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PMC:3320587 / 3677-3892 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-10588727-98010775 181-183 10588727 denotes 21
22496647-9430229-98010776 186-188 9430229 denotes 23
22496647-21852682-98010777 204-206 21852682 denotes 10
22496647-14751757-98010778 210-212 14751757 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1369 213-214 -RRB- denotes )
T1368 212-213 -RRB- denotes ]
T1367 210-212 CD denotes 24
T1366 209-210 -LRB- denotes [
T1365 207-208 -COMMA- denotes ,
T1364 206-207 -RRB- denotes ]
T1363 204-206 CD denotes 10
T1362 203-204 -LRB- denotes [
T1361 200-202 IN denotes in
T1360 191-199 VB denotes reviewed
T1359 189-190 -COMMA- denotes ,
T1358 188-189 -RRB- denotes ]
T1357 186-188 CD denotes 23
T1356 185-186 -LRB- denotes [
T1355 184-185 NN denotes –
T1354 183-184 -RRB- denotes ]
T1353 181-183 CD denotes 21
T1352 180-181 -LRB- denotes [
T1351 179-180 -LRB- denotes (
T1350 173-178 NN denotes TRAF6
T1349 166-172 NN denotes ligase
T1348 156-165 NN denotes ubiquitin
T1347 152-155 DT denotes the
T1346 148-151 CC denotes and
T1345 146-147 -COMMA- denotes ,
T1344 141-146 NN denotes IRAK4
T1343 137-140 CC denotes and
T1342 131-136 NN denotes IRAK1
T1341 121-130 VB denotes including
T1340 119-120 -COMMA- denotes ,
T1339 112-119 NN denotes kinases
T1338 104-111 JJ denotes several
T1337 101-103 IN denotes of
T1336 89-100 NN denotes recruitment
T1335 78-88 JJ denotes subsequent
T1334 74-77 DT denotes the
T1333 70-73 CC denotes and
T1332 64-69 NN denotes MyD88
T1331 56-63 NN denotes protein
T1330 48-55 NN denotes adaptor
T1329 44-47 DT denotes the
T1328 41-43 IN denotes of
T1327 30-40 NN denotes engagement
T1326 27-29 IN denotes in
T1325 19-26 VB denotes results
T1324 14-18 NN denotes TLR2
T1323 11-13 IN denotes of
T1322 0-10 NN denotes Engagement
R888 T1322 T1323 arg1Of Engagement,of
R889 T1322 T1325 arg1Of Engagement,results
R890 T1324 T1323 arg2Of TLR2,of
R891 T1325 T1326 arg1Of results,in
R892 T1327 T1326 arg2Of engagement,in
R893 T1327 T1328 arg1Of engagement,of
R894 T1332 T1329 arg1Of MyD88,the
R895 T1332 T1330 arg1Of MyD88,adaptor
R896 T1332 T1331 arg1Of MyD88,protein
R897 T1332 T1333 arg1Of MyD88,and
R898 T1333 T1328 arg2Of and,of
R899 T1336 T1333 arg2Of recruitment,and
R900 T1336 T1334 arg1Of recruitment,the
R901 T1336 T1335 arg1Of recruitment,subsequent
R902 T1336 T1337 arg1Of recruitment,of
R903 T1339 T1337 arg2Of kinases,of
R904 T1339 T1338 arg1Of kinases,several
R905 T1339 T1340 arg1Of kinases,","
R906 T1339 T1341 arg1Of kinases,including
R907 T1342 T1343 arg1Of IRAK1,and
R908 T1343 T1346 arg1Of and,and
R909 T1344 T1343 arg2Of IRAK4,and
R910 T1346 T1341 arg2Of and,including
R911 T1346 T1345 arg1Of and,","
R912 T1350 T1346 arg2Of TRAF6,and
R913 T1350 T1347 arg1Of TRAF6,the
R914 T1350 T1348 arg1Of TRAF6,ubiquitin
R915 T1350 T1349 arg1Of TRAF6,ligase
R916 T1350 T1351 arg1Of TRAF6,(
R917 T1353 T1352 arg2Of 21,[
R918 T1354 T1352 arg3Of ],[
R919 T1355 T1351 arg2Of –,(
R920 T1355 T1352 arg1Of –,[
R921 T1355 T1356 arg1Of –,[
R922 T1355 T1359 arg1Of –,","
R923 T1355 T1360 arg2Of –,reviewed
R924 T1355 T1365 arg1Of –,","
R925 T1355 T1366 arg1Of –,[
R926 T1357 T1356 arg2Of 23,[
R927 T1358 T1356 arg3Of ],[
R928 T1360 T1361 arg1Of reviewed,in
R929 T1363 T1361 arg2Of 10,in
R930 T1363 T1362 arg2Of 10,[
R931 T1364 T1362 arg3Of ],[
R932 T1367 T1366 arg2Of 24,[
R933 T1368 T1366 arg3Of ],[
R934 T1369 T1351 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T986 173-178 Protein denotes TRAF6
T985 141-146 Protein denotes IRAK4
T984 131-136 Protein denotes IRAK1
T983 64-69 Protein denotes MyD88
T982 14-18 Protein denotes TLR2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1778 173-178 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T1775 64-69 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T1774 14-18 http://www.uniprot.org/uniprot/O60603 denotes TLR2

GO-MF

Id Subject Object Predicate Lexical cue
T1038 156-165 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T931 0-215 Sentence denotes Engagement of TLR2 results in engagement of the adaptor protein MyD88 and the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6 ([21]–[23], reviewed in [10], [24]).
T23 0-215 Sentence denotes Engagement of TLR2 results in engagement of the adaptor protein MyD88 and the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6 ([21]–[23], reviewed in [10], [24]).

simple1

Id Subject Object Predicate Lexical cue
T1080 173-178 Protein denotes TRAF6
T1079 141-146 Protein denotes IRAK4
T1078 131-136 Protein denotes IRAK1
T1077 64-69 Protein denotes MyD88
T1076 14-18 Protein denotes TLR2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2688 30-40 Binding denotes engagement
T2687 0-10 Binding denotes Engagement
T2686 89-100 Binding denotes recruitment
T2674 173-178 Protein denotes TRAF6
T2673 141-146 Protein denotes IRAK4
T2672 131-136 Protein denotes IRAK1
T2671 64-69 Protein denotes MyD88
T2670 14-18 Protein denotes TLR2
R2052 T2671 T2688 themeOf MyD88,engagement
R2062 T2672 T2688 themeOf IRAK1,engagement
R2034 T2670 T2687 themeOf TLR2,Engagement
R2043 T2671 T2686 themeOf MyD88,recruitment
R2047 T2671 T2686 themeOf MyD88,recruitment
R2050 T2671 T2686 themeOf MyD88,recruitment
R2057 T2672 T2686 themeOf IRAK1,recruitment
R2064 T2673 T2686 themeOf IRAK4,recruitment
R2069 T2673 T2688 themeOf IRAK4,engagement
R2075 T2674 T2686 themeOf TRAF6,recruitment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1867 30-40 Binding denotes engagement
T1866 0-10 Binding denotes Engagement
T1865 89-100 Binding denotes recruitment
T1853 173-178 Protein denotes TRAF6
T1852 141-146 Protein denotes IRAK4
T1851 131-136 Protein denotes IRAK1
T1850 64-69 Protein denotes MyD88
T1849 14-18 Protein denotes TLR2
R1375 T1849 T1866 themeOf TLR2,Engagement
R1376 T1850 T1865 themeOf MyD88,recruitment
R1377 T1850 T1865 themeOf MyD88,recruitment
R1378 T1850 T1865 themeOf MyD88,recruitment
R1379 T1850 T1867 themeOf MyD88,engagement
R1380 T1851 T1865 themeOf IRAK1,recruitment
R1381 T1852 T1865 themeOf IRAK4,recruitment
R1382 T1853 T1865 themeOf TRAF6,recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T1816 89-100 Binding denotes recruitment
T1815 30-40 Binding denotes engagement
T1814 0-10 Binding denotes Engagement
T1802 173-178 Protein denotes TRAF6
T1801 141-146 Protein denotes IRAK4
T1800 131-136 Protein denotes IRAK1
T1799 64-69 Protein denotes MyD88
T1798 14-18 Protein denotes TLR2
R1352 T1798 T1814 themeOf TLR2,Engagement
R1353 T1799 T1815 themeOf MyD88,engagement
R1354 T1799 T1816 themeOf MyD88,recruitment
R1355 T1799 T1816 themeOf MyD88,recruitment
R1356 T1799 T1816 themeOf MyD88,recruitment
R1357 T1800 T1816 themeOf IRAK1,recruitment
R1358 T1801 T1816 themeOf IRAK4,recruitment
R1359 T1802 T1816 themeOf TRAF6,recruitment

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2784 74-178 Binding denotes the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6
T2764 152-178 Protein denotes the ubiquitin ligase TRAF6
T2751 56-178 Protein denotes protein MyD88 and the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6
T2738 156-165 Protein denotes ubiquitin
T2737 14-18 Protein denotes TLR2
T2730 104-147 Protein denotes several kinases, including IRAK1 and IRAK4,
T2728 141-146 Protein denotes IRAK4
T2710 131-136 Protein denotes IRAK1
T2708 152-178 Protein denotes the ubiquitin ligase TRAF6
T2699 64-69 Protein denotes MyD88
R2148 T2730 T2784 themeOf "several kinases, including IRAK1 and IRAK4,","the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6"
R2155 T2764 T2784 themeOf the ubiquitin ligase TRAF6,"the subsequent recruitment of several kinases, including IRAK1 and IRAK4, and the ubiquitin ligase TRAF6"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2206 214-215 . denotes .
T2205 213-214 -RRB- denotes )
T2204 212-213 NNP denotes ]
T2203 210-212 CD denotes 24
T2202 209-210 NNP denotes [
T2201 207-208 , denotes ,
T2200 206-207 NNP denotes ]
T2199 204-206 CD denotes 10
T2198 203-204 NNP denotes [
T2197 200-202 IN denotes in
T2196 191-199 VBN denotes reviewed
T2195 189-190 , denotes ,
T2194 188-189 NNP denotes ]
T2193 186-188 CD denotes 23
T2192 185-186 NNP denotes [
T2191 183-184 NNP denotes ]
T2190 181-183 CD denotes 21
T2189 180-181 NNP denotes [
T2188 179-180 -LRB- denotes (
T2187 173-178 NNP denotes TRAF6
T2186 166-172 NN denotes ligase
T2185 156-165 NN denotes ubiquitin
T2184 152-155 DT denotes the
T2183 148-151 CC denotes and
T2182 146-147 , denotes ,
T2181 141-146 NNP denotes IRAK4
T2180 137-140 CC denotes and
T2179 131-136 NNP denotes IRAK1
T2178 121-130 VBG denotes including
T2177 119-120 , denotes ,
T2176 112-119 NNS denotes kinases
T2175 104-111 JJ denotes several
T2174 101-103 IN denotes of
T2173 89-100 NN denotes recruitment
T2172 78-88 JJ denotes subsequent
T2171 74-77 DT denotes the
T2170 70-73 CC denotes and
T2169 64-69 NNP denotes MyD88
T2168 56-63 NN denotes protein
T2167 48-55 NN denotes adaptor
T2166 44-47 DT denotes the
T2165 41-43 IN denotes of
T2164 30-40 NN denotes engagement
T2163 27-29 IN denotes in
T2162 19-26 NNS denotes results
T2161 14-18 CD denotes TLR2
T2160 11-13 IN denotes of
T2159 0-10 NNP denotes Engagement
R1613 T2189 T2187 appos [,TRAF6
R1621 T2190 T2191 nummod 21,]
R1626 T2191 T2187 appos ],TRAF6
R1629 T2192 T2187 appos [,TRAF6
R1633 T2193 T2194 nummod 23,]
R1637 T2194 T2187 appos ],TRAF6
R1641 T2195 T2196 punct ",",reviewed
R1644 T2196 T2196 ROOT reviewed,reviewed
R1649 T2197 T2196 prep in,reviewed
R1653 T2198 T2197 pobj [,in
R1654 T2159 T2196 nsubj Engagement,reviewed
R1655 T2160 T2159 prep of,Engagement
R1656 T2161 T2162 nummod TLR2,results
R1657 T2199 T2200 nummod 10,]
R1658 T2162 T2160 pobj results,of
R1659 T2163 T2162 prep in,results
R1660 T2164 T2163 pobj engagement,in
R1661 T2200 T2196 npadvmod ],reviewed
R1662 T2165 T2164 prep of,engagement
R1663 T2201 T2200 punct ",",]
R1664 T2166 T2168 det the,protein
R1665 T2202 T2200 conj [,]
R1666 T2167 T2168 compound adaptor,protein
R1667 T2168 T2165 pobj protein,of
R1668 T2169 T2168 appos MyD88,protein
R1669 T2170 T2164 cc and,engagement
R1670 T2203 T2204 nummod 24,]
R1671 T2171 T2173 det the,recruitment
R1672 T2172 T2173 amod subsequent,recruitment
R1673 T2173 T2164 conj recruitment,engagement
R1674 T2174 T2173 prep of,recruitment
R1675 T2204 T2204 ROOT ],]
R1676 T2175 T2176 amod several,kinases
R1677 T2176 T2174 pobj kinases,of
R1678 T2205 T2202 punct ),[
R1679 T2177 T2176 punct ",",kinases
R1680 T2178 T2176 prep including,kinases
R1681 T2206 T2196 punct .,reviewed
R1682 T2179 T2178 pobj IRAK1,including
R1683 T2180 T2179 cc and,IRAK1
R1684 T2181 T2179 conj IRAK4,IRAK1
R1686 T2182 T2181 punct ",",IRAK4
R1687 T2183 T2181 cc and,IRAK4
R1688 T2184 T2196 det the,reviewed
R1690 T2185 T2196 npadvmod ubiquitin,reviewed
R1691 T2186 T2187 compound ligase,TRAF6
R1692 T2187 T2185 appos TRAF6,ubiquitin
R1693 T2188 T2189 punct (,[

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1889 89-100 Binding denotes recruitment
T1888 30-40 Binding denotes engagement
T1887 30-40 Binding denotes engagement
T1886 156-172 Protein denotes ubiquitin ligase
T1885 141-146 Protein denotes IRAK4
T1884 131-136 Protein denotes IRAK1
T1883 64-69 Protein denotes MyD88
R1393 T1883 T1887 themeOf MyD88,engagement
R1394 T1886 T1888 themeOf ubiquitin ligase,engagement
R1395 T1886 T1889 themeOf ubiquitin ligase,recruitment

testone

Id Subject Object Predicate Lexical cue
T875 89-100 Binding denotes recruitment
T874 30-40 Binding denotes engagement
T873 0-10 Binding denotes Engagement
T861 173-178 Protein denotes TRAF6
T860 141-146 Protein denotes IRAK4
T859 131-136 Protein denotes IRAK1
T858 64-69 Protein denotes MyD88
T857 14-18 Protein denotes TLR2
R607 T857 T873 themeOf TLR2,Engagement
R608 T857 T874 themeOf TLR2,engagement
R609 T858 T874 themeOf MyD88,engagement
R610 T859 T875 themeOf IRAK1,recruitment
R611 T860 T875 themeOf IRAK4,recruitment
R612 T861 T875 themeOf TRAF6,recruitment

test3

Id Subject Object Predicate Lexical cue
T909 173-178 Protein denotes TRAF6
T908 141-146 Protein denotes IRAK4
T907 131-136 Protein denotes IRAK1
T906 89-100 Binding denotes recruitment
T905 64-69 Protein denotes MyD88
T904 30-40 Binding denotes engagement
T903 14-18 Protein denotes TLR2
T902 0-10 Binding denotes Engagement
T887 173-178 Protein denotes TRAF6
T886 141-146 Protein denotes IRAK4
T885 131-136 Protein denotes IRAK1
T884 64-69 Protein denotes MyD88
T883 14-18 Protein denotes TLR2
R617 T903 T902 themeOf TLR2,Engagement
R619 T905 T904 themeOf MyD88,engagement
R620 T907 T906 themeOf IRAK1,recruitment
R621 T908 T906 themeOf IRAK4,recruitment
R622 T909 T906 themeOf TRAF6,recruitment
R618 T905 T906 themeOf MyD88,recruitment