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PMC:3320587 / 338-764 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T285 416-417 DT denotes a
T284 413-415 VB denotes is
T283 407-412 WDT denotes which
T282 405-406 -COMMA- denotes ,
T281 402-405 NN denotes MTb
T280 399-401 IN denotes by
T279 391-398 VB denotes induced
T278 382-390 RB denotes strongly
T277 378-381 VB denotes are
T276 367-377 NN denotes expression
T275 359-366 NN denotes protein
T274 355-358 CC denotes and
T273 350-354 NN denotes gene
T272 344-349 NN denotes NFAT5
T271 339-343 IN denotes that
T270 334-338 VB denotes show
T269 331-333 PRP denotes We
T268 318-329 NN denotes macrophages
T267 306-317 JJ denotes co-infected
T266 303-305 IN denotes in
T265 291-302 NN denotes replication
T264 285-290 NN denotes HIV-1
T263 273-284 JJ denotes -stimulated
T262 272-273 -RRB- denotes )
T261 269-272 NN denotes MTb
T260 268-269 -LRB- denotes (
T259 255-267 NN denotes tuberculosis
T258 241-254 NN denotes Mycobacterium
T257 232-240 VB denotes inhibits
T256 230-231 -RRB- denotes )
T255 226-230 NN denotes RNAi
T254 225-226 -LRB- denotes (
T253 212-224 NN denotes interference
T252 208-211 NN denotes RNA
T251 205-207 IN denotes by
T250 203-204 -RRB- denotes )
T249 198-203 NN denotes NFAT5
T248 197-198 -LRB- denotes (
T247 195-196 CD denotes 5
T246 189-194 NN denotes cells
T245 187-188 NN denotes T
T244 177-186 VB denotes activated
T243 174-176 IN denotes of
T242 167-173 NN denotes factor
T241 159-166 JJ denotes nuclear
T240 152-158 NN denotes factor
T239 138-151 NN denotes transcription
T238 134-137 DT denotes the
T237 131-133 IN denotes of
T236 120-130 NN denotes expression
T235 116-119 DT denotes the
T234 113-115 IN denotes of
T233 103-112 NN denotes silencing
T232 98-102 IN denotes that
T231 86-97 VB denotes demonstrate
T230 83-85 PRP denotes we
T229 81-82 -COMMA- denotes ,
T228 77-81 RB denotes Here
T227 71-75 NN denotes load
T226 65-70 JJ denotes viral
T225 62-64 IN denotes in
T224 53-61 NN denotes increase
T223 50-52 DT denotes an
T222 47-49 TO denotes to
T221 39-46 VB denotes leading
T220 37-38 -COMMA- denotes ,
T219 26-37 NN denotes replication
T218 20-25 NN denotes HIV-1
T217 10-19 VB denotes stimulate
T216 5-9 WDT denotes that
R48 T217 T220 arg1Of stimulate,","
R49 T217 T221 modOf stimulate,leading
R50 T219 T217 arg2Of replication,stimulate
R51 T219 T218 arg1Of replication,HIV-1
R52 T221 T222 arg1Of leading,to
R53 T224 T222 arg2Of increase,to
R54 T224 T223 arg1Of increase,an
R55 T224 T225 arg1Of increase,in
R56 T227 T225 arg2Of load,in
R57 T227 T226 arg1Of load,viral
R58 T230 T231 arg1Of we,demonstrate
R59 T231 T228 arg1Of demonstrate,Here
R60 T231 T229 arg1Of demonstrate,","
R61 T233 T234 arg1Of silencing,of
R62 T233 T257 arg1Of silencing,inhibits
R63 T236 T234 arg2Of expression,of
R64 T236 T235 arg1Of expression,the
R65 T236 T237 arg1Of expression,of
R66 T242 T237 arg2Of factor,of
R67 T242 T238 arg1Of factor,the
R68 T242 T239 arg1Of factor,transcription
R69 T242 T240 arg1Of factor,factor
R70 T242 T241 arg1Of factor,nuclear
R71 T242 T243 arg1Of factor,of
R72 T242 T251 arg1Of factor,by
R73 T247 T243 arg2Of 5,of
R74 T247 T244 arg2Of 5,activated
R75 T247 T245 arg1Of 5,T
R76 T247 T246 arg1Of 5,cells
R77 T247 T248 arg1Of 5,(
R78 T249 T248 arg2Of NFAT5,(
R79 T250 T248 arg3Of ),(
R80 T253 T251 arg2Of interference,by
R81 T253 T252 arg1Of interference,RNA
R82 T253 T254 arg1Of interference,(
R83 T255 T254 arg2Of RNAi,(
R84 T256 T254 arg3Of ),(
R85 T257 T231 arg2Of inhibits,demonstrate
R86 T257 T232 arg1Of inhibits,that
R87 T261 T260 arg2Of MTb,(
R88 T262 T260 arg3Of ),(
R89 T265 T257 arg2Of replication,inhibits
R90 T265 T258 arg1Of replication,Mycobacterium
R91 T265 T259 arg1Of replication,tuberculosis
R92 T265 T260 arg1Of replication,(
R93 T265 T263 arg1Of replication,-stimulated
R94 T265 T264 arg1Of replication,HIV-1
R95 T265 T266 arg1Of replication,in
R96 T268 T266 arg2Of macrophages,in
R97 T268 T267 arg1Of macrophages,co-infected
R98 T269 T270 arg1Of We,show
R99 T273 T272 arg1Of gene,NFAT5
R100 T273 T274 arg1Of gene,and
R101 T274 T277 arg1Of and,are
R102 T274 T279 arg2Of and,induced
R103 T276 T274 arg2Of expression,and
R104 T276 T275 arg1Of expression,protein
R105 T279 T271 arg1Of induced,that
R106 T279 T277 arg2Of induced,are
R107 T279 T278 arg1Of induced,strongly
R109 T281 T279 arg1Of MTb,induced
R110 T281 T280 arg2Of MTb,by
R111 T281 T282 arg1Of MTb,","
R112 T281 T283 arg1Of MTb,which
R113 T281 T284 arg1Of MTb,is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T86 159-196 Protein denotes nuclear factor of activated T cells 5
T87 198-203 Protein denotes NFAT5
T88 344-349 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T412 198-203 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T413 344-349 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T104 226-230 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi
T103 208-224 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference
T99 138-151 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T119 189-194 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T59 77-330 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.
T5 77-330 Sentence denotes Here, we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits Mycobacterium tuberculosis (MTb)-stimulated HIV-1 replication in co-infected macrophages.

ICD10

Id Subject Object Predicate Lexical cue
T116 255-267 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis

simple1

Id Subject Object Predicate Lexical cue
T169 159-196 Protein denotes nuclear factor of activated T cells 5
T170 198-203 Protein denotes NFAT5
T171 344-349 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T756 159-196 Protein denotes nuclear factor of activated T cells 5
T757 198-203 Protein denotes NFAT5
T758 344-349 Protein denotes NFAT5
T767 103-112 Negative_regulation denotes silencing
T768 120-130 Gene_expression denotes expression
T769 391-398 Positive_regulation denotes induced
T770 367-377 Gene_expression denotes expression
R582 T757 T768 themeOf NFAT5,expression
R583 T758 T769 themeOf NFAT5,induced
R584 T758 T770 themeOf NFAT5,expression
R591 T768 T767 themeOf expression,silencing
R592 T770 T769 themeOf expression,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T442 159-196 Protein denotes nuclear factor of activated T cells 5
T443 198-203 Protein denotes NFAT5
T444 344-349 Protein denotes NFAT5
T452 120-130 Gene_expression denotes expression
T453 103-112 Negative_regulation denotes silencing
T454 391-398 Positive_regulation denotes induced
T455 367-377 Gene_expression denotes expression
R508 T443 T452 themeOf NFAT5,expression
R509 T444 T454 themeOf NFAT5,induced
R511 T444 T455 themeOf NFAT5,expression
R517 T452 T453 themeOf expression,silencing
R518 T455 T454 themeOf expression,induced

DLUT931

Id Subject Object Predicate Lexical cue
T434 391-398 Positive_regulation denotes induced
T422 159-196 Protein denotes nuclear factor of activated T cells 5
T423 198-203 Protein denotes NFAT5
T424 344-349 Protein denotes NFAT5
T432 120-130 Gene_expression denotes expression
T433 367-377 Gene_expression denotes expression
R500 T422 T432 themeOf nuclear factor of activated T cells 5,expression
R501 T423 T432 themeOf NFAT5,expression
R502 T424 T433 themeOf NFAT5,expression
R503 T424 T434 themeOf NFAT5,induced
R507 T433 T434 themeOf expression,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T821 131-240 Negative_regulation denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T816 359-377 Gene_expression denotes protein expression
T813 83-240 Negative_regulation denotes we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T812 113-240 Gene_expression denotes of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T810 399-405 Protein denotes by MTb
T809 344-354 Protein denotes NFAT5 gene
T786 306-329 Entity denotes co-infected macrophages
T795 131-240 Protein denotes of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
T797 159-204 Protein denotes nuclear factor of activated T cells 5 (NFAT5)
T800 344-349 Protein denotes NFAT5
T803 198-203 Protein denotes NFAT5
T804 269-272 Protein denotes MTb
T806 359-366 Protein denotes protein
R603 T795 T812 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R604 T795 T821 themeOf of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R605 T797 T821 causeOf nuclear factor of activated T cells 5 (NFAT5),of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits
R606 T806 T816 themeOf protein,protein expression
R455 T812 T813 themeOf of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits,we demonstrate that silencing of the expression of the transcription factor nuclear factor of activated T cells 5 (NFAT5) by RNA interference (RNAi) inhibits

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T624 416-417 DT denotes a
T623 413-415 VBZ denotes is
T622 407-412 WDT denotes which
T621 405-406 , denotes ,
T620 402-405 NNP denotes MTb
T619 399-401 IN denotes by
T618 391-398 VBN denotes induced
T617 382-390 RB denotes strongly
T616 378-381 VBP denotes are
T615 367-377 NN denotes expression
T614 359-366 NN denotes protein
T613 355-358 CC denotes and
T612 350-354 NN denotes gene
T611 344-349 CD denotes NFAT5
T610 339-343 IN denotes that
T609 334-338 VBP denotes show
T608 331-333 PRP denotes We
T607 329-330 . denotes .
T606 318-329 NNS denotes macrophages
T605 306-317 JJ denotes co-infected
T604 303-305 IN denotes in
T603 291-302 NN denotes replication
T602 285-290 NNP denotes HIV-1
T601 274-284 VBN denotes stimulated
T600 273-274 : denotes -
T599 272-273 -RRB- denotes )
T598 269-272 NNP denotes MTb
T597 268-269 -LRB- denotes (
T596 255-267 NN denotes tuberculosis
T595 241-254 NNP denotes Mycobacterium
T594 232-240 VBZ denotes inhibits
T593 230-231 -RRB- denotes )
T592 226-230 NNS denotes RNAi
T591 225-226 -LRB- denotes (
T590 212-224 NN denotes interference
T589 208-211 NNP denotes RNA
T588 205-207 IN denotes by
T568 86-97 VBP denotes demonstrate
T567 83-85 PRP denotes we
T566 81-82 , denotes ,
T565 77-81 RB denotes Here
T564 75-76 . denotes .
T563 71-75 NN denotes load
T562 65-70 JJ denotes viral
T561 62-64 IN denotes in
T560 53-61 NN denotes increase
T559 50-52 DT denotes an
T558 47-49 TO denotes to
T557 39-46 VBG denotes leading
T556 37-38 , denotes ,
T555 26-37 NN denotes replication
T554 20-25 JJ denotes HIV-1
T553 10-19 VBP denotes stimulate
T552 5-9 WDT denotes that
T569 98-102 IN denotes that
T570 103-112 VBG denotes silencing
T571 113-115 IN denotes of
T572 116-119 DT denotes the
T573 120-130 NN denotes expression
T574 131-133 IN denotes of
T575 134-137 DT denotes the
T576 138-151 NN denotes transcription
T577 152-158 NN denotes factor
T578 159-166 JJ denotes nuclear
T579 167-173 NN denotes factor
T580 174-176 IN denotes of
T581 177-186 VBN denotes activated
T582 187-188 NNP denotes T
T583 189-194 NNS denotes cells
T584 195-196 CD denotes 5
T585 197-198 -LRB- denotes (
T586 198-203 CD denotes NFAT5
T587 203-204 -RRB- denotes )
R305 T552 T553 nsubj that,stimulate
R307 T554 T555 compound HIV-1,replication
R308 T555 T553 dobj replication,stimulate
R311 T558 T557 prep to,leading
R312 T559 T560 det an,increase
R313 T560 T558 pobj increase,to
R314 T561 T560 prep in,increase
R315 T562 T563 amod viral,load
R316 T563 T561 pobj load,in
R318 T565 T568 advmod Here,demonstrate
R319 T566 T568 punct ",",demonstrate
R320 T567 T568 nsubj we,demonstrate
R321 T568 T568 ROOT demonstrate,demonstrate
R322 T588 T570 prep by,silencing
R323 T589 T590 compound RNA,interference
R324 T590 T588 pobj interference,by
R325 T591 T592 punct (,RNAi
R326 T592 T570 appos RNAi,silencing
R327 T593 T570 punct ),silencing
R328 T594 T568 ccomp inhibits,demonstrate
R329 T595 T596 compound Mycobacterium,tuberculosis
R330 T596 T594 dobj tuberculosis,inhibits
R331 T597 T596 punct (,tuberculosis
R332 T598 T596 appos MTb,tuberculosis
R333 T599 T596 punct ),tuberculosis
R334 T600 T596 punct -,tuberculosis
R335 T601 T568 advcl stimulated,demonstrate
R336 T602 T603 compound HIV-1,replication
R337 T603 T601 dobj replication,stimulated
R338 T604 T603 prep in,replication
R339 T605 T606 amod co-infected,macrophages
R340 T606 T604 pobj macrophages,in
R341 T607 T568 punct .,demonstrate
R342 T608 T609 nsubj We,show
R343 T609 T609 ROOT show,show
R344 T610 T618 mark that,induced
R345 T611 T618 nsubjpass NFAT5,induced
R346 T612 T618 nsubjpass gene,induced
R347 T613 T612 cc and,gene
R348 T614 T615 compound protein,expression
R349 T615 T612 conj expression,gene
R350 T616 T618 auxpass are,induced
R351 T617 T618 advmod strongly,induced
R352 T618 T609 ccomp induced,show
R353 T619 T618 agent by,induced
R354 T620 T619 pobj MTb,by
R355 T621 T620 punct ",",MTb
R356 T622 T623 nsubj which,is
R357 T623 T620 relcl is,MTb
R527 T569 T594 mark that,inhibits
R528 T570 T594 csubj silencing,inhibits
R529 T571 T570 prep of,silencing
R530 T572 T573 det the,expression
R531 T573 T571 pobj expression,of
R532 T574 T573 prep of,expression
R533 T575 T577 det the,factor
R534 T576 T577 compound transcription,factor
R535 T577 T574 pobj factor,of
R536 T578 T579 amod nuclear,factor
R537 T579 T573 conj factor,expression
R538 T580 T573 prep of,expression
R539 T581 T583 amod activated,cells
R540 T582 T583 compound T,cells
R541 T583 T580 pobj cells,of
R542 T584 T570 nummod 5,silencing
R543 T585 T586 punct (,NFAT5
R544 T586 T584 prep NFAT5,5
R545 T587 T584 punct ),5

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T135 391-398 Positive_regulation denotes induced
T134 391-398 Positive_regulation denotes induced
T133 367-377 Gene_expression denotes expression
T131 344-354 Protein denotes NFAT5 gene
T130 103-112 Negative_regulation denotes silencing
T129 103-112 Negative_regulation denotes silencing
T128 103-112 Negative_regulation denotes silencing
T127 120-130 Gene_expression denotes expression
T122 138-173 Protein denotes transcription factor nuclear factor
T123 177-196 Protein denotes activated T cells 5
T124 198-203 Protein denotes NFAT5
T125 120-130 Gene_expression denotes expression
T126 120-130 Gene_expression denotes expression
R22 T133 T135 themeOf expression,induced
R19 T127 T130 themeOf expression,silencing
R20 T131 T133 themeOf NFAT5 gene,expression
R21 T131 T134 themeOf NFAT5 gene,induced
R466 T122 T125 themeOf transcription factor nuclear factor,expression
R467 T123 T126 themeOf activated T cells 5,expression
R468 T124 T127 themeOf NFAT5,expression
R469 T125 T128 themeOf expression,silencing
R470 T126 T129 themeOf expression,silencing

testone

Id Subject Object Predicate Lexical cue
T24 391-398 Positive_regulation denotes induced
T23 103-112 Negative_regulation denotes silencing
T15 344-349 Protein denotes NFAT5
T14 198-203 Protein denotes NFAT5
T13 159-196 Protein denotes nuclear factor of activated T cells 5
R1 T14 T13 equivalentTo NFAT5,nuclear factor of activated T cells 5

test3

Id Subject Object Predicate Lexical cue
T45 198-203 Protein denotes NFAT5
T44 159-196 Protein denotes nuclear factor of activated T cells 5
T35 344-349 Protein denotes NFAT5
T34 198-203 Protein denotes NFAT5
T33 159-196 Protein denotes nuclear factor of activated T cells 5
T47 391-398 Positive_regulation denotes induced
T46 344-349 Protein denotes NFAT5
R11 T45 T44 equivalentTo NFAT5,nuclear factor of activated T cells 5
R12 T46 T47 themeOf NFAT5,induced