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PMC:3320587 / 39741-40931 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T26475 957-961 NN denotes days
T26474 954-956 IN denotes at
T26473 944-953 VB denotes collected
T26472 939-943 VB denotes were
T26471 926-938 NN denotes supernatants
T26470 918-925 NN denotes Culture
T26469 915-916 -RRB- denotes )
T26468 902-915 NN denotes cells∶bacilli
T26467 897-901 CD denotes 10∶1
T26466 896-897 -LRB- denotes (
T26465 888-895 NN denotes CDC1551
T26464 881-887 NN denotes strain
T26463 877-880 NN denotes MTb
T26462 872-876 IN denotes with
T26461 860-871 JJ denotes co-infected
T26460 858-859 -RRB- denotes )
T26459 857-858 NN denotes C
T26458 856-857 -LRB- denotes (
T26457 853-855 CC denotes or
T26456 847-852 RB denotes alone
T26455 841-846 NN denotes virus
T26454 836-840 IN denotes with
T26453 827-835 VB denotes infected
T26452 822-826 VB denotes left
T26451 820-821 -RRB- denotes )
T26450 819-820 NN denotes B
T26449 818-819 -LRB- denotes (
T26448 813-817 RB denotes then
T26447 808-812 VB denotes were
T26446 802-807 NN denotes Cells
T26445 782-801 NN denotes HIV-198IN22-N5-Mut.
T26444 779-781 CC denotes or
T26443 764-778 NN denotes HIV-198IN22–WT
T26442 761-763 IN denotes of
T26441 754-760 NN denotes TCID50
T26440 749-753 CD denotes 1000
T26439 744-748 IN denotes with
T26438 735-743 VB denotes infected
T26437 730-734 VB denotes were
T26436 723-729 NN denotes donors
T26435 716-722 JJ denotes normal
T26434 711-715 CD denotes four
T26433 706-710 IN denotes from
T26432 701-705 NN denotes PBMC
T26431 691-699 NN denotes sequence
T26430 682-690 JJ denotes proviral
T26429 667-681 NN denotes HIV-198IN22-WT
T26428 663-666 DT denotes the
T26427 660-662 IN denotes of
T26426 656-659 NN denotes LTR
T26425 653-655 NN denotes 3′
T26424 649-652 DT denotes the
T26423 644-648 IN denotes into
T26422 633-643 VB denotes introduced
T26421 628-632 VB denotes were
T26420 618-627 NN denotes Mutations
T26419 610-616 NN denotes blocks
T26418 607-609 IN denotes in
T26417 601-606 VB denotes shown
T26416 598-600 VB denotes is
T26415 596-597 -COMMA- denotes ,
T26414 592-596 NN denotes site
T26413 588-591 PRP-DOLLAR- denotes its
T26412 585-587 TO denotes to
T26411 577-584 NN denotes binding
T26410 571-576 NN denotes NFAT5
T26409 567-570 IN denotes for
T26408 557-566 JJ denotes important
T26407 554-556 VB denotes is
T26406 548-553 WDT denotes which
T26405 546-547 -COMMA- denotes ,
T26404 539-546 NN denotes adenine
T26403 530-538 JJ denotes terminal
T26402 527-529 NN denotes 3′
T26401 520-526 JJ denotes unique
T26400 516-519 DT denotes The
T26399 509-514 NN denotes sites
T26398 501-508 NN denotes binding
T26397 495-500 NN denotes NFAT5
T26396 491-494 CD denotes two
T26395 487-490 CC denotes and
T26394 481-486 NN denotes NF-κB
T26393 475-480 CD denotes three
T26392 466-474 VB denotes contains
T26391 461-465 RB denotes here
T26390 452-460 VB denotes analyzed
T26389 444-451 NN denotes isolate
T26388 432-443 NN denotes HIV-198IN22
T26387 428-431 DT denotes The
T26386 412-426 NN denotes HIV-198IN22-WT
T26385 409-411 IN denotes of
T26384 404-408 DT denotes that
T26383 394-403 IN denotes alongside
T26382 388-393 VB denotes shown
T26381 385-387 VB denotes is
T26380 376-384 NN denotes sequence
T26379 372-375 NN denotes LTR
T26378 370-371 -RRB- denotes )
T26377 364-370 NN denotes N5-Mut
T26376 352-363 NN denotes HIV-198IN22
T26375 351-352 -LRB- denotes (
T26374 344-350 JJ denotes mutant
T26373 339-343 NN denotes site
T26372 331-338 NN denotes binding
T26371 325-330 NN denotes NFAT5
T26370 321-324 DT denotes The
T26369 305-319 NN denotes HIV-198IN22-WT
T26368 303-304 NN denotes C
T26367 295-302 NN denotes subtype
T26366 292-294 IN denotes of
T26365 288-291 NN denotes LTR
T26364 284-287 DT denotes the
T26363 279-283 IN denotes into
T26362 268-278 VB denotes introduced
T26361 263-267 VB denotes were
T26360 253-262 NN denotes mutations
T26359 248-252 NN denotes site
T26358 240-247 NN denotes binding
T26357 234-239 NN denotes NFAT5
T26356 227-232 NN denotes clone
T26355 217-226 JJ denotes molecular
T26354 206-216 JJ denotes infectious
T26353 204-205 NN denotes C
T26352 196-203 NN denotes subtype
T26351 190-195 NN denotes HIV-1
T26350 187-189 DT denotes an
T26349 184-186 IN denotes in
T26348 179-183 NN denotes site
T26347 171-178 NN denotes binding
T26346 165-170 NN denotes NFAT5
T26345 161-164 DT denotes the
T26344 158-160 IN denotes of
T26343 149-157 NN denotes Mutation
T26342 147-148 -RRB- denotes )
T26341 146-147 NN denotes A
T26340 145-146 -LRB- denotes (
T26339 132-143 NN denotes replication
T26338 126-131 JJ denotes viral
T26337 114-125 JJ denotes MTb-induced
T26336 106-113 VB denotes impairs
T26335 92-105 RB denotes significantly
T26334 90-91 NN denotes C
T26333 82-89 NN denotes subtype
T26332 76-81 NN denotes HIV-1
T26331 73-75 IN denotes in
T26330 68-72 NN denotes site
T26329 62-67 NN denotes NFAT5
T26328 58-61 DT denotes the
T26327 55-57 IN denotes of
T26326 44-54 NN denotes Disruption
T26514 1177-1189 NN denotes co-infection
T26513 1173-1176 NN denotes MTb
T26512 1170-1172 IN denotes of
T26511 1161-1169 NN denotes presence
T26510 1157-1160 DT denotes the
T26509 1154-1156 IN denotes in
T26508 1152-1153 -RRB- denotes )
T26507 1148-1152 CD denotes 0.05
T26506 1147-1148 SYM denotes <
T26505 1146-1147 NN denotes p
T26504 1144-1145 -COMMA- denotes ,
T26503 1143-1144 SYM denotes *
T26502 1142-1143 -LRB- denotes (
T26501 1127-1141 NN denotes HIV-198IN22–WT
T26500 1124-1126 TO denotes to
T26499 1113-1123 NN denotes comparison
T26498 1110-1112 IN denotes in
T26497 1095-1109 NN denotes post-infection
T26496 1092-1094 CD denotes 11
T26495 1088-1091 NN denotes day
T26494 1085-1087 IN denotes at
T26493 1077-1084 VB denotes reduced
T26492 1063-1076 RB denotes significantly
T26491 1059-1062 VB denotes was
T26490 1040-1058 NN denotes HIV-198IN22-N5-Mut
T26489 1037-1039 IN denotes of
T26488 1025-1036 NN denotes Replication
T26487 1015-1023 VB denotes measured
T26486 1010-1014 VB denotes were
T26485 1003-1009 NN denotes levels
T26484 999-1002 NN denotes p24
T26483 993-998 JJ denotes viral
T26482 989-992 CC denotes and
T26481 974-988 JJ denotes post-infection
T26480 971-973 CD denotes 11
T26479 967-970 CC denotes and
T26478 965-966 CD denotes 7
T26477 963-964 -COMMA- denotes ,
T26476 962-963 CD denotes 3
R19133 T26326 T26327 arg1Of Disruption,of
R19134 T26326 T26331 arg1Of Disruption,in
R19135 T26326 T26336 arg1Of Disruption,impairs
R19136 T26330 T26327 arg2Of site,of
R19137 T26330 T26328 arg1Of site,the
R19138 T26330 T26329 arg1Of site,NFAT5
R19139 T26334 T26331 arg2Of C,in
R19140 T26334 T26332 arg1Of C,HIV-1
R19141 T26334 T26333 arg1Of C,subtype
R19142 T26336 T26335 arg1Of impairs,significantly
R19143 T26339 T26336 arg2Of replication,impairs
R19144 T26339 T26337 arg1Of replication,MTb-induced
R19145 T26339 T26338 arg1Of replication,viral
R19146 T26341 T26340 arg2Of A,(
R19147 T26342 T26340 arg3Of ),(
R19148 T26343 T26340 arg1Of Mutation,(
R19149 T26343 T26344 arg1Of Mutation,of
R19150 T26343 T26349 arg1Of Mutation,in
R19151 T26348 T26344 arg2Of site,of
R19152 T26348 T26345 arg1Of site,the
R19153 T26348 T26346 arg1Of site,NFAT5
R19154 T26348 T26347 arg1Of site,binding
R19155 T26356 T26349 arg2Of clone,in
R19156 T26356 T26350 arg1Of clone,an
R19157 T26356 T26351 arg1Of clone,HIV-1
R19158 T26356 T26352 arg1Of clone,subtype
R19159 T26356 T26353 arg1Of clone,C
R19160 T26356 T26354 arg1Of clone,infectious
R19161 T26356 T26355 arg1Of clone,molecular
R19162 T26360 T26357 arg1Of mutations,NFAT5
R19163 T26360 T26358 arg1Of mutations,binding
R19164 T26360 T26359 arg1Of mutations,site
R19165 T26360 T26361 arg1Of mutations,were
R19166 T26360 T26362 arg2Of mutations,introduced
R19167 T26362 T26361 arg2Of introduced,were
R19168 T26362 T26363 arg1Of introduced,into
R19169 T26365 T26363 arg2Of LTR,into
R19170 T26365 T26364 arg1Of LTR,the
R19171 T26365 T26366 arg1Of LTR,of
R19172 T26369 T26366 arg2Of HIV-198IN22-WT,of
R19173 T26369 T26367 arg1Of HIV-198IN22-WT,subtype
R19174 T26369 T26368 arg1Of HIV-198IN22-WT,C
R19175 T26376 T26375 arg2Of HIV-198IN22,(
R19176 T26376 T26377 arg1Of HIV-198IN22,N5-Mut
R19177 T26378 T26375 arg3Of ),(
R19178 T26380 T26370 arg1Of sequence,The
R19179 T26380 T26371 arg1Of sequence,NFAT5
R19180 T26380 T26372 arg1Of sequence,binding
R19181 T26380 T26373 arg1Of sequence,site
R19182 T26380 T26374 arg1Of sequence,mutant
R19183 T26380 T26375 arg1Of sequence,(
R19184 T26380 T26379 arg1Of sequence,LTR
R19185 T26380 T26381 arg1Of sequence,is
R19186 T26380 T26382 arg2Of sequence,shown
R19187 T26382 T26381 arg2Of shown,is
R19188 T26382 T26383 arg1Of shown,alongside
R19189 T26384 T26383 arg2Of that,alongside
R19190 T26384 T26385 arg1Of that,of
R19191 T26386 T26385 arg2Of HIV-198IN22-WT,of
R19192 T26389 T26387 arg1Of isolate,The
R19193 T26389 T26388 arg1Of isolate,HIV-198IN22
R19194 T26389 T26390 arg2Of isolate,analyzed
R19195 T26389 T26392 arg1Of isolate,contains
R19196 T26390 T26391 arg1Of analyzed,here
R19197 T26394 T26395 arg1Of NF-κB,and
R19198 T26396 T26395 arg2Of two,and
R19199 T26399 T26392 arg2Of sites,contains
R19200 T26399 T26393 arg1Of sites,three
R19201 T26399 T26394 arg1Of sites,NF-κB
R19202 T26399 T26396 arg1Of sites,two
R19203 T26399 T26397 arg1Of sites,NFAT5
R19204 T26399 T26398 arg1Of sites,binding
R19205 T26404 T26400 arg1Of adenine,The
R19206 T26404 T26401 arg1Of adenine,unique
R19207 T26404 T26402 arg1Of adenine,3′
R19208 T26404 T26403 arg1Of adenine,terminal
R19209 T26404 T26405 arg1Of adenine,","
R19210 T26404 T26406 arg1Of adenine,which
R19211 T26404 T26407 arg1Of adenine,is
R19212 T26404 T26408 arg1Of adenine,important
R19213 T26404 T26416 arg1Of adenine,is
R19214 T26404 T26417 arg2Of adenine,shown
R19215 T26408 T26407 arg2Of important,is
R19216 T26408 T26409 arg1Of important,for
R19217 T26411 T26409 arg2Of binding,for
R19218 T26411 T26410 arg1Of binding,NFAT5
R19219 T26411 T26412 arg1Of binding,to
R19220 T26414 T26412 arg2Of site,to
R19221 T26414 T26413 arg1Of site,its
R19222 T26417 T26415 arg1Of shown,","
R19223 T26417 T26416 arg2Of shown,is
R19224 T26417 T26418 arg1Of shown,in
R19225 T26419 T26418 arg2Of blocks,in
R19226 T26420 T26421 arg1Of Mutations,were
R19227 T26420 T26422 arg2Of Mutations,introduced
R19228 T26422 T26421 arg2Of introduced,were
R19229 T26422 T26423 arg1Of introduced,into
R19230 T26426 T26423 arg2Of LTR,into
R19231 T26426 T26424 arg1Of LTR,the
R19232 T26426 T26425 arg1Of LTR,3′
R19233 T26426 T26427 arg1Of LTR,of
R19234 T26431 T26427 arg2Of sequence,of
R19235 T26431 T26428 arg1Of sequence,the
R19236 T26431 T26429 arg1Of sequence,HIV-198IN22-WT
R19237 T26431 T26430 arg1Of sequence,proviral
R19238 T26432 T26433 arg1Of PBMC,from
R19239 T26432 T26437 arg1Of PBMC,were
R19240 T26432 T26438 arg2Of PBMC,infected
R19241 T26436 T26433 arg2Of donors,from
R19242 T26436 T26434 arg1Of donors,four
R19243 T26436 T26435 arg1Of donors,normal
R19244 T26438 T26437 arg2Of infected,were
R19245 T26438 T26439 arg1Of infected,with
R19246 T26441 T26439 arg2Of TCID50,with
R19247 T26441 T26440 arg1Of TCID50,1000
R19248 T26443 T26442 arg1Of HIV-198IN22–WT,of
R19249 T26443 T26444 arg1Of HIV-198IN22–WT,or
R19250 T26444 T26447 arg1Of or,were
R19251 T26446 T26444 arg2Of Cells,or
R19252 T26446 T26445 arg1Of Cells,HIV-198IN22-N5-Mut.
R19253 T26447 T26437 modOf were,were
R19254 T26447 T26448 arg1Of were,then
R19255 T26450 T26447 arg2Of B,were
R19256 T26450 T26449 arg2Of B,(
R19257 T26450 T26452 arg2Of B,left
R19258 T26450 T26453 arg2Of B,infected
R19259 T26450 T26461 arg1Of B,co-infected
R19260 T26451 T26449 arg3Of ),(
R19261 T26453 T26454 arg1Of infected,with
R19262 T26455 T26456 arg1Of virus,alone
R19263 T26455 T26457 arg1Of virus,or
R19264 T26457 T26454 arg2Of or,with
R19265 T26459 T26457 arg2Of C,or
R19266 T26459 T26458 arg2Of C,(
R19267 T26460 T26458 arg3Of ),(
R19268 T26461 T26462 arg1Of co-infected,with
R19269 T26465 T26462 arg2Of CDC1551,with
R19270 T26465 T26463 arg1Of CDC1551,MTb
R19271 T26465 T26464 arg1Of CDC1551,strain
R19272 T26465 T26466 arg1Of CDC1551,(
R19273 T26468 T26466 arg2Of cells∶bacilli,(
R19274 T26468 T26467 arg1Of cells∶bacilli,10∶1
R19275 T26469 T26466 arg3Of ),(
R19276 T26471 T26470 arg1Of supernatants,Culture
R19277 T26471 T26472 arg1Of supernatants,were
R19278 T26471 T26473 arg2Of supernatants,collected
R19279 T26473 T26472 arg2Of collected,were
R19280 T26473 T26474 arg1Of collected,at
R19281 T26476 T26474 arg2Of 3,at
R19282 T26476 T26475 arg1Of 3,days
R19283 T26476 T26477 arg1Of 3,","
R19284 T26476 T26486 modOf 3,were
R19285 T26478 T26479 arg1Of 7,and
R19286 T26479 T26481 arg1Of and,post-infection
R19287 T26479 T26483 arg1Of and,viral
R19288 T26480 T26479 arg2Of 11,and
R19289 T26481 T26482 arg1Of post-infection,and
R19290 T26483 T26482 arg2Of viral,and
R19291 T26485 T26478 arg1Of levels,7
R19292 T26485 T26480 arg1Of levels,11
R19293 T26485 T26484 arg1Of levels,p24
R19294 T26485 T26486 arg1Of levels,were
R19295 T26485 T26487 arg2Of levels,measured
R19296 T26487 T26486 arg2Of measured,were
R19297 T26488 T26489 arg1Of Replication,of
R19298 T26488 T26491 arg1Of Replication,was
R19299 T26488 T26493 arg2Of Replication,reduced
R19300 T26490 T26489 arg2Of HIV-198IN22-N5-Mut,of
R19301 T26493 T26491 arg2Of reduced,was
R19302 T26493 T26492 arg1Of reduced,significantly
R19303 T26493 T26494 arg1Of reduced,at
R19304 T26493 T26498 arg1Of reduced,in
R19305 T26497 T26494 arg2Of post-infection,at
R19306 T26497 T26495 arg1Of post-infection,day
R19307 T26497 T26496 arg1Of post-infection,11
R19308 T26499 T26498 arg2Of comparison,in
R19309 T26499 T26500 arg1Of comparison,to
R19310 T26501 T26500 arg2Of HIV-198IN22–WT,to
R19311 T26501 T26502 arg1Of HIV-198IN22–WT,(
R19312 T26501 T26509 arg1Of HIV-198IN22–WT,in
R19313 T26503 T26504 arg1Of *,","
R19314 T26505 T26504 arg2Of p,","
R19315 T26505 T26506 arg1Of p,<
R19316 T26507 T26502 arg2Of 0.05,(
R19317 T26507 T26503 arg1Of 0.05,*
R19318 T26508 T26502 arg3Of ),(
R19319 T26511 T26509 arg2Of presence,in
R19320 T26511 T26510 arg1Of presence,the
R19321 T26511 T26512 arg1Of presence,of
R19322 T26514 T26512 arg2Of co-infection,of
R19323 T26514 T26513 arg1Of co-infection,MTb

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T26312 999-1002 Protein denotes p24
T26311 571-576 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26524 999-1002 http://www.uniprot.org/uniprot/P03366 denotes p24
T26523 999-1002 http://www.uniprot.org/uniprot/P04585 denotes p24
T26522 999-1002 http://www.uniprot.org/uniprot/P12497 denotes p24
T26521 999-1002 http://www.uniprot.org/uniprot/P04591 denotes p24
T26520 571-576 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T26519 495-500 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T26518 325-330 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T26517 234-239 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T26516 165-170 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T26515 62-67 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T26315 979-998 http://purl.obolibrary.org/obo/GO_0016032 denotes infection and viral
T26314 126-143 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T26313 126-143 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

GO-MF

Id Subject Object Predicate Lexical cue
T26321 577-584 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T26320 501-508 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T26319 331-338 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T26318 240-247 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T26317 171-178 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T26306 1025-1190 Sentence denotes Replication of HIV-198IN22-N5-Mut was significantly reduced at day 11 post-infection in comparison to HIV-198IN22–WT (*, p<0.05) in the presence of MTb co-infection.
T26305 918-1024 Sentence denotes Culture supernatants were collected at days 3, 7 and 11 post-infection and viral p24 levels were measured.
T26304 701-917 Sentence denotes PBMC from four normal donors were infected with 1000 TCID50 of HIV-198IN22–WT or HIV-198IN22-N5-Mut. Cells were then (B) left infected with virus alone or (C) co-infected with MTb strain CDC1551 (10∶1 cells∶bacilli).
T26303 618-700 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-198IN22-WT proviral sequence.
T26302 516-617 Sentence denotes The unique 3′ terminal adenine, which is important for NFAT5 binding to its site, is shown in blocks.
T26301 428-515 Sentence denotes The HIV-198IN22 isolate analyzed here contains three NF-κB and two NFAT5 binding sites.
T26300 321-427 Sentence denotes The NFAT5 binding site mutant (HIV-198IN22 N5-Mut) LTR sequence is shown alongside that of HIV-198IN22-WT.
T26299 234-320 Sentence denotes NFAT5 binding site mutations were introduced into the LTR of subtype C HIV-198IN22-WT.
T26298 145-233 Sentence denotes (A) Mutation of the NFAT5 binding site in an HIV-1 subtype C infectious molecular clone.
T26297 44-144 Sentence denotes Disruption of the NFAT5 site in HIV-1 subtype C significantly impairs MTb-induced viral replication.
T228 0-144 Sentence denotes 10.1371/journal.ppat.1002620.g006 Figure 6 Disruption of the NFAT5 site in HIV-1 subtype C significantly impairs MTb-induced viral replication.
T229 145-233 Sentence denotes (A) Mutation of the NFAT5 binding site in an HIV-1 subtype C infectious molecular clone.
T230 234-320 Sentence denotes NFAT5 binding site mutations were introduced into the LTR of subtype C HIV-198IN22-WT.
T231 321-427 Sentence denotes The NFAT5 binding site mutant (HIV-198IN22 N5-Mut) LTR sequence is shown alongside that of HIV-198IN22-WT.
T232 428-515 Sentence denotes The HIV-198IN22 isolate analyzed here contains three NF-κB and two NFAT5 binding sites.
T233 516-617 Sentence denotes The unique 3′ terminal adenine, which is important for NFAT5 binding to its site, is shown in blocks.
T234 618-700 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-198IN22-WT proviral sequence.
T235 701-801 Sentence denotes PBMC from four normal donors were infected with 1000 TCID50 of HIV-198IN22–WT or HIV-198IN22-N5-Mut.
T236 802-917 Sentence denotes Cells were then (B) left infected with virus alone or (C) co-infected with MTb strain CDC1551 (10∶1 cells∶bacilli).
T237 918-1024 Sentence denotes Culture supernatants were collected at days 3, 7 and 11 post-infection and viral p24 levels were measured.
T238 1025-1190 Sentence denotes Replication of HIV-198IN22-N5-Mut was significantly reduced at day 11 post-infection in comparison to HIV-198IN22–WT (*, p<0.05) in the presence of MTb co-infection.

ICD10

Id Subject Object Predicate Lexical cue
T26316 979-998 http://purl.bioontology.org/ontology/ICD10/B34.9 denotes infection and viral

simple1

Id Subject Object Predicate Lexical cue
T26325 999-1002 Protein denotes p24
T26324 571-576 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T26775 557-566 Positive_regulation denotes important
T26774 999-1002 Protein denotes p24
T26773 571-576 Protein denotes NFAT5
T26776 577-584 Binding denotes binding
R19548 T26773 T26776 themeOf NFAT5,binding
R19549 T26776 T26775 themeOf binding,important

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26534 577-584 Binding denotes binding
T26533 557-566 Positive_regulation denotes important
T26532 999-1002 Protein denotes p24
T26531 571-576 Protein denotes NFAT5
R19326 T26531 T26534 themeOf NFAT5,binding
R19327 T26534 T26533 themeOf binding,important

DLUT931

Id Subject Object Predicate Lexical cue
T26528 557-566 Positive_regulation denotes important
T26527 577-584 Binding denotes binding
T26526 999-1002 Protein denotes p24
T26525 571-576 Protein denotes NFAT5
R19324 T26525 T26527 themeOf NFAT5,binding
R19325 T26527 T26528 themeOf binding,important

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T26803 1173-1189 Regulation denotes MTb co-infection
T26802 234-262 Binding denotes NFAT5 binding site mutations
T26801 158-183 Binding denotes of the NFAT5 binding site
T26800 321-371 Binding denotes The NFAT5 binding site mutant (HIV-198IN22 N5-Mut)
T26799 62-67 Protein denotes NFAT5
T26798 701-729 Entity denotes PBMC from four normal donors
T26797 234-262 Entity denotes NFAT5 binding site mutations
T26796 114-125 Protein denotes MTb-induced
T26795 516-547 Entity denotes The unique 3′ terminal adenine,
T26794 158-183 Entity denotes of the NFAT5 binding site
T26793 475-514 Entity denotes three NF-κB and two NFAT5 binding sites
T26792 55-72 Entity denotes of the NFAT5 site
T26791 321-371 Protein denotes The NFAT5 binding site mutant (HIV-198IN22 N5-Mut)
T26790 877-880 Protein denotes MTb
T26789 234-239 Protein denotes NFAT5
T26788 993-1023 Protein denotes viral p24 levels were measured
T26787 165-170 Protein denotes NFAT5
T26786 1146-1148 Entity denotes p<
T26785 1173-1176 Protein denotes MTb
T26784 339-343 Entity denotes site
T26783 802-807 Entity denotes Cells
T26782 352-370 Entity denotes HIV-198IN22 N5-Mut
T26781 495-500 Protein denotes NFAT5
T26780 585-597 Entity denotes to its site,
T26779 481-486 Protein denotes NF-κB
T26778 352-370 Protein denotes HIV-198IN22 N5-Mut
T26777 567-576 Protein denotes for NFAT5
R19550 T26785 T26803 themeOf MTb,MTb co-infection
R19551 T26791 T26800 themeOf The NFAT5 binding site mutant (HIV-198IN22 N5-Mut),The NFAT5 binding site mutant (HIV-198IN22 N5-Mut)
R19552 T26794 T26801 themeOf of the NFAT5 binding site,of the NFAT5 binding site

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26695 800-801 . denotes .
T26768 1161-1169 NN denotes presence
T26767 1157-1160 DT denotes the
T26766 1154-1156 IN denotes in
T26765 1152-1153 -RRB- denotes )
T26764 1148-1152 CD denotes 0.05
T26763 1147-1148 RB denotes <
T26762 1146-1147 VB denotes p
T26761 1144-1145 , denotes ,
T26760 1143-1144 SYM denotes *
T26759 1142-1143 -LRB- denotes (
T26758 1139-1141 NNP denotes WT
T26757 1127-1138 NNP denotes HIV-198IN22
T26756 1124-1126 TO denotes to
T26755 1113-1123 NN denotes comparison
T26754 1110-1112 IN denotes in
T26753 1095-1109 NN denotes post-infection
T26752 1092-1094 CD denotes 11
T26751 1088-1091 NN denotes day
T26750 1085-1087 IN denotes at
T26749 1077-1084 VBN denotes reduced
T26748 1063-1076 RB denotes significantly
T26747 1059-1062 VBD denotes was
T26746 1040-1058 NN denotes HIV-198IN22-N5-Mut
T26745 1037-1039 IN denotes of
T26744 1025-1036 NN denotes Replication
T26743 1023-1024 . denotes .
T26742 1015-1023 VBN denotes measured
T26741 1010-1014 VBD denotes were
T26740 1003-1009 NNS denotes levels
T26739 999-1002 JJ denotes p24
T26738 993-998 JJ denotes viral
T26737 989-992 CC denotes and
T26736 974-988 NN denotes post-infection
T26735 971-973 CD denotes 11
T26734 967-970 CC denotes and
T26733 965-966 CD denotes 7
T26732 963-964 , denotes ,
T26731 962-963 CD denotes 3
T26730 957-961 NNS denotes days
T26729 954-956 IN denotes at
T26728 944-953 VBN denotes collected
T26727 939-943 VBD denotes were
T26726 926-938 NNS denotes supernatants
T26725 918-925 NNP denotes Culture
T26724 916-917 . denotes .
T26723 915-916 -RRB- denotes )
T26722 908-915 NNS denotes bacilli
T26721 907-908 VBP denotes ∶
T26720 902-907 NNS denotes cells
T26719 900-901 CD denotes 1
T26718 899-900 NN denotes ∶
T26717 897-899 CD denotes 10
T26716 896-897 -LRB- denotes (
T26715 888-895 NNP denotes CDC1551
T26714 881-887 NN denotes strain
T26713 877-880 NNP denotes MTb
T26712 872-876 IN denotes with
T26711 860-871 VBN denotes co-infected
T26710 858-859 -RRB- denotes )
T26709 857-858 NNP denotes C
T26708 856-857 -LRB- denotes (
T26707 853-855 CC denotes or
T26706 847-852 RB denotes alone
T26705 841-846 NN denotes virus
T26704 836-840 IN denotes with
T26703 827-835 VBN denotes infected
T26702 822-826 VBD denotes left
T26701 820-821 -RRB- denotes )
T26700 819-820 NNP denotes B
T26699 818-819 -LRB- denotes (
T26698 813-817 RB denotes then
T26697 808-812 VBD denotes were
T26696 802-807 NNS denotes Cells
T26694 782-800 NNP denotes HIV-198IN22-N5-Mut
T26693 779-781 CC denotes or
T26692 776-778 NNP denotes WT
T26691 764-775 NN denotes HIV-198IN22
T26690 761-763 IN denotes of
T26689 754-760 CD denotes TCID50
T26688 749-753 CD denotes 1000
T26687 744-748 IN denotes with
T26686 735-743 VBN denotes infected
T26685 730-734 VBD denotes were
T26684 723-729 NNS denotes donors
T26683 716-722 JJ denotes normal
T26682 711-715 CD denotes four
T26681 706-710 IN denotes from
T26680 701-705 NNP denotes PBMC
T26679 699-700 . denotes .
T26678 691-699 NN denotes sequence
T26677 682-690 JJ denotes proviral
T26676 667-681 NNP denotes HIV-198IN22-WT
T26675 663-666 DT denotes the
T26674 660-662 IN denotes of
T26673 656-659 NNP denotes LTR
T26672 654-655 NN denotes ′
T26671 653-654 CD denotes 3
T26670 649-652 DT denotes the
T26669 644-648 IN denotes into
T26668 633-643 VBN denotes introduced
T26667 628-632 VBD denotes were
T26666 618-627 NNS denotes Mutations
T26665 616-617 . denotes .
T26664 610-616 NNS denotes blocks
T26663 607-609 IN denotes in
T26662 601-606 VBN denotes shown
T26661 598-600 VBZ denotes is
T26660 596-597 , denotes ,
T26659 592-596 NN denotes site
T26658 588-591 PRP$ denotes its
T26657 585-587 TO denotes to
T26656 577-584 JJ denotes binding
T26655 571-576 NNP denotes NFAT5
T26654 567-570 IN denotes for
T26653 557-566 JJ denotes important
T26652 554-556 VBZ denotes is
T26651 548-553 WDT denotes which
T26650 546-547 , denotes ,
T26649 539-546 NN denotes adenine
T26648 530-538 NN denotes terminal
T26647 528-529 NN denotes ′
T26646 527-528 CD denotes 3
T26645 520-526 JJ denotes unique
T26644 516-519 DT denotes The
T26643 514-515 . denotes .
T26642 509-514 NNS denotes sites
T26641 501-508 JJ denotes binding
T26640 495-500 NNS denotes NFAT5
T26639 491-494 CD denotes two
T26638 487-490 CC denotes and
T26637 481-486 NN denotes NF-κB
T26636 475-480 CD denotes three
T26635 466-474 VBZ denotes contains
T26634 461-465 RB denotes here
T26633 452-460 VBN denotes analyzed
T26632 444-451 VB denotes isolate
T26631 432-443 NN denotes HIV-198IN22
T26630 428-431 DT denotes The
T26629 426-427 . denotes .
T26628 412-426 NNP denotes HIV-198IN22-WT
T26627 409-411 IN denotes of
T26626 404-408 DT denotes that
T26625 394-403 IN denotes alongside
T26624 388-393 VBN denotes shown
T26623 385-387 VBZ denotes is
T26622 376-384 NN denotes sequence
T26621 372-375 NNP denotes LTR
T26620 370-371 -RRB- denotes )
T26619 364-370 NNP denotes N5-Mut
T26618 352-363 NNP denotes HIV-198IN22
T26617 351-352 -LRB- denotes (
T26616 344-350 JJ denotes mutant
T26615 339-343 NN denotes site
T26614 331-338 JJ denotes binding
T26613 325-330 NNP denotes NFAT5
T26612 321-324 DT denotes The
T26611 319-320 . denotes .
T26610 305-319 NNP denotes HIV-198IN22-WT
T26609 303-304 NNP denotes C
T26608 295-302 JJ denotes subtype
T26607 292-294 IN denotes of
T26606 288-291 NNP denotes LTR
T26605 284-287 DT denotes the
T26604 279-283 IN denotes into
T26603 268-278 VBN denotes introduced
T26602 263-267 VBD denotes were
T26601 253-262 NNS denotes mutations
T26600 248-252 NN denotes site
T26599 240-247 JJ denotes binding
T26598 234-239 CD denotes NFAT5
T26597 232-233 . denotes .
T26596 227-232 NN denotes clone
T26595 217-226 JJ denotes molecular
T26594 206-216 JJ denotes infectious
T26593 204-205 NNP denotes C
T26592 196-203 NN denotes subtype
T26591 190-195 JJ denotes HIV-1
T26590 187-189 DT denotes an
T26589 184-186 IN denotes in
T26588 179-183 NN denotes site
T26587 171-178 JJ denotes binding
T26586 165-170 NNP denotes NFAT5
T26585 161-164 DT denotes the
T26584 158-160 IN denotes of
T26583 149-157 NN denotes Mutation
T26582 147-148 -RRB- denotes )
T26581 146-147 NNP denotes A
T26580 145-146 -LRB- denotes (
T26579 143-144 . denotes .
T26578 132-143 NN denotes replication
T26577 126-131 JJ denotes viral
T26576 114-125 JJ denotes MTb-induced
T26575 106-113 VBZ denotes impairs
T26574 92-105 RB denotes significantly
T26573 90-91 NNP denotes C
T26572 82-89 NN denotes subtype
T26571 76-81 JJ denotes HIV-1
T26570 73-75 IN denotes in
T26569 68-72 NN denotes site
T26568 62-67 NNP denotes NFAT5
T26567 58-61 DT denotes the
T26566 55-57 IN denotes of
T26565 44-54 NN denotes Disruption
T26772 1189-1190 . denotes .
T26771 1177-1189 NN denotes co-infection
T26770 1173-1176 NNP denotes MTb
T26769 1170-1172 IN denotes of
R19340 T26565 T26575 nsubj Disruption,impairs
R19341 T26566 T26565 prep of,Disruption
R19342 T26567 T26569 det the,site
R19343 T26568 T26569 compound NFAT5,site
R19344 T26569 T26566 pobj site,of
R19345 T26570 T26565 prep in,Disruption
R19346 T26571 T26573 amod HIV-1,C
R19347 T26572 T26573 compound subtype,C
R19348 T26573 T26570 pobj C,in
R19349 T26574 T26575 advmod significantly,impairs
R19350 T26575 T26575 ROOT impairs,impairs
R19351 T26576 T26578 amod MTb-induced,replication
R19352 T26577 T26578 amod viral,replication
R19353 T26578 T26575 dobj replication,impairs
R19354 T26579 T26575 punct .,impairs
R19355 T26580 T26583 punct (,Mutation
R19356 T26581 T26583 det A,Mutation
R19357 T26582 T26581 punct ),A
R19358 T26583 T26583 ROOT Mutation,Mutation
R19359 T26584 T26583 prep of,Mutation
R19360 T26585 T26588 det the,site
R19361 T26586 T26588 nmod NFAT5,site
R19362 T26587 T26588 amod binding,site
R19363 T26588 T26584 pobj site,of
R19364 T26589 T26583 prep in,Mutation
R19365 T26590 T26596 det an,clone
R19366 T26591 T26596 amod HIV-1,clone
R19367 T26592 T26593 compound subtype,C
R19368 T26593 T26596 nmod C,clone
R19369 T26594 T26596 amod infectious,clone
R19370 T26595 T26596 amod molecular,clone
R19371 T26596 T26589 pobj clone,in
R19372 T26597 T26583 punct .,Mutation
R19373 T26598 T26601 nummod NFAT5,mutations
R19374 T26599 T26601 amod binding,mutations
R19375 T26600 T26601 compound site,mutations
R19376 T26601 T26603 nsubjpass mutations,introduced
R19377 T26602 T26603 auxpass were,introduced
R19378 T26603 T26603 ROOT introduced,introduced
R19379 T26604 T26603 prep into,introduced
R19380 T26605 T26606 det the,LTR
R19381 T26606 T26604 pobj LTR,into
R19382 T26607 T26606 prep of,LTR
R19383 T26608 T26610 compound subtype,HIV-198IN22-WT
R19384 T26609 T26610 compound C,HIV-198IN22-WT
R19385 T26610 T26607 pobj HIV-198IN22-WT,of
R19386 T26611 T26603 punct .,introduced
R19387 T26612 T26615 det The,site
R19388 T26613 T26615 nmod NFAT5,site
R19389 T26614 T26615 amod binding,site
R19390 T26615 T26622 nmod site,sequence
R19391 T26616 T26615 amod mutant,site
R19392 T26617 T26619 punct (,N5-Mut
R19393 T26618 T26619 compound HIV-198IN22,N5-Mut
R19394 T26619 T26616 appos N5-Mut,mutant
R19395 T26620 T26619 punct ),N5-Mut
R19396 T26621 T26622 compound LTR,sequence
R19397 T26622 T26624 nsubjpass sequence,shown
R19398 T26623 T26624 auxpass is,shown
R19399 T26624 T26624 ROOT shown,shown
R19400 T26625 T26624 prep alongside,shown
R19401 T26626 T26625 pobj that,alongside
R19402 T26627 T26626 prep of,that
R19403 T26628 T26627 pobj HIV-198IN22-WT,of
R19404 T26629 T26624 punct .,shown
R19405 T26630 T26632 det The,isolate
R19406 T26631 T26632 compound HIV-198IN22,isolate
R19407 T26632 T26632 ROOT isolate,isolate
R19408 T26633 T26633 ROOT analyzed,analyzed
R19409 T26634 T26633 advmod here,analyzed
R19410 T26635 T26633 dep contains,analyzed
R19411 T26636 T26637 nummod three,NF-κB
R19412 T26637 T26635 dobj NF-κB,contains
R19413 T26638 T26637 cc and,NF-κB
R19414 T26639 T26640 nummod two,NFAT5
R19415 T26640 T26642 nmod NFAT5,sites
R19416 T26641 T26642 amod binding,sites
R19417 T26642 T26637 conj sites,NF-κB
R19418 T26643 T26633 punct .,analyzed
R19419 T26644 T26649 det The,adenine
R19420 T26645 T26649 amod unique,adenine
R19421 T26646 T26647 nummod 3,′
R19422 T26647 T26648 compound ′,terminal
R19423 T26648 T26649 compound terminal,adenine
R19424 T26649 T26662 nsubjpass adenine,shown
R19425 T26650 T26649 punct ",",adenine
R19426 T26651 T26652 nsubj which,is
R19427 T26652 T26649 relcl is,adenine
R19428 T26653 T26652 acomp important,is
R19429 T26654 T26653 prep for,important
R19430 T26655 T26656 nsubj NFAT5,binding
R19431 T26656 T26654 amod binding,for
R19432 T26657 T26656 prep to,binding
R19433 T26658 T26659 poss its,site
R19434 T26659 T26657 pobj site,to
R19435 T26660 T26649 punct ",",adenine
R19436 T26661 T26662 auxpass is,shown
R19437 T26662 T26662 ROOT shown,shown
R19438 T26663 T26662 prep in,shown
R19439 T26664 T26663 pobj blocks,in
R19440 T26665 T26662 punct .,shown
R19441 T26666 T26668 nsubjpass Mutations,introduced
R19442 T26667 T26668 auxpass were,introduced
R19443 T26668 T26668 ROOT introduced,introduced
R19444 T26669 T26668 prep into,introduced
R19445 T26670 T26673 det the,LTR
R19446 T26671 T26672 nummod 3,′
R19447 T26672 T26673 compound ′,LTR
R19448 T26673 T26669 pobj LTR,into
R19449 T26674 T26673 prep of,LTR
R19450 T26675 T26678 det the,sequence
R19451 T26676 T26678 nmod HIV-198IN22-WT,sequence
R19452 T26677 T26678 amod proviral,sequence
R19453 T26678 T26674 pobj sequence,of
R19454 T26679 T26668 punct .,introduced
R19455 T26680 T26686 nsubjpass PBMC,infected
R19456 T26681 T26680 prep from,PBMC
R19457 T26682 T26684 nummod four,donors
R19458 T26683 T26684 amod normal,donors
R19459 T26684 T26681 pobj donors,from
R19460 T26685 T26686 auxpass were,infected
R19461 T26686 T26686 ROOT infected,infected
R19462 T26687 T26686 prep with,infected
R19463 T26688 T26689 nummod 1000,TCID50
R19464 T26689 T26687 pobj TCID50,with
R19465 T26690 T26689 prep of,TCID50
R19466 T26691 T26690 pobj HIV-198IN22,of
R19467 T26692 T26689 appos WT,TCID50
R19468 T26693 T26692 cc or,WT
R19469 T26694 T26692 conj HIV-198IN22-N5-Mut,WT
R19470 T26695 T26686 punct .,infected
R19471 T26696 T26702 nsubjpass Cells,left
R19472 T26697 T26702 auxpass were,left
R19473 T26698 T26697 advmod then,were
R19474 T26699 T26700 punct (,B
R19475 T26700 T26697 dep B,were
R19476 T26701 T26697 punct ),were
R19477 T26702 T26702 ROOT left,left
R19478 T26703 T26702 xcomp infected,left
R19479 T26704 T26703 prep with,infected
R19480 T26705 T26704 pobj virus,with
R19481 T26706 T26703 advmod alone,infected
R19482 T26707 T26703 cc or,infected
R19483 T26708 T26709 punct (,C
R19484 T26709 T26711 nmod C,co-infected
R19485 T26710 T26709 punct ),C
R19486 T26711 T26703 conj co-infected,infected
R19487 T26712 T26711 prep with,co-infected
R19488 T26713 T26714 compound MTb,strain
R19489 T26714 T26715 compound strain,CDC1551
R19490 T26715 T26712 pobj CDC1551,with
R19491 T26716 T26715 punct (,CDC1551
R19492 T26717 T26718 nummod 10,∶
R19493 T26718 T26715 appos ∶,CDC1551
R19494 T26719 T26720 nummod 1,cells
R19495 T26720 T26721 nsubj cells,∶
R19496 T26721 T26722 amod ∶,bacilli
R19497 T26722 T26718 appos bacilli,∶
R19498 T26723 T26718 punct ),∶
R19499 T26724 T26702 punct .,left
R19500 T26725 T26726 compound Culture,supernatants
R19501 T26726 T26728 nsubjpass supernatants,collected
R19502 T26727 T26728 auxpass were,collected
R19503 T26728 T26728 ROOT collected,collected
R19504 T26729 T26728 prep at,collected
R19505 T26730 T26729 pobj days,at
R19506 T26731 T26730 nummod 3,days
R19507 T26732 T26728 punct ",",collected
R19508 T26733 T26736 nummod 7,post-infection
R19509 T26734 T26733 cc and,7
R19510 T26735 T26733 conj 11,7
R19511 T26736 T26742 nsubjpass post-infection,measured
R19512 T26737 T26736 cc and,post-infection
R19513 T26738 T26740 amod viral,levels
R19514 T26739 T26740 amod p24,levels
R19515 T26740 T26736 conj levels,post-infection
R19516 T26741 T26742 auxpass were,measured
R19517 T26742 T26728 conj measured,collected
R19518 T26743 T26742 punct .,measured
R19519 T26744 T26749 nsubjpass Replication,reduced
R19520 T26745 T26744 prep of,Replication
R19521 T26746 T26745 pobj HIV-198IN22-N5-Mut,of
R19522 T26747 T26749 auxpass was,reduced
R19523 T26748 T26749 advmod significantly,reduced
R19524 T26749 T26749 ROOT reduced,reduced
R19525 T26750 T26749 prep at,reduced
R19526 T26751 T26750 pobj day,at
R19527 T26752 T26753 nummod 11,post-infection
R19528 T26753 T26754 npadvmod post-infection,in
R19529 T26754 T26749 prep in,reduced
R19530 T26755 T26754 pobj comparison,in
R19531 T26756 T26755 prep to,comparison
R19532 T26757 T26756 pobj HIV-198IN22,to
R19533 T26758 T26757 appos WT,HIV-198IN22
R19534 T26759 T26760 punct (,*
R19535 T26760 T26757 appos *,HIV-198IN22
R19536 T26761 T26762 punct ",",p
R19537 T26762 T26760 dep p,*
R19538 T26763 T26762 advmod <,p
R19539 T26764 T26762 dobj 0.05,p
R19540 T26765 T26762 punct ),p
R19541 T26766 T26762 prep in,p
R19542 T26767 T26768 det the,presence
R19543 T26768 T26766 pobj presence,in
R19544 T26769 T26768 prep of,presence
R19545 T26770 T26771 compound MTb,co-infection
R19546 T26771 T26769 pobj co-infection,of
R19547 T26772 T26749 punct .,reduced

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T26549 999-1002 Protein denotes p24
T26548 557-566 Positive_regulation denotes important
T26547 577-584 Binding denotes binding
T26546 571-576 Protein denotes NFAT5
T26545 495-514 Protein denotes NFAT5 binding sites
T26544 481-486 Protein denotes NF-κB
T26543 331-338 Binding denotes binding
T26542 331-338 Binding denotes binding
T26541 367-370 Protein denotes Mut
T26540 364-366 Protein denotes N5
T26539 325-330 Protein denotes NFAT5
T26538 234-239 Protein denotes NFAT5
T26537 165-183 Protein denotes NFAT5 binding site
T26536 44-54 Negative_regulation denotes Disruption
T26535 62-72 Protein denotes NFAT5 site
R19328 T26535 T26536 themeOf NFAT5 site,Disruption
R19329 T26539 T26542 themeOf NFAT5,binding
R19330 T26539 T26543 themeOf NFAT5,binding
R19331 T26540 T26543 themeOf N5,binding
R19332 T26546 T26547 themeOf NFAT5,binding
R19333 T26547 T26548 themeOf binding,important

testone

Id Subject Object Predicate Lexical cue
T26290 1077-1084 Negative_regulation denotes reduced
T26289 577-584 Binding denotes binding
T26288 999-1002 Protein denotes p24
T26287 571-576 Protein denotes NFAT5
R19129 T26287 T26289 themeOf NFAT5,binding

test3

Id Subject Object Predicate Lexical cue
T26296 1077-1084 Negative_regulation denotes reduced
T26295 999-1002 Protein denotes p24
T26294 577-584 Binding denotes binding
T26293 571-576 Protein denotes NFAT5
T26292 999-1002 Protein denotes p24
T26291 571-576 Protein denotes NFAT5
R19130 T26293 T26294 themeOf NFAT5,binding