PMC:3320587 / 41009-41265 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15140 245-255 NN denotes expression
T15139 240-244 NN denotes gene
T15138 234-239 NN denotes NFAT5
T15137 231-233 IN denotes of
T15136 219-230 NN denotes stimulation
T15135 215-218 NN denotes MTb
T15134 211-214 IN denotes for
T15133 202-210 VB denotes required
T15132 198-201 VB denotes are
T15131 193-197 WDT denotes that
T15130 185-192 NN denotes pathway
T15129 181-184 NN denotes TLR
T15128 177-180 DT denotes the
T15127 174-176 IN denotes in
T15126 164-173 NN denotes molecules
T15125 154-163 VB denotes signaling
T15124 145-153 JJ denotes specific
T15123 141-144 IN denotes for
T15122 129-140 NN denotes requirement
T15121 125-128 DT denotes the
T15120 112-124 VB denotes investigated
T15119 107-111 RB denotes next
T15118 104-106 PRP denotes we
T15117 102-103 -COMMA- denotes ,
T15116 91-102 NN denotes replication
T15115 85-90 NN denotes HIV-1
T15114 73-84 JJ denotes MTb-induced
T15113 71-72 -COMMA- denotes ,
T15112 56-71 JJ denotes NFAT5-dependent
T15111 45-55 VB denotes underlying
T15110 34-44 NN denotes mechanisms
T15109 25-33 JJ denotes cellular
T15108 21-24 DT denotes the
T15107 12-20 VB denotes decipher
T15106 9-11 TO denotes to
T15105 3-8 VB denotes begin
T15104 0-2 TO denotes To
R10992 T15105 T15104 arg1Of begin,To
R10993 T15107 T15105 arg2Of decipher,begin
R10994 T15107 T15106 arg1Of decipher,to
R10995 T15110 T15107 arg2Of mechanisms,decipher
R10996 T15110 T15108 arg1Of mechanisms,the
R10997 T15110 T15109 arg1Of mechanisms,cellular
R10998 T15110 T15111 arg1Of mechanisms,underlying
R10999 T15112 T15113 arg1Of NFAT5-dependent,","
R11000 T15114 T15113 arg2Of MTb-induced,","
R11001 T15116 T15111 arg2Of replication,underlying
R11002 T15116 T15112 arg1Of replication,NFAT5-dependent
R11003 T15116 T15114 arg1Of replication,MTb-induced
R11004 T15116 T15115 arg1Of replication,HIV-1
R11005 T15118 T15105 arg1Of we,begin
R11006 T15118 T15107 arg1Of we,decipher
R11007 T15118 T15120 arg1Of we,investigated
R11008 T15120 T15104 modOf investigated,To
R11009 T15120 T15117 arg1Of investigated,","
R11010 T15120 T15119 arg1Of investigated,next
R11011 T15122 T15120 arg2Of requirement,investigated
R11012 T15122 T15121 arg1Of requirement,the
R11013 T15122 T15123 arg1Of requirement,for
R11014 T15126 T15123 arg2Of molecules,for
R11015 T15126 T15124 arg1Of molecules,specific
R11016 T15126 T15125 arg1Of molecules,signaling
R11017 T15126 T15127 arg1Of molecules,in
R11018 T15126 T15131 arg1Of molecules,that
R11019 T15126 T15132 arg1Of molecules,are
R11020 T15126 T15133 arg2Of molecules,required
R11021 T15130 T15127 arg2Of pathway,in
R11022 T15130 T15128 arg1Of pathway,the
R11023 T15130 T15129 arg1Of pathway,TLR
R11024 T15133 T15132 arg2Of required,are
R11025 T15133 T15134 arg1Of required,for
R11026 T15136 T15134 arg2Of stimulation,for
R11027 T15136 T15135 arg1Of stimulation,MTb
R11028 T15136 T15137 arg1Of stimulation,of
R11029 T15140 T15137 arg2Of expression,of
R11030 T15140 T15138 arg1Of expression,NFAT5
R11031 T15140 T15139 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14907 234-239 Protein denotes NFAT5
T14906 56-61 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15606 234-239 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T15605 56-61 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T14972 25-33 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T14969 154-163 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T14960 240-255 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

sentences

Id Subject Object Predicate Lexical cue
T14767 0-256 Sentence denotes To begin to decipher the cellular mechanisms underlying NFAT5-dependent, MTb-induced HIV-1 replication, we next investigated the requirement for specific signaling molecules in the TLR pathway that are required for MTb stimulation of NFAT5 gene expression.
T240 0-256 Sentence denotes To begin to decipher the cellular mechanisms underlying NFAT5-dependent, MTb-induced HIV-1 replication, we next investigated the requirement for specific signaling molecules in the TLR pathway that are required for MTb stimulation of NFAT5 gene expression.

simple1

Id Subject Object Predicate Lexical cue
T14987 234-239 Protein denotes NFAT5
T14986 56-61 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16741 245-255 Gene_expression denotes expression
T16687 234-239 Protein denotes NFAT5
T16686 56-61 Protein denotes NFAT5
R12364 T16687 T16741 themeOf NFAT5,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15824 245-255 Gene_expression denotes expression
T15770 234-239 Protein denotes NFAT5
T15769 56-61 Protein denotes NFAT5
R11604 T15770 T15824 themeOf NFAT5,expression

DLUT931

Id Subject Object Predicate Lexical cue
T15710 202-210 Positive_regulation denotes required
T15709 245-255 Gene_expression denotes expression
T15655 234-239 Protein denotes NFAT5
T15654 56-61 Protein denotes NFAT5
R11552 T15709 T15710 themeOf expression,required
R11502 T15655 T15709 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16904 231-255 Gene_expression denotes of NFAT5 gene expression
T16903 215-255 Positive_regulation denotes MTb stimulation of NFAT5 gene expression
T16874 73-84 Protein denotes MTb-induced
T16873 21-102 Protein denotes the cellular mechanisms underlying NFAT5-dependent, MTb-induced HIV-1 replication
T16860 234-239 Protein denotes NFAT5
T16847 164-173 Entity denotes molecules
T16819 215-218 Protein denotes MTb
R12435 T16819 T16903 causeOf MTb,MTb stimulation of NFAT5 gene expression
R12449 T16860 T16904 themeOf NFAT5,of NFAT5 gene expression
R12460 T16904 T16903 themeOf of NFAT5 gene expression,MTb stimulation of NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16200 255-256 . denotes .
T16199 245-255 NN denotes expression
T16198 240-244 NN denotes gene
T16197 234-239 CD denotes NFAT5
T16196 231-233 IN denotes of
T16195 219-230 NN denotes stimulation
T16194 215-218 NNP denotes MTb
T16193 211-214 IN denotes for
T16192 202-210 VBN denotes required
T16191 198-201 VBP denotes are
T16190 193-197 WDT denotes that
T16189 185-192 NN denotes pathway
T16188 181-184 NNP denotes TLR
T16187 177-180 DT denotes the
T16186 174-176 IN denotes in
T16185 164-173 NNS denotes molecules
T16184 154-163 VBG denotes signaling
T16183 145-153 JJ denotes specific
T16182 141-144 IN denotes for
T16181 129-140 NN denotes requirement
T16180 125-128 DT denotes the
T16179 112-124 VBD denotes investigated
T16178 107-111 JJ denotes next
T16177 104-106 PRP denotes we
T16176 102-103 , denotes ,
T16175 91-102 NN denotes replication
T16174 85-90 NN denotes HIV-1
T16173 73-84 JJ denotes MTb-induced
T16172 71-72 , denotes ,
T16171 56-71 JJ denotes NFAT5-dependent
T16170 45-55 VBG denotes underlying
T16169 34-44 NNS denotes mechanisms
T16168 25-33 JJ denotes cellular
T16167 21-24 DT denotes the
T16166 12-20 VB denotes decipher
T16165 9-11 TO denotes to
T16164 3-8 VB denotes begin
T16163 0-2 TO denotes To
R11842 T16163 T16164 aux To,begin
R11844 T16165 T16166 aux to,decipher
R11845 T16166 T16164 xcomp decipher,begin
R11846 T16167 T16169 det the,mechanisms
R11847 T16168 T16169 amod cellular,mechanisms
R11848 T16169 T16166 dobj mechanisms,decipher
R11849 T16170 T16169 acl underlying,mechanisms
R11850 T16171 T16175 amod NFAT5-dependent,replication
R11851 T16172 T16175 punct ",",replication
R11852 T16173 T16175 amod MTb-induced,replication
R11853 T16174 T16175 compound HIV-1,replication
R11854 T16175 T16170 dobj replication,underlying
R11855 T16176 T16179 punct ",",investigated
R11856 T16177 T16179 nsubj we,investigated
R11857 T16178 T16179 advmod next,investigated
R11859 T16180 T16181 det the,requirement
R11860 T16181 T16179 dobj requirement,investigated
R11861 T16182 T16181 prep for,requirement
R11862 T16183 T16185 amod specific,molecules
R11863 T16184 T16185 amod signaling,molecules
R11864 T16185 T16182 pobj molecules,for
R11865 T16186 T16185 prep in,molecules
R11866 T16187 T16189 det the,pathway
R11867 T16188 T16189 compound TLR,pathway
R11868 T16189 T16186 pobj pathway,in
R11869 T16190 T16192 nsubjpass that,required
R11870 T16191 T16192 auxpass are,required
R11871 T16192 T16185 relcl required,molecules
R11872 T16193 T16192 prep for,required
R11873 T16194 T16195 compound MTb,stimulation
R11874 T16195 T16193 pobj stimulation,for
R11875 T16196 T16195 prep of,stimulation
R11876 T16197 T16199 nummod NFAT5,expression
R11877 T16198 T16199 compound gene,expression
R11878 T16199 T16196 pobj expression,of
R11879 T16200 T16179 punct .,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15950 245-255 Gene_expression denotes expression
T15949 234-244 Protein denotes NFAT5 gene
T15948 181-184 Protein denotes TLR
T15947 56-61 Protein denotes NFAT5
R11698 T15949 T15950 themeOf NFAT5 gene,expression

testone

Id Subject Object Predicate Lexical cue
T14597 245-255 Gene_expression denotes expression
T14544 234-239 Protein denotes NFAT5
T14543 56-61 Protein denotes NFAT5
R10812 T14544 T14597 themeOf NFAT5,expression

test3

Id Subject Object Predicate Lexical cue
T14688 234-239 Protein denotes NFAT5
T14687 56-61 Protein denotes NFAT5
T14633 234-239 Protein denotes NFAT5
T14632 56-61 Protein denotes NFAT5