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PMC:3320587 / 3733-3855 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1350 117-122 NN denotes TRAF6
T1349 110-116 NN denotes ligase
T1348 100-109 NN denotes ubiquitin
T1347 96-99 DT denotes the
T1346 92-95 CC denotes and
T1345 90-91 -COMMA- denotes ,
T1344 85-90 NN denotes IRAK4
T1343 81-84 CC denotes and
T1342 75-80 NN denotes IRAK1
T1341 65-74 VB denotes including
T1340 63-64 -COMMA- denotes ,
T1339 56-63 NN denotes kinases
T1338 48-55 JJ denotes several
T1337 45-47 IN denotes of
T1336 33-44 NN denotes recruitment
T1335 22-32 JJ denotes subsequent
T1334 18-21 DT denotes the
T1333 14-17 CC denotes and
T1332 8-13 NN denotes MyD88
T1331 0-7 NN denotes protein
R896 T1332 T1331 arg1Of MyD88,protein
R897 T1332 T1333 arg1Of MyD88,and
R899 T1336 T1333 arg2Of recruitment,and
R900 T1336 T1334 arg1Of recruitment,the
R901 T1336 T1335 arg1Of recruitment,subsequent
R902 T1336 T1337 arg1Of recruitment,of
R903 T1339 T1337 arg2Of kinases,of
R904 T1339 T1338 arg1Of kinases,several
R905 T1339 T1340 arg1Of kinases,","
R906 T1339 T1341 arg1Of kinases,including
R907 T1342 T1343 arg1Of IRAK1,and
R908 T1343 T1346 arg1Of and,and
R909 T1344 T1343 arg2Of IRAK4,and
R910 T1346 T1341 arg2Of and,including
R911 T1346 T1345 arg1Of and,","
R912 T1350 T1346 arg2Of TRAF6,and
R913 T1350 T1347 arg1Of TRAF6,the
R914 T1350 T1348 arg1Of TRAF6,ubiquitin
R915 T1350 T1349 arg1Of TRAF6,ligase

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T986 117-122 Protein denotes TRAF6
T985 85-90 Protein denotes IRAK4
T984 75-80 Protein denotes IRAK1
T983 8-13 Protein denotes MyD88

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1778 117-122 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T1775 8-13 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

GO-MF

Id Subject Object Predicate Lexical cue
T1038 100-109 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

simple1

Id Subject Object Predicate Lexical cue
T1080 117-122 Protein denotes TRAF6
T1079 85-90 Protein denotes IRAK4
T1078 75-80 Protein denotes IRAK1
T1077 8-13 Protein denotes MyD88

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2686 33-44 Binding denotes recruitment
T2674 117-122 Protein denotes TRAF6
T2673 85-90 Protein denotes IRAK4
T2672 75-80 Protein denotes IRAK1
T2671 8-13 Protein denotes MyD88
R2043 T2671 T2686 themeOf MyD88,recruitment
R2047 T2671 T2686 themeOf MyD88,recruitment
R2050 T2671 T2686 themeOf MyD88,recruitment
R2057 T2672 T2686 themeOf IRAK1,recruitment
R2064 T2673 T2686 themeOf IRAK4,recruitment
R2075 T2674 T2686 themeOf TRAF6,recruitment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1865 33-44 Binding denotes recruitment
T1853 117-122 Protein denotes TRAF6
T1852 85-90 Protein denotes IRAK4
T1851 75-80 Protein denotes IRAK1
T1850 8-13 Protein denotes MyD88
R1376 T1850 T1865 themeOf MyD88,recruitment
R1377 T1850 T1865 themeOf MyD88,recruitment
R1378 T1850 T1865 themeOf MyD88,recruitment
R1380 T1851 T1865 themeOf IRAK1,recruitment
R1381 T1852 T1865 themeOf IRAK4,recruitment
R1382 T1853 T1865 themeOf TRAF6,recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T1816 33-44 Binding denotes recruitment
T1802 117-122 Protein denotes TRAF6
T1801 85-90 Protein denotes IRAK4
T1800 75-80 Protein denotes IRAK1
T1799 8-13 Protein denotes MyD88
R1354 T1799 T1816 themeOf MyD88,recruitment
R1355 T1799 T1816 themeOf MyD88,recruitment
R1356 T1799 T1816 themeOf MyD88,recruitment
R1357 T1800 T1816 themeOf IRAK1,recruitment
R1358 T1801 T1816 themeOf IRAK4,recruitment
R1359 T1802 T1816 themeOf TRAF6,recruitment

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2784 18-122 Binding denotes the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6
T2764 96-122 Protein denotes the ubiquitin ligase TRAF6
T2751 0-122 Protein denotes protein MyD88 and the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6
T2738 100-109 Protein denotes ubiquitin
T2730 48-91 Protein denotes several kinases, including IRAK1 and IRAK4,
T2728 85-90 Protein denotes IRAK4
T2710 75-80 Protein denotes IRAK1
T2708 96-122 Protein denotes the ubiquitin ligase TRAF6
T2699 8-13 Protein denotes MyD88
R2148 T2730 T2784 themeOf "several kinases, including IRAK1 and IRAK4,","the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6"
R2155 T2764 T2784 themeOf the ubiquitin ligase TRAF6,"the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2187 117-122 NNP denotes TRAF6
T2186 110-116 NN denotes ligase
T2185 100-109 NN denotes ubiquitin
T2184 96-99 DT denotes the
T2183 92-95 CC denotes and
T2182 90-91 , denotes ,
T2181 85-90 NNP denotes IRAK4
T2180 81-84 CC denotes and
T2179 75-80 NNP denotes IRAK1
T2178 65-74 VBG denotes including
T2177 63-64 , denotes ,
T2176 56-63 NNS denotes kinases
T2175 48-55 JJ denotes several
T2174 45-47 IN denotes of
T2173 33-44 NN denotes recruitment
T2172 22-32 JJ denotes subsequent
T2171 18-21 DT denotes the
T2170 14-17 CC denotes and
T2169 8-13 NNP denotes MyD88
T2168 0-7 NN denotes protein
R1668 T2169 T2168 appos MyD88,protein
R1671 T2171 T2173 det the,recruitment
R1672 T2172 T2173 amod subsequent,recruitment
R1674 T2174 T2173 prep of,recruitment
R1676 T2175 T2176 amod several,kinases
R1677 T2176 T2174 pobj kinases,of
R1679 T2177 T2176 punct ",",kinases
R1680 T2178 T2176 prep including,kinases
R1682 T2179 T2178 pobj IRAK1,including
R1683 T2180 T2179 cc and,IRAK1
R1684 T2181 T2179 conj IRAK4,IRAK1
R1686 T2182 T2181 punct ",",IRAK4
R1687 T2183 T2181 cc and,IRAK4
R1691 T2186 T2187 compound ligase,TRAF6
R1692 T2187 T2185 appos TRAF6,ubiquitin

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1889 33-44 Binding denotes recruitment
T1886 100-116 Protein denotes ubiquitin ligase
T1885 85-90 Protein denotes IRAK4
T1884 75-80 Protein denotes IRAK1
T1883 8-13 Protein denotes MyD88
R1395 T1886 T1889 themeOf ubiquitin ligase,recruitment

testone

Id Subject Object Predicate Lexical cue
T875 33-44 Binding denotes recruitment
T861 117-122 Protein denotes TRAF6
T860 85-90 Protein denotes IRAK4
T859 75-80 Protein denotes IRAK1
T858 8-13 Protein denotes MyD88
R610 T859 T875 themeOf IRAK1,recruitment
R611 T860 T875 themeOf IRAK4,recruitment
R612 T861 T875 themeOf TRAF6,recruitment

test3

Id Subject Object Predicate Lexical cue
T909 117-122 Protein denotes TRAF6
T908 85-90 Protein denotes IRAK4
T907 75-80 Protein denotes IRAK1
T906 33-44 Binding denotes recruitment
T905 8-13 Protein denotes MyD88
T887 117-122 Protein denotes TRAF6
T886 85-90 Protein denotes IRAK4
T885 75-80 Protein denotes IRAK1
T884 8-13 Protein denotes MyD88
R620 T907 T906 themeOf IRAK1,recruitment
R621 T908 T906 themeOf IRAK4,recruitment
R622 T909 T906 themeOf TRAF6,recruitment
R618 T905 T906 themeOf MyD88,recruitment