PMC:3320587 / 33769-34073
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25398 | 302-303 | -RRB- | denotes | ) |
| T25397 | 289-302 | NN | denotes | cells∶bacilli |
| T25396 | 284-288 | CD | denotes | 10∶1 |
| T25395 | 283-284 | -LRB- | denotes | ( |
| T25394 | 275-282 | NN | denotes | CDC1551 |
| T25393 | 267-274 | NN | denotes | isolate |
| T25392 | 263-266 | NN | denotes | MTb |
| T25391 | 258-262 | IN | denotes | with |
| T25390 | 246-257 | JJ | denotes | co-infected |
| T25389 | 244-245 | -RRB- | denotes | ) |
| T25388 | 243-244 | NN | denotes | B |
| T25387 | 242-243 | -LRB- | denotes | ( |
| T25386 | 239-241 | CC | denotes | or |
| T25385 | 237-238 | -COMMA- | denotes | , |
| T25384 | 228-237 | JJ | denotes | untreated |
| T25383 | 223-227 | VB | denotes | left |
| T25382 | 221-222 | -RRB- | denotes | ) |
| T25381 | 220-221 | NN | denotes | A |
| T25380 | 219-220 | -LRB- | denotes | ( |
| T25379 | 217-218 | -COLON- | denotes | ; |
| T25378 | 211-217 | CC | denotes | either |
| T25377 | 207-210 | CC | denotes | and |
| T25376 | 183-206 | NN | denotes | HIV-1Lai/Bal-env-N5-Mut |
| T25375 | 180-182 | CC | denotes | or |
| T25374 | 178-179 | -COMMA- | denotes | , |
| T25373 | 170-178 | NN | denotes | I+II-Mut |
| T25372 | 150-169 | NN | denotes | HIV-1Lai/Bal-env-κB |
| T25371 | 148-149 | -COMMA- | denotes | , |
| T25370 | 142-148 | NN | denotes | II-Mut |
| T25369 | 122-141 | NN | denotes | HIV-1Lai/Bal-env-κB |
| T25368 | 120-121 | -COMMA- | denotes | , |
| T25367 | 115-120 | NN | denotes | I-Mut |
| T25366 | 95-114 | NN | denotes | HIV-1Lai/Bal-env-κB |
| T25365 | 87-94 | NN | denotes | mutants |
| T25364 | 83-86 | DT | denotes | the |
| T25363 | 80-82 | CC | denotes | or |
| T25362 | 60-79 | NN | denotes | HIV-1Lai/Bal-env-WT |
| T25361 | 53-59 | NN | denotes | TCID50 |
| T25360 | 48-52 | CD | denotes | 1000 |
| T25359 | 43-47 | IN | denotes | with |
| T25358 | 34-42 | VB | denotes | infected |
| T25357 | 29-33 | VB | denotes | were |
| T25356 | 22-28 | NN | denotes | donors |
| T25355 | 15-21 | JJ | denotes | normal |
| T25354 | 10-14 | CD | denotes | four |
| T25353 | 5-9 | IN | denotes | from |
| T25352 | 0-4 | NN | denotes | PBMC |
| R18489 | T25352 | T25353 | arg1Of | PBMC,from |
| R18490 | T25352 | T25357 | arg1Of | PBMC,were |
| R18491 | T25352 | T25358 | arg2Of | PBMC,infected |
| R18492 | T25356 | T25353 | arg2Of | donors,from |
| R18493 | T25356 | T25354 | arg1Of | donors,four |
| R18494 | T25356 | T25355 | arg1Of | donors,normal |
| R18495 | T25358 | T25357 | arg2Of | infected,were |
| R18496 | T25358 | T25359 | arg1Of | infected,with |
| R18497 | T25358 | T25377 | arg1Of | infected,and |
| R18498 | T25362 | T25360 | arg1Of | HIV-1Lai/Bal-env-WT,1000 |
| R18499 | T25362 | T25361 | arg1Of | HIV-1Lai/Bal-env-WT,TCID50 |
| R18500 | T25362 | T25363 | arg1Of | HIV-1Lai/Bal-env-WT,or |
| R18501 | T25363 | T25368 | arg1Of | or,"," |
| R18502 | T25365 | T25364 | arg1Of | mutants,the |
| R18503 | T25367 | T25363 | arg2Of | I-Mut,or |
| R18504 | T25367 | T25365 | arg1Of | I-Mut,mutants |
| R18505 | T25367 | T25366 | arg1Of | I-Mut,HIV-1Lai/Bal-env-κB |
| R18506 | T25368 | T25371 | arg1Of | ",","," |
| R18507 | T25370 | T25368 | arg2Of | II-Mut,"," |
| R18508 | T25370 | T25369 | arg1Of | II-Mut,HIV-1Lai/Bal-env-κB |
| R18509 | T25371 | T25375 | arg1Of | ",",or |
| R18510 | T25373 | T25371 | arg2Of | I+II-Mut,"," |
| R18511 | T25373 | T25372 | arg1Of | I+II-Mut,HIV-1Lai/Bal-env-κB |
| R18512 | T25375 | T25359 | arg2Of | or,with |
| R18513 | T25375 | T25374 | arg1Of | or,"," |
| R18514 | T25376 | T25375 | arg2Of | HIV-1Lai/Bal-env-N5-Mut,or |
| R18515 | T25381 | T25380 | arg2Of | A,( |
| R18516 | T25381 | T25383 | arg1Of | A,left |
| R18517 | T25381 | T25390 | arg1Of | A,co-infected |
| R18518 | T25382 | T25380 | arg3Of | ),( |
| R18519 | T25383 | T25377 | arg2Of | left,and |
| R18520 | T25383 | T25378 | arg1Of | left,either |
| R18521 | T25383 | T25379 | arg1Of | left,; |
| R18522 | T25383 | T25390 | modOf | left,co-infected |
| R18523 | T25384 | T25386 | arg1Of | untreated,or |
| R18524 | T25386 | T25385 | arg1Of | or,"," |
| R18525 | T25388 | T25383 | arg2Of | B,left |
| R18526 | T25388 | T25384 | arg1Of | B,untreated |
| R18527 | T25388 | T25387 | arg2Of | B,( |
| R18528 | T25389 | T25387 | arg3Of | ),( |
| R18529 | T25390 | T25391 | arg1Of | co-infected,with |
| R18530 | T25394 | T25391 | arg2Of | CDC1551,with |
| R18531 | T25394 | T25392 | arg1Of | CDC1551,MTb |
| R18532 | T25394 | T25393 | arg1Of | CDC1551,isolate |
| R18533 | T25394 | T25395 | arg1Of | CDC1551,( |
| R18534 | T25397 | T25395 | arg2Of | cells∶bacilli,( |
| R18535 | T25397 | T25396 | arg1Of | cells∶bacilli,10∶1 |
| R18536 | T25398 | T25395 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25286 | 73-76 | Protein | denotes | env |
| T25290 | 196-199 | Protein | denotes | env |
| T25289 | 163-166 | Protein | denotes | env |
| T25288 | 135-138 | Protein | denotes | env |
| T25287 | 108-111 | Protein | denotes | env |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25490 | 196-199 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T25489 | 163-166 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T25488 | 135-138 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T25487 | 108-111 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T25486 | 73-76 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25273 | 0-304 | Sentence | denotes | PBMC from four normal donors were infected with 1000 TCID50 HIV-1Lai/Bal-env-WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut and either; (A) left untreated, or (B) co-infected with MTb isolate CDC1551 (10∶1 cells∶bacilli). |
| T199 | 0-304 | Sentence | denotes | PBMC from four normal donors were infected with 1000 TCID50 HIV-1Lai/Bal-env-WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut and either; (A) left untreated, or (B) co-infected with MTb isolate CDC1551 (10∶1 cells∶bacilli). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25308 | 196-199 | Protein | denotes | env |
| T25307 | 163-166 | Protein | denotes | env |
| T25306 | 135-138 | Protein | denotes | env |
| T25305 | 108-111 | Protein | denotes | env |
| T25304 | 73-76 | Protein | denotes | env |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25787 | 196-199 | Protein | denotes | env |
| T25786 | 163-166 | Protein | denotes | env |
| T25785 | 135-138 | Protein | denotes | env |
| T25784 | 108-111 | Protein | denotes | env |
| T25783 | 73-76 | Protein | denotes | env |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25514 | 196-199 | Protein | denotes | env |
| T25513 | 163-166 | Protein | denotes | env |
| T25512 | 135-138 | Protein | denotes | env |
| T25511 | 108-111 | Protein | denotes | env |
| T25510 | 73-76 | Protein | denotes | env |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25504 | 196-199 | Protein | denotes | env |
| T25503 | 163-166 | Protein | denotes | env |
| T25502 | 135-138 | Protein | denotes | env |
| T25501 | 108-111 | Protein | denotes | env |
| T25500 | 73-76 | Protein | denotes | env |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25809 | 263-266 | Protein | denotes | MTb |
| T25801 | 145-148 | Protein | denotes | Mut |
| T25794 | 0-28 | Entity | denotes | PBMC from four normal donors |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25676 | 244-245 | -RRB- | denotes | ) |
| T25675 | 243-244 | NNP | denotes | B |
| T25674 | 242-243 | -LRB- | denotes | ( |
| T25673 | 239-241 | CC | denotes | or |
| T25672 | 237-238 | , | denotes | , |
| T25671 | 228-237 | JJ | denotes | untreated |
| T25670 | 223-227 | VBD | denotes | left |
| T25669 | 221-222 | -RRB- | denotes | ) |
| T25668 | 220-221 | NNP | denotes | A |
| T25667 | 219-220 | -LRB- | denotes | ( |
| T25666 | 217-218 | : | denotes | ; |
| T25665 | 211-217 | RB | denotes | either |
| T25664 | 207-210 | CC | denotes | and |
| T25663 | 192-206 | NN | denotes | Bal-env-N5-Mut |
| T25662 | 191-192 | NN | denotes | / |
| T25661 | 183-191 | JJ | denotes | HIV-1Lai |
| T25660 | 180-182 | CC | denotes | or |
| T25659 | 178-179 | , | denotes | , |
| T25658 | 175-178 | NNP | denotes | Mut |
| T25657 | 174-175 | : | denotes | - |
| T25656 | 170-174 | NNP | denotes | I+II |
| T25655 | 159-169 | NNP | denotes | Bal-env-κB |
| T25654 | 158-159 | NNP | denotes | / |
| T25653 | 150-158 | NNP | denotes | HIV-1Lai |
| T25652 | 148-149 | , | denotes | , |
| T25651 | 142-148 | NNP | denotes | II-Mut |
| T25650 | 131-141 | NNP | denotes | Bal-env-κB |
| T25649 | 130-131 | NNP | denotes | / |
| T25648 | 122-130 | NNP | denotes | HIV-1Lai |
| T25647 | 120-121 | , | denotes | , |
| T25646 | 115-120 | NNP | denotes | I-Mut |
| T25645 | 104-114 | NNP | denotes | Bal-env-κB |
| T25644 | 103-104 | NN | denotes | / |
| T25643 | 95-103 | JJ | denotes | HIV-1Lai |
| T25642 | 87-94 | NNS | denotes | mutants |
| T25641 | 83-86 | DT | denotes | the |
| T25640 | 80-82 | CC | denotes | or |
| T25639 | 69-79 | NN | denotes | Bal-env-WT |
| T25638 | 68-69 | NN | denotes | / |
| T25637 | 60-68 | JJ | denotes | HIV-1Lai |
| T25636 | 53-59 | CD | denotes | TCID50 |
| T25635 | 48-52 | CD | denotes | 1000 |
| T25634 | 43-47 | IN | denotes | with |
| T25633 | 34-42 | VBN | denotes | infected |
| T25632 | 29-33 | VBD | denotes | were |
| T25631 | 22-28 | NNS | denotes | donors |
| T25630 | 15-21 | JJ | denotes | normal |
| T25629 | 10-14 | CD | denotes | four |
| T25628 | 5-9 | IN | denotes | from |
| T25627 | 0-4 | NNP | denotes | PBMC |
| T25690 | 303-304 | . | denotes | . |
| T25689 | 302-303 | -RRB- | denotes | ) |
| T25688 | 295-302 | NNS | denotes | bacilli |
| T25687 | 294-295 | VBP | denotes | ∶ |
| T25686 | 289-294 | NNS | denotes | cells |
| T25685 | 287-288 | CD | denotes | 1 |
| T25684 | 286-287 | NN | denotes | ∶ |
| T25683 | 284-286 | CD | denotes | 10 |
| T25682 | 283-284 | -LRB- | denotes | ( |
| T25681 | 275-282 | NNP | denotes | CDC1551 |
| T25680 | 267-274 | VB | denotes | isolate |
| T25679 | 263-266 | NNP | denotes | MTb |
| T25678 | 258-262 | IN | denotes | with |
| T25677 | 246-257 | VBN | denotes | co-infected |
| R18682 | T25627 | T25633 | nsubjpass | PBMC,infected |
| R18683 | T25628 | T25627 | prep | from,PBMC |
| R18684 | T25629 | T25631 | nummod | four,donors |
| R18685 | T25630 | T25631 | amod | normal,donors |
| R18686 | T25631 | T25628 | pobj | donors,from |
| R18687 | T25632 | T25633 | auxpass | were,infected |
| R18688 | T25633 | T25633 | ROOT | infected,infected |
| R18689 | T25634 | T25633 | prep | with,infected |
| R18690 | T25635 | T25639 | nummod | 1000,Bal-env-WT |
| R18691 | T25636 | T25639 | nummod | TCID50,Bal-env-WT |
| R18692 | T25637 | T25639 | amod | HIV-1Lai,Bal-env-WT |
| R18693 | T25638 | T25639 | compound | /,Bal-env-WT |
| R18694 | T25639 | T25634 | pobj | Bal-env-WT,with |
| R18695 | T25640 | T25639 | cc | or,Bal-env-WT |
| R18696 | T25641 | T25642 | det | the,mutants |
| R18697 | T25642 | T25670 | nsubj | mutants,left |
| R18698 | T25643 | T25644 | compound | HIV-1Lai,/ |
| R18699 | T25644 | T25646 | compound | /,I-Mut |
| R18700 | T25645 | T25646 | compound | Bal-env-κB,I-Mut |
| R18701 | T25646 | T25642 | appos | I-Mut,mutants |
| R18702 | T25647 | T25646 | punct | ",",I-Mut |
| R18703 | T25648 | T25651 | compound | HIV-1Lai,II-Mut |
| R18704 | T25649 | T25651 | compound | /,II-Mut |
| R18705 | T25650 | T25651 | compound | Bal-env-κB,II-Mut |
| R18706 | T25651 | T25646 | conj | II-Mut,I-Mut |
| R18707 | T25652 | T25651 | punct | ",",II-Mut |
| R18708 | T25653 | T25656 | compound | HIV-1Lai,I+II |
| R18709 | T25654 | T25656 | compound | /,I+II |
| R18710 | T25655 | T25656 | compound | Bal-env-κB,I+II |
| R18711 | T25656 | T25658 | compound | I+II,Mut |
| R18712 | T25657 | T25658 | punct | -,Mut |
| R18713 | T25658 | T25651 | conj | Mut,II-Mut |
| R18714 | T25659 | T25658 | punct | ",",Mut |
| R18715 | T25660 | T25658 | cc | or,Mut |
| R18716 | T25661 | T25663 | compound | HIV-1Lai,Bal-env-N5-Mut |
| R18717 | T25662 | T25663 | compound | /,Bal-env-N5-Mut |
| R18718 | T25663 | T25658 | conj | Bal-env-N5-Mut,Mut |
| R18719 | T25664 | T25663 | cc | and,Bal-env-N5-Mut |
| R18720 | T25665 | T25663 | conj | either,Bal-env-N5-Mut |
| R18721 | T25666 | T25658 | punct | ;,Mut |
| R18722 | T25667 | T25668 | punct | (,A |
| R18723 | T25668 | T25658 | conj | A,Mut |
| R18724 | T25669 | T25658 | punct | ),Mut |
| R18725 | T25670 | T25633 | advcl | left,infected |
| R18726 | T25671 | T25670 | oprd | untreated,left |
| R18727 | T25672 | T25670 | punct | ",",left |
| R18728 | T25673 | T25670 | cc | or,left |
| R18729 | T25674 | T25677 | punct | (,co-infected |
| R18730 | T25675 | T25677 | dep | B,co-infected |
| R18731 | T25676 | T25677 | punct | ),co-infected |
| R18732 | T25677 | T25670 | conj | co-infected,left |
| R18733 | T25678 | T25677 | prep | with,co-infected |
| R18734 | T25679 | T25678 | pobj | MTb,with |
| R18735 | T25680 | T25670 | conj | isolate,left |
| R18736 | T25681 | T25680 | dobj | CDC1551,isolate |
| R18737 | T25682 | T25681 | punct | (,CDC1551 |
| R18738 | T25683 | T25684 | nummod | 10,∶ |
| R18739 | T25684 | T25680 | npadvmod | ∶,isolate |
| R18740 | T25685 | T25686 | nummod | 1,cells |
| R18741 | T25686 | T25684 | appos | cells,∶ |
| R18742 | T25687 | T25688 | compound | ∶,bacilli |
| R18743 | T25688 | T25686 | appos | bacilli,cells |
| R18744 | T25689 | T25686 | punct | ),cells |
| R18745 | T25690 | T25670 | punct | .,left |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25551 | 203-206 | Protein | denotes | Mut |
| T25550 | 200-202 | Protein | denotes | N5 |
| T25549 | 196-199 | Protein | denotes | env |
| T25548 | 175-178 | Protein | denotes | Mut |
| T25547 | 167-174 | Protein | denotes | κB I+II |
| T25546 | 163-166 | Protein | denotes | env |
| T25545 | 145-148 | Protein | denotes | Mut |
| T25544 | 139-144 | Protein | denotes | κB II |
| T25543 | 135-138 | Protein | denotes | env |
| T25542 | 117-120 | Protein | denotes | Mut |
| T25541 | 112-116 | Protein | denotes | κB I |
| T25540 | 108-111 | Protein | denotes | env |
| T25539 | 77-79 | Protein | denotes | WT |
| T25538 | 73-76 | Protein | denotes | env |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25250 | 196-199 | Protein | denotes | env |
| T25249 | 163-166 | Protein | denotes | env |
| T25248 | 135-138 | Protein | denotes | env |
| T25247 | 108-111 | Protein | denotes | env |
| T25246 | 73-76 | Protein | denotes | env |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25268 | 196-199 | Protein | denotes | env |
| T25267 | 163-166 | Protein | denotes | env |
| T25266 | 135-138 | Protein | denotes | env |
| T25265 | 108-111 | Protein | denotes | env |
| T25264 | 73-76 | Protein | denotes | env |
| T25259 | 196-199 | Protein | denotes | env |
| T25258 | 163-166 | Protein | denotes | env |
| T25257 | 135-138 | Protein | denotes | env |
| T25256 | 108-111 | Protein | denotes | env |
| T25255 | 73-76 | Protein | denotes | env |