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PMC:3320587 / 35634-35949 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25955 313-314 -RRB- denotes )
T25954 302-313 NN denotes MDM∶bacilli
T25953 298-301 CD denotes 1∶1
T25952 297-298 -LRB- denotes (
T25951 289-296 NN denotes CDC1551
T25950 285-288 NN denotes MTb
T25949 280-284 IN denotes with
T25948 268-279 JJ denotes co-infected
T25929 180-181 -COMMA- denotes ,
T25928 172-180 NN denotes I+II-Mut
T25927 152-171 NN denotes HIV-1Lai/Bal-env-κB
T25926 150-151 -COMMA- denotes ,
T25925 144-150 NN denotes II-Mut
T25924 124-143 NN denotes HIV-1Lai/Bal-env-κB
T25923 122-123 -COMMA- denotes ,
T25922 117-122 NN denotes I-Mut
T25921 97-116 NN denotes HIV-1Lai/Bal-env-κB
T25920 89-96 NN denotes mutants
T25919 85-88 DT denotes the
T25918 82-84 CC denotes or
T25917 62-81 NN denotes HIV-1Lai/Bal-env–WT
T25916 59-61 IN denotes of
T25915 52-58 NN denotes TCID50
T25914 47-51 CD denotes 1000
T25913 42-46 IN denotes with
T25912 33-41 VB denotes infected
T25911 28-32 VB denotes were
T25910 21-27 NN denotes donors
T25909 14-20 JJ denotes normal
T25908 9-13 CD denotes four
T25907 4-8 IN denotes from
T25906 0-3 NN denotes MDM
T25947 266-267 -RRB- denotes )
T25946 265-266 NN denotes B
T25945 264-265 -LRB- denotes (
T25944 261-263 CC denotes or
T25943 255-260 RB denotes alone
T25942 249-254 NN denotes virus
T25941 244-248 IN denotes with
T25940 235-243 VB denotes infected
T25939 230-234 VB denotes left
T25938 228-229 -RRB- denotes )
T25937 227-228 NN denotes A
T25936 226-227 -LRB- denotes (
T25935 219-225 CC denotes either
T25934 214-218 VB denotes were
T25933 210-213 CC denotes and
T25932 208-209 -COMMA- denotes ,
T25931 185-208 NN denotes HIV-1Lai/Bal-env-N5-Mut
T25930 182-184 CC denotes or
R18858 T25906 T25907 arg1Of MDM,from
R18859 T25906 T25911 arg1Of MDM,were
R18860 T25906 T25912 arg2Of MDM,infected
R18861 T25906 T25934 arg1Of MDM,were
R18862 T25910 T25907 arg2Of donors,from
R18863 T25910 T25908 arg1Of donors,four
R18864 T25910 T25909 arg1Of donors,normal
R18865 T25912 T25911 arg2Of infected,were
R18866 T25912 T25913 arg1Of infected,with
R18867 T25912 T25933 arg1Of infected,and
R18868 T25915 T25914 arg1Of TCID50,1000
R18869 T25915 T25916 arg1Of TCID50,of
R18870 T25915 T25918 arg1Of TCID50,or
R18871 T25917 T25916 arg2Of HIV-1Lai/Bal-env–WT,of
R18872 T25918 T25913 arg2Of or,with
R18873 T25920 T25919 arg1Of mutants,the
R18874 T25922 T25921 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R18875 T25922 T25923 arg1Of I-Mut,","
R18876 T25923 T25926 arg1Of ",",","
R18877 T25925 T25923 arg2Of II-Mut,","
R18878 T25925 T25924 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R18879 T25926 T25930 arg1Of ",",or
R18880 T25928 T25926 arg2Of I+II-Mut,","
R18881 T25928 T25927 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R18882 T25930 T25918 arg2Of or,or
R18883 T25930 T25920 arg1Of or,mutants
R18884 T25930 T25929 arg1Of or,","
R18885 T25931 T25930 arg2Of HIV-1Lai/Bal-env-N5-Mut,or
R18886 T25933 T25932 arg1Of and,","
R18887 T25934 T25933 arg2Of were,and
R18888 T25937 T25934 arg2Of A,were
R18889 T25937 T25935 arg1Of A,either
R18890 T25937 T25936 arg2Of A,(
R18891 T25937 T25939 arg2Of A,left
R18892 T25937 T25940 arg2Of A,infected
R18893 T25937 T25948 arg1Of A,co-infected
R18894 T25938 T25936 arg3Of ),(
R18895 T25940 T25941 arg1Of infected,with
R18896 T25942 T25943 arg1Of virus,alone
R18897 T25942 T25944 arg1Of virus,or
R18898 T25944 T25941 arg2Of or,with
R18899 T25946 T25944 arg2Of B,or
R18900 T25946 T25945 arg2Of B,(
R18901 T25947 T25945 arg3Of ),(
R18902 T25948 T25949 arg1Of co-infected,with
R18903 T25951 T25949 arg2Of CDC1551,with
R18904 T25951 T25950 arg1Of CDC1551,MTb
R18905 T25951 T25952 arg1Of CDC1551,(
R18906 T25954 T25952 arg2Of MDM∶bacilli,(
R18907 T25954 T25953 arg1Of MDM∶bacilli,1∶1
R18908 T25955 T25952 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25871 198-201 Protein denotes env
T25870 165-168 Protein denotes env
T25869 137-140 Protein denotes env
T25868 110-113 Protein denotes env
T25867 75-78 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26024 198-201 http://www.uniprot.org/uniprot/P04578 denotes env
T26023 165-168 http://www.uniprot.org/uniprot/P04578 denotes env
T26022 137-140 http://www.uniprot.org/uniprot/P04578 denotes env
T26021 110-113 http://www.uniprot.org/uniprot/P04578 denotes env
T26020 75-78 http://www.uniprot.org/uniprot/P04578 denotes env

sentences

Id Subject Object Predicate Lexical cue
T25856 0-315 Sentence denotes MDM from four normal donors were infected with 1000 TCID50 of HIV-1Lai/Bal-env–WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut, and were either (A) left infected with virus alone or (B) co-infected with MTb CDC1551 (1∶1 MDM∶bacilli).
T207 0-315 Sentence denotes MDM from four normal donors were infected with 1000 TCID50 of HIV-1Lai/Bal-env–WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut, and were either (A) left infected with virus alone or (B) co-infected with MTb CDC1551 (1∶1 MDM∶bacilli).

simple1

Id Subject Object Predicate Lexical cue
T25887 198-201 Protein denotes env
T25886 165-168 Protein denotes env
T25885 137-140 Protein denotes env
T25884 110-113 Protein denotes env
T25883 75-78 Protein denotes env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T26259 198-201 Protein denotes env
T26258 165-168 Protein denotes env
T26257 137-140 Protein denotes env
T26256 110-113 Protein denotes env
T26255 75-78 Protein denotes env

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26054 198-201 Protein denotes env
T26053 165-168 Protein denotes env
T26052 137-140 Protein denotes env
T26051 110-113 Protein denotes env
T26050 75-78 Protein denotes env

DLUT931

Id Subject Object Predicate Lexical cue
T26046 198-201 Protein denotes env
T26045 165-168 Protein denotes env
T26044 137-140 Protein denotes env
T26043 110-113 Protein denotes env
T26042 75-78 Protein denotes env

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T26275 119-122 Protein denotes Mut
T26273 285-288 Protein denotes MTb
T26269 124-150 Protein denotes HIV-1Lai/Bal-env-κB II-Mut
T26263 0-3 Protein denotes MDM

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26139 117-122 NNP denotes I-Mut
T26138 106-116 NNP denotes Bal-env-κB
T26137 105-106 NN denotes /
T26136 97-105 JJ denotes HIV-1Lai
T26135 89-96 NNS denotes mutants
T26134 85-88 DT denotes the
T26133 82-84 CC denotes or
T26132 79-81 NNP denotes WT
T26131 71-78 NN denotes Bal-env
T26130 70-71 NN denotes /
T26129 62-70 JJ denotes HIV-1Lai
T26128 59-61 IN denotes of
T26127 52-58 CD denotes TCID50
T26126 47-51 CD denotes 1000
T26125 42-46 IN denotes with
T26124 33-41 VBN denotes infected
T26123 28-32 VBD denotes were
T26122 21-27 NNS denotes donors
T26121 14-20 JJ denotes normal
T26120 9-13 CD denotes four
T26119 4-8 IN denotes from
T26118 0-3 NNP denotes MDM
T26185 314-315 . denotes .
T26184 313-314 -RRB- denotes )
T26183 306-313 NNS denotes bacilli
T26182 305-306 NN denotes ∶
T26181 302-305 NNP denotes MDM
T26180 300-301 CD denotes 1
T26179 299-300 CD denotes ∶
T26178 298-299 CD denotes 1
T26177 297-298 -LRB- denotes (
T26176 289-296 NNP denotes CDC1551
T26175 285-288 NNP denotes MTb
T26174 280-284 IN denotes with
T26173 268-279 VBN denotes co-infected
T26172 266-267 -RRB- denotes )
T26171 265-266 NNP denotes B
T26170 264-265 -LRB- denotes (
T26169 261-263 CC denotes or
T26168 255-260 RB denotes alone
T26167 249-254 NN denotes virus
T26166 244-248 IN denotes with
T26163 228-229 -RRB- denotes )
T26162 227-228 NNP denotes A
T26161 226-227 -LRB- denotes (
T26160 219-225 RB denotes either
T26159 214-218 VBD denotes were
T26158 210-213 CC denotes and
T26157 208-209 , denotes ,
T26156 194-208 NN denotes Bal-env-N5-Mut
T26155 193-194 NN denotes /
T26154 185-193 JJ denotes HIV-1Lai
T26153 182-184 CC denotes or
T26152 180-181 , denotes ,
T26151 177-180 NNP denotes Mut
T26150 176-177 : denotes -
T26149 172-176 NNP denotes I+II
T26148 161-171 NNP denotes Bal-env-κB
T26147 160-161 NNP denotes /
T26146 152-160 NNP denotes HIV-1Lai
T26145 150-151 , denotes ,
T26144 144-150 NNP denotes II-Mut
T26143 133-143 NNP denotes Bal-env-κB
T26142 132-133 NNP denotes /
T26141 124-132 NNP denotes HIV-1Lai
T26140 122-123 , denotes ,
T26165 235-243 VBN denotes infected
T26164 230-234 VBD denotes left
R18996 T26122 T26119 pobj donors,from
R18997 T26123 T26124 auxpass were,infected
R18998 T26124 T26124 ROOT infected,infected
R18999 T26125 T26124 prep with,infected
R19000 T26126 T26127 nummod 1000,TCID50
R19001 T26127 T26125 pobj TCID50,with
R19002 T26128 T26127 prep of,TCID50
R19003 T26129 T26131 amod HIV-1Lai,Bal-env
R19004 T26130 T26131 compound /,Bal-env
R19005 T26131 T26128 pobj Bal-env,of
R19006 T26132 T26131 conj WT,Bal-env
R19007 T26133 T26132 cc or,WT
R19008 T26134 T26135 det the,mutants
R19009 T26135 T26132 conj mutants,WT
R19010 T26136 T26137 compound HIV-1Lai,/
R19011 T26137 T26139 compound /,I-Mut
R19012 T26138 T26139 compound Bal-env-κB,I-Mut
R19013 T26139 T26132 conj I-Mut,WT
R19014 T26140 T26139 punct ",",I-Mut
R19015 T26141 T26144 compound HIV-1Lai,II-Mut
R19016 T26142 T26144 compound /,II-Mut
R19017 T26143 T26144 compound Bal-env-κB,II-Mut
R19018 T26144 T26139 conj II-Mut,I-Mut
R19019 T26145 T26144 punct ",",II-Mut
R19020 T26146 T26149 compound HIV-1Lai,I+II
R19021 T26147 T26149 compound /,I+II
R19022 T26148 T26149 compound Bal-env-κB,I+II
R19023 T26149 T26151 compound I+II,Mut
R19024 T26150 T26151 punct -,Mut
R19025 T26151 T26144 conj Mut,II-Mut
R19026 T26152 T26151 punct ",",Mut
R19027 T26153 T26151 cc or,Mut
R19028 T26154 T26156 amod HIV-1Lai,Bal-env-N5-Mut
R19029 T26155 T26156 compound /,Bal-env-N5-Mut
R19030 T26156 T26151 conj Bal-env-N5-Mut,Mut
R19031 T26157 T26151 punct ",",Mut
R19032 T26158 T26124 cc and,infected
R19033 T26159 T26164 auxpass were,left
R19034 T26160 T26159 advmod either,were
R19035 T26161 T26162 punct (,A
R19036 T26162 T26159 dep A,were
R19037 T26163 T26162 punct ),A
R19038 T26164 T26124 conj left,infected
R19039 T26165 T26164 xcomp infected,left
R19040 T26166 T26165 prep with,infected
R19041 T26167 T26166 pobj virus,with
R19042 T26168 T26165 advmod alone,infected
R19043 T26169 T26165 cc or,infected
R19044 T26170 T26171 punct (,B
R19045 T26171 T26173 nmod B,co-infected
R19046 T26172 T26171 punct ),B
R19047 T26173 T26165 conj co-infected,infected
R19048 T26174 T26173 prep with,co-infected
R19049 T26175 T26176 compound MTb,CDC1551
R19050 T26176 T26174 pobj CDC1551,with
R19051 T26177 T26178 punct (,1
R19052 T26178 T26183 nummod 1,bacilli
R19053 T26179 T26183 punct ∶,bacilli
R19054 T26180 T26183 nummod 1,bacilli
R18992 T26118 T26124 nsubjpass MDM,infected
R18993 T26119 T26118 prep from,MDM
R18994 T26120 T26122 nummod four,donors
R18995 T26121 T26122 amod normal,donors
R19055 T26181 T26183 nmod MDM,bacilli
R19056 T26182 T26183 compound ∶,bacilli
R19057 T26183 T26124 npadvmod bacilli,infected
R19058 T26184 T26124 punct ),infected
R19059 T26185 T26124 punct .,infected

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T26075 205-208 Protein denotes Mut
T26074 202-204 Protein denotes N5
T26073 198-201 Protein denotes env
T26072 177-180 Protein denotes Mut
T26071 169-176 Protein denotes κB I+II
T26070 165-168 Protein denotes env
T26069 147-150 Protein denotes Mut
T26068 141-146 Protein denotes κB II
T26067 137-140 Protein denotes env
T26066 119-122 Protein denotes Mut
T26065 114-118 Protein denotes κB I
T26064 110-113 Protein denotes env
T26063 79-81 Protein denotes WT
T26062 75-78 Protein denotes env

testone

Id Subject Object Predicate Lexical cue
T25835 198-201 Protein denotes env
T25834 165-168 Protein denotes env
T25833 137-140 Protein denotes env
T25832 110-113 Protein denotes env
T25831 75-78 Protein denotes env

test3

Id Subject Object Predicate Lexical cue
T25851 198-201 Protein denotes env
T25850 165-168 Protein denotes env
T25849 137-140 Protein denotes env
T25848 110-113 Protein denotes env
T25847 75-78 Protein denotes env
T25843 198-201 Protein denotes env
T25842 165-168 Protein denotes env
T25841 137-140 Protein denotes env
T25840 110-113 Protein denotes env
T25839 75-78 Protein denotes env