PMC:3320587 / 34074-34293
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25441 | 205-209 | NN | denotes | PBMC |
| T25440 | 203-204 | -RRB- | denotes | ) |
| T25439 | 199-203 | NN | denotes | bars |
| T25438 | 193-198 | JJ | denotes | black |
| T25437 | 192-193 | -LRB- | denotes | ( |
| T25436 | 180-191 | JJ | denotes | co-infected |
| T25435 | 176-179 | NN | denotes | MTb |
| T25434 | 172-175 | CC | denotes | and |
| T25433 | 170-171 | -RRB- | denotes | ) |
| T25432 | 166-170 | NN | denotes | bars |
| T25431 | 161-165 | JJ | denotes | grey |
| T25430 | 160-161 | -LRB- | denotes | ( |
| T25429 | 149-159 | JJ | denotes | uninfected |
| T25428 | 145-148 | NN | denotes | MTb |
| T25427 | 141-144 | DT | denotes | the |
| T25426 | 138-140 | IN | denotes | in |
| T25425 | 135-137 | CD | denotes | 12 |
| T25424 | 131-134 | NN | denotes | day |
| T25423 | 128-130 | IN | denotes | at |
| T25422 | 121-127 | NN | denotes | levels |
| T25421 | 117-120 | NN | denotes | p24 |
| T25420 | 111-116 | JJ | denotes | viral |
| T25419 | 106-110 | VB | denotes | show |
| T25418 | 95-105 | NN | denotes | Histograms |
| T25417 | 93-94 | -RRB- | denotes | ) |
| T25416 | 92-93 | NN | denotes | C |
| T25415 | 91-92 | -LRB- | denotes | ( |
| T25414 | 75-90 | JJ | denotes | post-infection. |
| T25413 | 72-74 | CD | denotes | 12 |
| T25412 | 68-71 | CC | denotes | and |
| T25411 | 66-67 | CD | denotes | 7 |
| T25410 | 64-65 | -COMMA- | denotes | , |
| T25409 | 63-64 | CD | denotes | 4 |
| T25408 | 58-62 | NN | denotes | days |
| T25407 | 55-57 | IN | denotes | at |
| T25406 | 46-54 | VB | denotes | measured |
| T25405 | 41-45 | VB | denotes | were |
| T25404 | 28-40 | NN | denotes | supernatants |
| T25403 | 20-27 | NN | denotes | culture |
| T25402 | 17-19 | IN | denotes | in |
| T25401 | 10-16 | NN | denotes | levels |
| T25400 | 6-9 | NN | denotes | p24 |
| T25399 | 0-5 | JJ | denotes | Viral |
| T25442 | 210-218 | NN | denotes | cultures |
| R18537 | T25401 | T25399 | arg1Of | levels,Viral |
| R18538 | T25401 | T25400 | arg1Of | levels,p24 |
| R18539 | T25401 | T25402 | arg1Of | levels,in |
| R18540 | T25401 | T25405 | arg1Of | levels,were |
| R18541 | T25401 | T25406 | arg2Of | levels,measured |
| R18542 | T25404 | T25402 | arg2Of | supernatants,in |
| R18543 | T25404 | T25403 | arg1Of | supernatants,culture |
| R18544 | T25406 | T25405 | arg2Of | measured,were |
| R18545 | T25406 | T25407 | arg1Of | measured,at |
| R18546 | T25406 | T25410 | arg1Of | measured,"," |
| R18547 | T25409 | T25407 | arg2Of | 4,at |
| R18548 | T25409 | T25408 | arg1Of | 4,days |
| R18549 | T25411 | T25412 | arg1Of | 7,and |
| R18550 | T25413 | T25412 | arg2Of | 12,and |
| R18551 | T25416 | T25415 | arg2Of | C,( |
| R18552 | T25417 | T25415 | arg3Of | ),( |
| R18553 | T25418 | T25411 | arg1Of | Histograms,7 |
| R18554 | T25418 | T25413 | arg1Of | Histograms,12 |
| R18555 | T25418 | T25414 | arg1Of | Histograms,post-infection. |
| R18556 | T25418 | T25415 | arg1Of | Histograms,( |
| R18557 | T25418 | T25419 | arg1Of | Histograms,show |
| R18558 | T25419 | T25410 | arg2Of | show,"," |
| R18559 | T25419 | T25423 | arg1Of | show,at |
| R18560 | T25419 | T25426 | arg1Of | show,in |
| R18561 | T25422 | T25419 | arg2Of | levels,show |
| R18562 | T25422 | T25420 | arg1Of | levels,viral |
| R18563 | T25422 | T25421 | arg1Of | levels,p24 |
| R18564 | T25424 | T25423 | arg2Of | day,at |
| R18565 | T25424 | T25425 | arg1Of | day,12 |
| R18566 | T25429 | T25428 | arg1Of | uninfected,MTb |
| R18567 | T25432 | T25427 | arg1Of | bars,the |
| R18568 | T25432 | T25429 | arg1Of | bars,uninfected |
| R18569 | T25432 | T25430 | arg2Of | bars,( |
| R18570 | T25432 | T25431 | arg1Of | bars,grey |
| R18571 | T25432 | T25434 | arg1Of | bars,and |
| R18572 | T25433 | T25430 | arg3Of | ),( |
| R18573 | T25434 | T25426 | arg2Of | and,in |
| R18574 | T25436 | T25437 | arg1Of | co-infected,( |
| R18575 | T25439 | T25437 | arg2Of | bars,( |
| R18576 | T25439 | T25438 | arg1Of | bars,black |
| R18577 | T25440 | T25437 | arg3Of | ),( |
| R18578 | T25442 | T25434 | arg2Of | cultures,and |
| R18579 | T25442 | T25435 | arg1Of | cultures,MTb |
| R18580 | T25442 | T25436 | arg1Of | cultures,co-infected |
| R18581 | T25442 | T25441 | arg1Of | cultures,PBMC |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25292 | 117-120 | Protein | denotes | p24 |
| T25291 | 6-9 | Protein | denotes | p24 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25498 | 117-120 | http://www.uniprot.org/uniprot/P03366 | denotes | p24 |
| T25497 | 6-9 | http://www.uniprot.org/uniprot/P03366 | denotes | p24 |
| T25496 | 117-120 | http://www.uniprot.org/uniprot/P04585 | denotes | p24 |
| T25495 | 6-9 | http://www.uniprot.org/uniprot/P04585 | denotes | p24 |
| T25494 | 117-120 | http://www.uniprot.org/uniprot/P12497 | denotes | p24 |
| T25493 | 6-9 | http://www.uniprot.org/uniprot/P12497 | denotes | p24 |
| T25492 | 117-120 | http://www.uniprot.org/uniprot/P04591 | denotes | p24 |
| T25491 | 6-9 | http://www.uniprot.org/uniprot/P04591 | denotes | p24 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25274 | 0-219 | Sentence | denotes | Viral p24 levels in culture supernatants were measured at days 4, 7 and 12 post-infection. (C) Histograms show viral p24 levels at day 12 in the MTb uninfected (grey bars) and MTb co-infected (black bars) PBMC cultures. |
| T200 | 0-219 | Sentence | denotes | Viral p24 levels in culture supernatants were measured at days 4, 7 and 12 post-infection. (C) Histograms show viral p24 levels at day 12 in the MTb uninfected (grey bars) and MTb co-infected (black bars) PBMC cultures. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25310 | 117-120 | Protein | denotes | p24 |
| T25309 | 6-9 | Protein | denotes | p24 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25789 | 117-120 | Protein | denotes | p24 |
| T25788 | 6-9 | Protein | denotes | p24 |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25516 | 117-120 | Protein | denotes | p24 |
| T25515 | 6-9 | Protein | denotes | p24 |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25506 | 117-120 | Protein | denotes | p24 |
| T25505 | 6-9 | Protein | denotes | p24 |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25813 | 176-204 | Regulation | denotes | MTb co-infected (black bars) |
| T25810 | 6-9 | Protein | denotes | p24 |
| T25807 | 20-40 | Entity | denotes | culture supernatants |
| T25800 | 205-209 | Entity | denotes | PBMC |
| T25797 | 176-204 | Protein | denotes | MTb co-infected (black bars) |
| T25796 | 141-171 | Protein | denotes | the MTb uninfected (grey bars) |
| T25792 | 117-120 | Protein | denotes | p24 |
| R18839 | T25797 | T25813 | themeOf | MTb co-infected (black bars),MTb co-infected (black bars) |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25736 | 218-219 | . | denotes | . |
| T25735 | 210-218 | NNS | denotes | cultures |
| T25734 | 205-209 | NNP | denotes | PBMC |
| T25733 | 203-204 | -RRB- | denotes | ) |
| T25732 | 199-203 | NNS | denotes | bars |
| T25731 | 193-198 | JJ | denotes | black |
| T25730 | 192-193 | -LRB- | denotes | ( |
| T25729 | 180-191 | VBD | denotes | co-infected |
| T25728 | 176-179 | NNP | denotes | MTb |
| T25727 | 172-175 | CC | denotes | and |
| T25726 | 170-171 | -RRB- | denotes | ) |
| T25725 | 166-170 | NNS | denotes | bars |
| T25724 | 161-165 | JJ | denotes | grey |
| T25723 | 160-161 | -LRB- | denotes | ( |
| T25722 | 149-159 | JJ | denotes | uninfected |
| T25721 | 145-148 | NNP | denotes | MTb |
| T25720 | 141-144 | DT | denotes | the |
| T25719 | 138-140 | IN | denotes | in |
| T25718 | 135-137 | CD | denotes | 12 |
| T25717 | 131-134 | NN | denotes | day |
| T25716 | 128-130 | IN | denotes | at |
| T25715 | 121-127 | NNS | denotes | levels |
| T25714 | 117-120 | JJ | denotes | p24 |
| T25713 | 111-116 | JJ | denotes | viral |
| T25712 | 106-110 | VBP | denotes | show |
| T25711 | 95-105 | NNPS | denotes | Histograms |
| T25710 | 93-94 | -RRB- | denotes | ) |
| T25709 | 92-93 | $ | denotes | C |
| T25708 | 91-92 | -LRB- | denotes | ( |
| T25707 | 89-90 | . | denotes | . |
| T25706 | 75-89 | NN | denotes | post-infection |
| T25705 | 72-74 | CD | denotes | 12 |
| T25704 | 68-71 | CC | denotes | and |
| T25703 | 66-67 | CD | denotes | 7 |
| T25702 | 64-65 | , | denotes | , |
| T25701 | 63-64 | CD | denotes | 4 |
| T25700 | 58-62 | NNS | denotes | days |
| T25699 | 55-57 | IN | denotes | at |
| T25698 | 46-54 | VBN | denotes | measured |
| T25697 | 41-45 | VBD | denotes | were |
| T25696 | 28-40 | NNS | denotes | supernatants |
| T25695 | 20-27 | NN | denotes | culture |
| T25694 | 17-19 | IN | denotes | in |
| T25693 | 10-16 | NNS | denotes | levels |
| T25692 | 6-9 | NN | denotes | p24 |
| T25691 | 0-5 | JJ | denotes | Viral |
| R18746 | T25691 | T25693 | amod | Viral,levels |
| R18747 | T25692 | T25693 | compound | p24,levels |
| R18748 | T25693 | T25698 | nsubjpass | levels,measured |
| R18749 | T25694 | T25693 | prep | in,levels |
| R18750 | T25695 | T25694 | pobj | culture,in |
| R18751 | T25696 | T25698 | nsubjpass | supernatants,measured |
| R18752 | T25697 | T25698 | auxpass | were,measured |
| R18753 | T25698 | T25698 | ROOT | measured,measured |
| R18754 | T25699 | T25698 | prep | at,measured |
| R18755 | T25700 | T25699 | pobj | days,at |
| R18756 | T25701 | T25700 | nummod | 4,days |
| R18757 | T25702 | T25700 | punct | ",",days |
| R18758 | T25703 | T25700 | conj | 7,days |
| R18759 | T25704 | T25703 | cc | and,7 |
| R18760 | T25705 | T25706 | nummod | 12,post-infection |
| R18761 | T25706 | T25703 | conj | post-infection,7 |
| R18762 | T25707 | T25698 | punct | .,measured |
| R18763 | T25708 | T25709 | punct | (,C |
| R18764 | T25709 | T25709 | ROOT | C,C |
| R18765 | T25710 | T25709 | punct | ),C |
| R18766 | T25711 | T25712 | nsubj | Histograms,show |
| R18767 | T25712 | T25712 | ROOT | show,show |
| R18768 | T25713 | T25715 | amod | viral,levels |
| R18769 | T25714 | T25715 | amod | p24,levels |
| R18770 | T25715 | T25712 | dobj | levels,show |
| R18771 | T25716 | T25712 | prep | at,show |
| R18772 | T25717 | T25716 | pobj | day,at |
| R18773 | T25718 | T25717 | nummod | 12,day |
| R18774 | T25719 | T25712 | prep | in,show |
| R18775 | T25720 | T25722 | det | the,uninfected |
| R18776 | T25721 | T25722 | compound | MTb,uninfected |
| R18777 | T25722 | T25719 | pobj | uninfected,in |
| R18778 | T25723 | T25725 | punct | (,bars |
| R18779 | T25724 | T25725 | amod | grey,bars |
| R18780 | T25725 | T25722 | appos | bars,uninfected |
| R18781 | T25726 | T25725 | punct | ),bars |
| R18782 | T25727 | T25712 | cc | and,show |
| R18783 | T25728 | T25729 | compound | MTb,co-infected |
| R18784 | T25729 | T25712 | conj | co-infected,show |
| R18785 | T25730 | T25732 | punct | (,bars |
| R18786 | T25731 | T25732 | amod | black,bars |
| R18787 | T25732 | T25729 | appos | bars,co-infected |
| R18788 | T25733 | T25729 | punct | ),co-infected |
| R18789 | T25734 | T25735 | compound | PBMC,cultures |
| R18790 | T25735 | T25735 | ROOT | cultures,cultures |
| R18791 | T25736 | T25735 | punct | .,cultures |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25553 | 117-120 | Protein | denotes | p24 |
| T25552 | 6-9 | Protein | denotes | p24 |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25251 | 6-9 | Protein | denotes | p24 |
| T25252 | 117-120 | Protein | denotes | p24 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25270 | 117-120 | Protein | denotes | p24 |
| T25269 | 6-9 | Protein | denotes | p24 |
| T25261 | 117-120 | Protein | denotes | p24 |
| T25260 | 6-9 | Protein | denotes | p24 |