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PMC:3320587 / 351-777 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T288 424-425 -LRB- denotes (
T287 415-423 NN denotes receptor
T286 405-414 JJ denotes Toll-like
T285 403-404 DT denotes a
T284 400-402 VB denotes is
T283 394-399 WDT denotes which
T282 392-393 -COMMA- denotes ,
T281 389-392 NN denotes MTb
T280 386-388 IN denotes by
T279 378-385 VB denotes induced
T278 369-377 RB denotes strongly
T277 365-368 VB denotes are
T276 354-364 NN denotes expression
T275 346-353 NN denotes protein
T274 342-345 CC denotes and
T273 337-341 NN denotes gene
T272 331-336 NN denotes NFAT5
T271 326-330 IN denotes that
T270 321-325 VB denotes show
T269 318-320 PRP denotes We
T268 305-316 NN denotes macrophages
T267 293-304 JJ denotes co-infected
T266 290-292 IN denotes in
T265 278-289 NN denotes replication
T264 272-277 NN denotes HIV-1
T263 260-271 JJ denotes -stimulated
T262 259-260 -RRB- denotes )
T261 256-259 NN denotes MTb
T260 255-256 -LRB- denotes (
T259 242-254 NN denotes tuberculosis
T258 228-241 NN denotes Mycobacterium
T257 219-227 VB denotes inhibits
T256 217-218 -RRB- denotes )
T255 213-217 NN denotes RNAi
T254 212-213 -LRB- denotes (
T253 199-211 NN denotes interference
T252 195-198 NN denotes RNA
T251 192-194 IN denotes by
T250 190-191 -RRB- denotes )
T249 185-190 NN denotes NFAT5
T248 184-185 -LRB- denotes (
T247 182-183 CD denotes 5
T246 176-181 NN denotes cells
T245 174-175 NN denotes T
T244 164-173 VB denotes activated
T243 161-163 IN denotes of
T242 154-160 NN denotes factor
T241 146-153 JJ denotes nuclear
T240 139-145 NN denotes factor
T239 125-138 NN denotes transcription
T238 121-124 DT denotes the
T237 118-120 IN denotes of
T236 107-117 NN denotes expression
T235 103-106 DT denotes the
T234 100-102 IN denotes of
T233 90-99 NN denotes silencing
T232 85-89 IN denotes that
T231 73-84 VB denotes demonstrate
T230 70-72 PRP denotes we
T229 68-69 -COMMA- denotes ,
T228 64-68 RB denotes Here
T227 58-62 NN denotes load
T226 52-57 JJ denotes viral
T225 49-51 IN denotes in
T224 40-48 NN denotes increase
T223 37-39 DT denotes an
T222 34-36 TO denotes to
T221 26-33 VB denotes leading
T220 24-25 -COMMA- denotes ,
T219 13-24 NN denotes replication
T218 7-12 NN denotes HIV-1
R51 T219 T218 arg1Of replication,HIV-1
R52 T221 T222 arg1Of leading,to
R53 T224 T222 arg2Of increase,to
R54 T224 T223 arg1Of increase,an
R55 T224 T225 arg1Of increase,in
R56 T227 T225 arg2Of load,in
R57 T227 T226 arg1Of load,viral
R58 T230 T231 arg1Of we,demonstrate
R59 T231 T228 arg1Of demonstrate,Here
R60 T231 T229 arg1Of demonstrate,","
R61 T233 T234 arg1Of silencing,of
R62 T233 T257 arg1Of silencing,inhibits
R63 T236 T234 arg2Of expression,of
R64 T236 T235 arg1Of expression,the
R65 T236 T237 arg1Of expression,of
R66 T242 T237 arg2Of factor,of
R67 T242 T238 arg1Of factor,the
R68 T242 T239 arg1Of factor,transcription
R69 T242 T240 arg1Of factor,factor
R70 T242 T241 arg1Of factor,nuclear
R71 T242 T243 arg1Of factor,of
R72 T242 T251 arg1Of factor,by
R73 T247 T243 arg2Of 5,of
R74 T247 T244 arg2Of 5,activated
R75 T247 T245 arg1Of 5,T
R76 T247 T246 arg1Of 5,cells
R77 T247 T248 arg1Of 5,(
R78 T249 T248 arg2Of NFAT5,(
R79 T250 T248 arg3Of ),(
R80 T253 T251 arg2Of interference,by
R81 T253 T252 arg1Of interference,RNA
R82 T253 T254 arg1Of interference,(
R83 T255 T254 arg2Of RNAi,(
R84 T256 T254 arg3Of ),(
R85 T257 T231 arg2Of inhibits,demonstrate
R86 T257 T232 arg1Of inhibits,that
R87 T261 T260 arg2Of MTb,(
R88 T262 T260 arg3Of ),(
R89 T265 T257 arg2Of replication,inhibits
R90 T265 T258 arg1Of replication,Mycobacterium
R91 T265 T259 arg1Of replication,tuberculosis
R92 T265 T260 arg1Of replication,(
R93 T265 T263 arg1Of replication,-stimulated
R94 T265 T264 arg1Of replication,HIV-1
R95 T265 T266 arg1Of replication,in
R96 T268 T266 arg2Of macrophages,in
R97 T268 T267 arg1Of macrophages,co-infected
R98 T269 T270 arg1Of We,show
R99 T273 T272 arg1Of gene,NFAT5
R100 T273 T274 arg1Of gene,and
R101 T274 T277 arg1Of and,are
R102 T274 T279 arg2Of and,induced
R103 T276 T274 arg2Of expression,and
R104 T276 T275 arg1Of expression,protein
R105 T279 T271 arg1Of induced,that
R106 T279 T277 arg2Of induced,are
R107 T279 T278 arg1Of induced,strongly
R109 T281 T279 arg1Of MTb,induced
R110 T281 T280 arg2Of MTb,by
R111 T281 T282 arg1Of MTb,","
R112 T281 T283 arg1Of MTb,which
R113 T281 T284 arg1Of MTb,is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T86 146-183 Protein denotes nuclear factor of activated T cells 5
T87 185-190 Protein denotes NFAT5
T88 331-336 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T412 185-190 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T413 331-336 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T104 213-217 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T103 195-211 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference
T99 125-138 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T119 176-181 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T59 64-317 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.
T5 64-317 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.

ICD10

Id Subject Object Predicate Lexical cue
T116 242-254 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis

simple1

Id Subject Object Predicate Lexical cue
T169 146-183 Protein denotes nuclear factor of activated T cells 5
T170 185-190 Protein denotes NFAT5
T171 331-336 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T756 146-183 Protein denotes nuclear factor of activated T cells 5
T757 185-190 Protein denotes NFAT5
T758 331-336 Protein denotes NFAT5
T767 90-99 Negative_regulation denotes silencing
T768 107-117 Gene_expression denotes expression
T769 378-385 Positive_regulation denotes induced
T770 354-364 Gene_expression denotes expression
R582 T757 T768 themeOf NFAT5,expression
R583 T758 T769 themeOf NFAT5,induced
R584 T758 T770 themeOf NFAT5,expression
R591 T768 T767 themeOf expression,silencing
R592 T770 T769 themeOf expression,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T442 146-183 Protein denotes nuclear factor of activated T cells 5
T443 185-190 Protein denotes NFAT5
T444 331-336 Protein denotes NFAT5
T452 107-117 Gene_expression denotes expression
T453 90-99 Negative_regulation denotes silencing
T454 378-385 Positive_regulation denotes induced
T455 354-364 Gene_expression denotes expression
R508 T443 T452 themeOf NFAT5,expression
R509 T444 T454 themeOf NFAT5,induced
R511 T444 T455 themeOf NFAT5,expression
R517 T452 T453 themeOf expression,silencing
R518 T455 T454 themeOf expression,induced

DLUT931

Id Subject Object Predicate Lexical cue
T434 378-385 Positive_regulation denotes induced
T422 146-183 Protein denotes nuclear factor of activated T cells 5
T423 185-190 Protein denotes NFAT5
T424 331-336 Protein denotes NFAT5
T432 107-117 Gene_expression denotes expression
T433 354-364 Gene_expression denotes expression
R500 T422 T432 themeOf nuclear factor of activated T cells 5,expression
R501 T423 T432 themeOf NFAT5,expression
R502 T424 T433 themeOf NFAT5,expression
R503 T424 T434 themeOf NFAT5,induced
R507 T433 T434 themeOf expression,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T821 118-227 Negative_regulation denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T816 346-364 Gene_expression denotes protein expression
T813 70-227 Negative_regulation denotes we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T812 100-227 Gene_expression denotes of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T810 386-392 Protein denotes by MTb
T809 331-341 Protein denotes NFAT5 gene
T786 293-316 Entity denotes co-infected macrophages
T795 118-227 Protein denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T797 146-191 Protein denotes nuclear factor of activated T cells 5 (NFAT5)
T800 331-336 Protein denotes NFAT5
T803 185-190 Protein denotes NFAT5
T804 256-259 Protein denotes MTb
T806 346-353 Protein denotes protein
R603 T795 T812 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R604 T795 T821 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R605 T797 T821 causeOf nuclear factor of activated T cells 5 (NFAT5),of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R606 T806 T816 themeOf protein,protein expression
R455 T812 T813 themeOf of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T627 424-425 -LRB- denotes (
T626 415-423 NN denotes receptor
T625 405-414 JJ denotes Toll-like
T624 403-404 DT denotes a
T623 400-402 VBZ denotes is
T622 394-399 WDT denotes which
T621 392-393 , denotes ,
T620 389-392 NNP denotes MTb
T619 386-388 IN denotes by
T618 378-385 VBN denotes induced
T617 369-377 RB denotes strongly
T616 365-368 VBP denotes are
T615 354-364 NN denotes expression
T614 346-353 NN denotes protein
T613 342-345 CC denotes and
T612 337-341 NN denotes gene
T611 331-336 CD denotes NFAT5
T610 326-330 IN denotes that
T609 321-325 VBP denotes show
T608 318-320 PRP denotes We
T607 316-317 . denotes .
T606 305-316 NNS denotes macrophages
T605 293-304 JJ denotes co-infected
T604 290-292 IN denotes in
T603 278-289 NN denotes replication
T602 272-277 NNP denotes HIV-1
T601 261-271 VBN denotes stimulated
T600 260-261 : denotes -
T599 259-260 -RRB- denotes )
T598 256-259 NNP denotes MTb
T597 255-256 -LRB- denotes (
T596 242-254 NN denotes tuberculosis
T595 228-241 NNP denotes Mycobacterium
T594 219-227 VBZ denotes inhibits
T593 217-218 -RRB- denotes )
T592 213-217 NNS denotes RNAi
T591 212-213 -LRB- denotes (
T590 199-211 NN denotes interference
T589 195-198 NNP denotes RNA
T588 192-194 IN denotes by
T568 73-84 VBP denotes demonstrate
T567 70-72 PRP denotes we
T566 68-69 , denotes ,
T565 64-68 RB denotes Here
T564 62-63 . denotes .
T563 58-62 NN denotes load
T562 52-57 JJ denotes viral
T561 49-51 IN denotes in
T560 40-48 NN denotes increase
T559 37-39 DT denotes an
T558 34-36 TO denotes to
T557 26-33 VBG denotes leading
T556 24-25 , denotes ,
T555 13-24 NN denotes replication
T554 7-12 JJ denotes HIV-1
T569 85-89 IN denotes that
T570 90-99 VBG denotes silencing
T571 100-102 IN denotes of
T572 103-106 DT denotes the
T573 107-117 NN denotes expression
T574 118-120 IN denotes of
T575 121-124 DT denotes the
T576 125-138 NN denotes transcription
T577 139-145 NN denotes factor
T578 146-153 JJ denotes nuclear
T579 154-160 NN denotes factor
T580 161-163 IN denotes of
T581 164-173 VBN denotes activated
T582 174-175 NNP denotes T
T583 176-181 NNS denotes cells
T584 182-183 CD denotes 5
T585 184-185 -LRB- denotes (
T586 185-190 CD denotes NFAT5
T587 190-191 -RRB- denotes )
R307 T554 T555 compound HIV-1,replication
R311 T558 T557 prep to,leading
R312 T559 T560 det an,increase
R313 T560 T558 pobj increase,to
R314 T561 T560 prep in,increase
R315 T562 T563 amod viral,load
R316 T563 T561 pobj load,in
R318 T565 T568 advmod Here,demonstrate
R319 T566 T568 punct ",",demonstrate
R320 T567 T568 nsubj we,demonstrate
R321 T568 T568 ROOT demonstrate,demonstrate
R322 T588 T570 prep by,silencing
R323 T589 T590 compound RNA,interference
R324 T590 T588 pobj interference,by
R325 T591 T592 punct (,RNAi
R326 T592 T570 appos RNAi,silencing
R327 T593 T570 punct ),silencing
R328 T594 T568 ccomp inhibits,demonstrate
R329 T595 T596 compound Mycobacterium,tuberculosis
R330 T596 T594 dobj tuberculosis,inhibits
R331 T597 T596 punct (,tuberculosis
R332 T598 T596 appos MTb,tuberculosis
R333 T599 T596 punct ),tuberculosis
R334 T600 T596 punct -,tuberculosis
R335 T601 T568 advcl stimulated,demonstrate
R336 T602 T603 compound HIV-1,replication
R337 T603 T601 dobj replication,stimulated
R338 T604 T603 prep in,replication
R339 T605 T606 amod co-infected,macrophages
R340 T606 T604 pobj macrophages,in
R341 T607 T568 punct .,demonstrate
R342 T608 T609 nsubj We,show
R343 T609 T609 ROOT show,show
R344 T610 T618 mark that,induced
R345 T611 T618 nsubjpass NFAT5,induced
R346 T612 T618 nsubjpass gene,induced
R347 T613 T612 cc and,gene
R348 T614 T615 compound protein,expression
R349 T615 T612 conj expression,gene
R350 T616 T618 auxpass are,induced
R351 T617 T618 advmod strongly,induced
R352 T618 T609 ccomp induced,show
R353 T619 T618 agent by,induced
R354 T620 T619 pobj MTb,by
R355 T621 T620 punct ",",MTb
R356 T622 T623 nsubj which,is
R357 T623 T620 relcl is,MTb
R358 T624 T626 det a,receptor
R359 T625 T626 amod Toll-like,receptor
R360 T626 T623 attr receptor,is
R527 T569 T594 mark that,inhibits
R528 T570 T594 csubj silencing,inhibits
R529 T571 T570 prep of,silencing
R530 T572 T573 det the,expression
R531 T573 T571 pobj expression,of
R532 T574 T573 prep of,expression
R533 T575 T577 det the,factor
R534 T576 T577 compound transcription,factor
R535 T577 T574 pobj factor,of
R536 T578 T579 amod nuclear,factor
R537 T579 T573 conj factor,expression
R538 T580 T573 prep of,expression
R539 T581 T583 amod activated,cells
R540 T582 T583 compound T,cells
R541 T583 T580 pobj cells,of
R542 T584 T570 nummod 5,silencing
R543 T585 T586 punct (,NFAT5
R544 T586 T584 prep NFAT5,5
R545 T587 T584 punct ),5

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T135 378-385 Positive_regulation denotes induced
T134 378-385 Positive_regulation denotes induced
T133 354-364 Gene_expression denotes expression
T131 331-341 Protein denotes NFAT5 gene
T130 90-99 Negative_regulation denotes silencing
T129 90-99 Negative_regulation denotes silencing
T128 90-99 Negative_regulation denotes silencing
T127 107-117 Gene_expression denotes expression
T122 125-160 Protein denotes transcription factor nuclear factor
T123 164-183 Protein denotes activated T cells 5
T124 185-190 Protein denotes NFAT5
T125 107-117 Gene_expression denotes expression
T126 107-117 Gene_expression denotes expression
R22 T133 T135 themeOf expression,induced
R19 T127 T130 themeOf expression,silencing
R20 T131 T133 themeOf NFAT5 gene,expression
R21 T131 T134 themeOf NFAT5 gene,induced
R466 T122 T125 themeOf transcription factor nuclear factor,expression
R467 T123 T126 themeOf activated T cells 5,expression
R468 T124 T127 themeOf NFAT5,expression
R469 T125 T128 themeOf expression,silencing
R470 T126 T129 themeOf expression,silencing

testone

Id Subject Object Predicate Lexical cue
T24 378-385 Positive_regulation denotes induced
T23 90-99 Negative_regulation denotes silencing
T15 331-336 Protein denotes NFAT5
T14 185-190 Protein denotes NFAT5
T13 146-183 Protein denotes nuclear factor of activated T cells 5
R1 T14 T13 equivalentTo NFAT5,nuclear factor of activated T cells 5

test3

Id Subject Object Predicate Lexical cue
T45 185-190 Protein denotes NFAT5
T44 146-183 Protein denotes nuclear factor of activated T cells 5
T35 331-336 Protein denotes NFAT5
T34 185-190 Protein denotes NFAT5
T33 146-183 Protein denotes nuclear factor of activated T cells 5
T47 378-385 Positive_regulation denotes induced
T46 331-336 Protein denotes NFAT5
R11 T45 T44 equivalentTo NFAT5,nuclear factor of activated T cells 5
R12 T46 T47 themeOf NFAT5,induced