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PMC:3320587 / 3554-3813 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-16622205-98010773 113-115 16622205 denotes 16
22496647-10426995-98010774 118-120 10426995 denotes 20

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1342 254-259 NN denotes IRAK1
T1341 244-253 VB denotes including
T1340 242-243 -COMMA- denotes ,
T1339 235-242 NN denotes kinases
T1338 227-234 JJ denotes several
T1337 224-226 IN denotes of
T1336 212-223 NN denotes recruitment
T1335 201-211 JJ denotes subsequent
T1334 197-200 DT denotes the
T1333 193-196 CC denotes and
T1332 187-192 NN denotes MyD88
T1331 179-186 NN denotes protein
T1330 171-178 NN denotes adaptor
T1329 167-170 DT denotes the
T1328 164-166 IN denotes of
T1327 153-163 NN denotes engagement
T1326 150-152 IN denotes in
T1325 142-149 VB denotes results
T1324 137-141 NN denotes TLR2
T1323 134-136 IN denotes of
T1322 123-133 NN denotes Engagement
T1321 120-121 -RRB- denotes ]
T1320 118-120 CD denotes 20
T1319 117-118 -LRB- denotes [
T1318 116-117 CD denotes –
T1317 115-116 -RRB- denotes ]
T1316 113-115 CD denotes 16
T1315 112-113 -LRB- denotes [
T1314 110-111 CD denotes 2
T1313 108-109 -RRB- denotes )
T1312 105-108 NN denotes TLR
T1311 104-105 -LRB- denotes (
T1310 95-103 NN denotes receptor
T1309 85-94 JJ denotes toll-like
T1308 82-84 VB denotes is
T1307 72-81 NN denotes infection
T1306 68-71 NN denotes MTb
T1305 65-67 IN denotes by
T1304 55-64 VB denotes triggered
T1303 49-54 NN denotes cells
T1302 39-48 JJ denotes monocytic
T1301 36-38 IN denotes on
T1300 32-35 NN denotes PRR
T1299 24-31 JJ denotes primary
T1298 20-23 DT denotes The
T1297 17-18 -RRB- denotes )
T1296 16-17 -RRB- denotes ]
T1295 15-16 CD denotes 8
T1294 14-15 -LRB- denotes [
T1293 11-13 IN denotes in
T1292 2-10 VB denotes reviewed
T1291 0-1 -COMMA- denotes ,
R860 T1292 T1293 arg1Of reviewed,in
R861 T1295 T1293 arg2Of 8,in
R862 T1295 T1294 arg2Of 8,[
R863 T1296 T1294 arg3Of ],[
R865 T1300 T1298 arg1Of PRR,The
R866 T1300 T1299 arg1Of PRR,primary
R867 T1300 T1301 arg1Of PRR,on
R868 T1300 T1308 arg1Of PRR,is
R869 T1303 T1301 arg2Of cells,on
R870 T1303 T1302 arg1Of cells,monocytic
R871 T1303 T1304 arg2Of cells,triggered
R872 T1307 T1304 arg1Of infection,triggered
R873 T1307 T1305 arg2Of infection,by
R874 T1307 T1306 arg1Of infection,MTb
R875 T1308 T1319 arg1Of is,[
R876 T1310 T1309 arg1Of receptor,toll-like
R877 T1310 T1311 arg1Of receptor,(
R878 T1310 T1314 arg1Of receptor,2
R879 T1312 T1311 arg2Of TLR,(
R880 T1313 T1311 arg3Of ),(
R881 T1316 T1315 arg2Of 16,[
R882 T1317 T1315 arg3Of ],[
R883 T1318 T1308 arg2Of –,is
R884 T1318 T1310 arg1Of –,receptor
R885 T1318 T1315 arg1Of –,[
R886 T1320 T1319 arg2Of 20,[
R887 T1321 T1319 arg3Of ],[
R888 T1322 T1323 arg1Of Engagement,of
R889 T1322 T1325 arg1Of Engagement,results
R890 T1324 T1323 arg2Of TLR2,of
R891 T1325 T1326 arg1Of results,in
R892 T1327 T1326 arg2Of engagement,in
R893 T1327 T1328 arg1Of engagement,of
R894 T1332 T1329 arg1Of MyD88,the
R895 T1332 T1330 arg1Of MyD88,adaptor
R896 T1332 T1331 arg1Of MyD88,protein
R897 T1332 T1333 arg1Of MyD88,and
R898 T1333 T1328 arg2Of and,of
R899 T1336 T1333 arg2Of recruitment,and
R900 T1336 T1334 arg1Of recruitment,the
R901 T1336 T1335 arg1Of recruitment,subsequent
R902 T1336 T1337 arg1Of recruitment,of
R903 T1339 T1337 arg2Of kinases,of
R904 T1339 T1338 arg1Of kinases,several
R905 T1339 T1340 arg1Of kinases,","
R906 T1339 T1341 arg1Of kinases,including

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T984 254-259 Protein denotes IRAK1
T983 187-192 Protein denotes MyD88
T982 137-141 Protein denotes TLR2
T981 85-111 Protein denotes toll-like receptor (TLR) 2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1775 187-192 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T1774 137-141 http://www.uniprot.org/uniprot/O60603 denotes TLR2

GO-CC

Id Subject Object Predicate Lexical cue
T1050 49-54 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T930 20-122 Sentence denotes The primary PRR on monocytic cells triggered by MTb infection is toll-like receptor (TLR) 2 [16]–[20].
T22 20-122 Sentence denotes The primary PRR on monocytic cells triggered by MTb infection is toll-like receptor (TLR) 2 [16]–[20].

simple1

Id Subject Object Predicate Lexical cue
T1078 254-259 Protein denotes IRAK1
T1077 187-192 Protein denotes MyD88
T1076 137-141 Protein denotes TLR2
T1075 85-111 Protein denotes toll-like receptor (TLR) 2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2688 153-163 Binding denotes engagement
T2687 123-133 Binding denotes Engagement
T2686 212-223 Binding denotes recruitment
T2672 254-259 Protein denotes IRAK1
T2671 187-192 Protein denotes MyD88
T2670 137-141 Protein denotes TLR2
T2669 85-111 Protein denotes toll-like receptor (TLR) 2
R2052 T2671 T2688 themeOf MyD88,engagement
R2062 T2672 T2688 themeOf IRAK1,engagement
R2034 T2670 T2687 themeOf TLR2,Engagement
R2043 T2671 T2686 themeOf MyD88,recruitment
R2047 T2671 T2686 themeOf MyD88,recruitment
R2050 T2671 T2686 themeOf MyD88,recruitment
R2057 T2672 T2686 themeOf IRAK1,recruitment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1867 153-163 Binding denotes engagement
T1866 123-133 Binding denotes Engagement
T1865 212-223 Binding denotes recruitment
T1851 254-259 Protein denotes IRAK1
T1850 187-192 Protein denotes MyD88
T1849 137-141 Protein denotes TLR2
T1848 85-111 Protein denotes toll-like receptor (TLR) 2
R1375 T1849 T1866 themeOf TLR2,Engagement
R1376 T1850 T1865 themeOf MyD88,recruitment
R1377 T1850 T1865 themeOf MyD88,recruitment
R1378 T1850 T1865 themeOf MyD88,recruitment
R1379 T1850 T1867 themeOf MyD88,engagement
R1380 T1851 T1865 themeOf IRAK1,recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T1816 212-223 Binding denotes recruitment
T1815 153-163 Binding denotes engagement
T1814 123-133 Binding denotes Engagement
T1800 254-259 Protein denotes IRAK1
T1799 187-192 Protein denotes MyD88
T1798 137-141 Protein denotes TLR2
T1797 85-111 Protein denotes toll-like receptor (TLR) 2
R1352 T1798 T1814 themeOf TLR2,Engagement
R1353 T1799 T1815 themeOf MyD88,engagement
R1354 T1799 T1816 themeOf MyD88,recruitment
R1355 T1799 T1816 themeOf MyD88,recruitment
R1356 T1799 T1816 themeOf MyD88,recruitment
R1357 T1800 T1816 themeOf IRAK1,recruitment

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2785 20-82 Localization denotes The primary PRR on monocytic cells triggered by MTb infection
T2778 65-81 Regulation denotes by MTb infection
T2777 20-81 Positive_regulation denotes The primary PRR on monocytic cells triggered by MTb infection
T2769 20-81 Protein denotes The primary PRR on monocytic cells triggered by MTb infection
T2737 137-141 Protein denotes TLR2
T2719 85-116 Protein denotes toll-like receptor (TLR) 2 [16]
T2714 68-71 Protein denotes MTb
T2710 254-259 Protein denotes IRAK1
T2699 187-192 Protein denotes MyD88
T2697 39-54 Entity denotes monocytic cells
R2107 T2697 T2785 locationOf monocytic cells,The primary PRR on monocytic cells triggered by MTb infection
R2142 T2714 T2778 themeOf MTb,by MTb infection
R2157 T2769 T2777 themeOf The primary PRR on monocytic cells triggered by MTb infection,The primary PRR on monocytic cells triggered by MTb infection
R2158 T2769 T2785 themeOf The primary PRR on monocytic cells triggered by MTb infection,The primary PRR on monocytic cells triggered by MTb infection
R2160 T2778 T2777 causeOf by MTb infection,The primary PRR on monocytic cells triggered by MTb infection

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2179 254-259 NNP denotes IRAK1
T2178 244-253 VBG denotes including
T2177 242-243 , denotes ,
T2176 235-242 NNS denotes kinases
T2175 227-234 JJ denotes several
T2174 224-226 IN denotes of
T2173 212-223 NN denotes recruitment
T2172 201-211 JJ denotes subsequent
T2171 197-200 DT denotes the
T2170 193-196 CC denotes and
T2169 187-192 NNP denotes MyD88
T2168 179-186 NN denotes protein
T2167 171-178 NN denotes adaptor
T2166 167-170 DT denotes the
T2165 164-166 IN denotes of
T2164 153-163 NN denotes engagement
T2163 150-152 IN denotes in
T2162 142-149 NNS denotes results
T2161 137-141 CD denotes TLR2
T2160 134-136 IN denotes of
T2159 123-133 NNP denotes Engagement
T2158 121-122 . denotes .
T2157 120-121 NNP denotes ]
T2156 118-120 CD denotes 20
T2155 117-118 NNP denotes [
T2154 115-116 NNP denotes ]
T2153 113-115 CD denotes 16
T2152 112-113 NNP denotes [
T2151 110-111 CD denotes 2
T2150 108-109 -RRB- denotes )
T2149 105-108 NNP denotes TLR
T2148 104-105 -LRB- denotes (
T2147 95-103 NN denotes receptor
T2146 85-94 JJ denotes toll-like
T2145 82-84 VBZ denotes is
T2144 72-81 NN denotes infection
T2143 68-71 NNP denotes MTb
T2142 65-67 IN denotes by
T2141 55-64 VBN denotes triggered
T2140 49-54 NNS denotes cells
T2139 39-48 JJ denotes monocytic
T2138 36-38 IN denotes on
T2137 32-35 NNP denotes PRR
T2136 24-31 JJ denotes primary
T2135 20-23 DT denotes The
T2134 18-19 . denotes .
T2133 17-18 -RRB- denotes )
T2132 16-17 NNP denotes ]
T2131 15-16 CD denotes 8
T2130 14-15 NN denotes [
T2129 11-13 IN denotes in
T2128 2-10 VBN denotes reviewed
T2127 0-1 , denotes ,
R1615 T2129 T2128 prep in,reviewed
R1616 T2130 T2132 compound [,]
R1617 T2131 T2132 nummod 8,]
R1618 T2132 T2129 pobj ],in
R1619 T2133 T2128 punct ),reviewed
R1622 T2135 T2137 det The,PRR
R1623 T2136 T2137 amod primary,PRR
R1624 T2137 T2145 nsubj PRR,is
R1625 T2138 T2137 prep on,PRR
R1627 T2139 T2140 amod monocytic,cells
R1628 T2140 T2138 pobj cells,on
R1630 T2141 T2140 acl triggered,cells
R1631 T2142 T2141 agent by,triggered
R1632 T2143 T2144 compound MTb,infection
R1634 T2144 T2142 pobj infection,by
R1635 T2145 T2145 ROOT is,is
R1636 T2146 T2147 amod toll-like,receptor
R1638 T2147 T2145 attr receptor,is
R1639 T2148 T2149 punct (,TLR
R1640 T2149 T2147 appos TLR,receptor
R1642 T2150 T2147 punct ),receptor
R1643 T2151 T2154 nummod 2,]
R1645 T2152 T2154 nmod [,]
R1646 T2153 T2154 nummod 16,]
R1647 T2154 T2155 nmod ],[
R1648 T2155 T2157 nmod [,]
R1650 T2156 T2157 nummod 20,]
R1651 T2157 T2145 npadvmod ],is
R1652 T2158 T2145 punct .,is
R1655 T2160 T2159 prep of,Engagement
R1656 T2161 T2162 nummod TLR2,results
R1658 T2162 T2160 pobj results,of
R1659 T2163 T2162 prep in,results
R1660 T2164 T2163 pobj engagement,in
R1662 T2165 T2164 prep of,engagement
R1664 T2166 T2168 det the,protein
R1666 T2167 T2168 compound adaptor,protein
R1667 T2168 T2165 pobj protein,of
R1668 T2169 T2168 appos MyD88,protein
R1669 T2170 T2164 cc and,engagement
R1671 T2171 T2173 det the,recruitment
R1672 T2172 T2173 amod subsequent,recruitment
R1673 T2173 T2164 conj recruitment,engagement
R1674 T2174 T2173 prep of,recruitment
R1676 T2175 T2176 amod several,kinases
R1677 T2176 T2174 pobj kinases,of
R1679 T2177 T2176 punct ",",kinases
R1680 T2178 T2176 prep including,kinases
R1682 T2179 T2178 pobj IRAK1,including

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1889 212-223 Binding denotes recruitment
T1888 153-163 Binding denotes engagement
T1887 153-163 Binding denotes engagement
T1884 254-259 Protein denotes IRAK1
T1883 187-192 Protein denotes MyD88
R1393 T1883 T1887 themeOf MyD88,engagement

testone

Id Subject Object Predicate Lexical cue
T875 212-223 Binding denotes recruitment
T874 153-163 Binding denotes engagement
T873 123-133 Binding denotes Engagement
T859 254-259 Protein denotes IRAK1
T858 187-192 Protein denotes MyD88
T857 137-141 Protein denotes TLR2
T856 85-111 Protein denotes toll-like receptor (TLR) 2
R607 T857 T873 themeOf TLR2,Engagement
R608 T857 T874 themeOf TLR2,engagement
R609 T858 T874 themeOf MyD88,engagement
R610 T859 T875 themeOf IRAK1,recruitment

test3

Id Subject Object Predicate Lexical cue
T907 254-259 Protein denotes IRAK1
T906 212-223 Binding denotes recruitment
T905 187-192 Protein denotes MyD88
T904 153-163 Binding denotes engagement
T903 137-141 Protein denotes TLR2
T902 123-133 Binding denotes Engagement
T901 85-111 Protein denotes toll-like receptor (TLR) 2
T885 254-259 Protein denotes IRAK1
T884 187-192 Protein denotes MyD88
T883 137-141 Protein denotes TLR2
T882 85-111 Protein denotes toll-like receptor (TLR) 2
R617 T903 T902 themeOf TLR2,Engagement
R619 T905 T904 themeOf MyD88,engagement
R620 T907 T906 themeOf IRAK1,recruitment
R618 T905 T906 themeOf MyD88,recruitment