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PMC:3320587 / 3271-3623 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-17263638-98010769 55-56 17263638 denotes 7
22496647-21852682-98010770 76-78 21852682 denotes 10
22496647-1345800-98010771 275-277 1345800 denotes 11
22496647-20299961-98010772 280-282 20299961 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1281 260-262 NN denotes TB
T1280 252-259 JJ denotes primary
T1279 249-251 TO denotes to
T1278 234-248 NN denotes susceptibility
T1277 224-233 VB denotes increased
T1276 221-223 IN denotes as
T1275 216-220 RB denotes well
T1274 213-215 RB denotes as
T1273 211-212 -COMMA- denotes ,
T1272 199-211 NN denotes reactivation
T1271 195-198 NN denotes MTb
T1270 188-194 JJ denotes latent
T1269 185-187 IN denotes of
T1268 179-184 NN denotes cause
T1267 173-178 JJ denotes major
T1266 171-172 DT denotes a
T1265 168-170 VB denotes is
T1264 161-167 PRP denotes itself
T1263 151-160 NN denotes infection
T1262 145-150 NN denotes HIV-1
T1261 140-144 IN denotes with
T1260 129-139 VB denotes associated
T1259 118-128 NN denotes compromise
T1258 111-117 JJ denotes immune
T1257 99-110 JJ denotes progressive
T1256 95-98 DT denotes the
T1255 93-94 -COMMA- denotes ,
T1254 82-93 RB denotes Furthermore
T1253 79-80 -RRB- denotes )
T1252 78-79 -RRB- denotes ]
T1251 76-78 CD denotes 10
T1250 75-76 -LRB- denotes [
T1249 74-75 NN denotes –
T1248 73-74 -RRB- denotes ]
T1247 72-73 CD denotes 8
T1246 71-72 -LRB- denotes [
T1245 68-70 IN denotes in
T1244 59-67 VB denotes reviewed
T1243 57-58 -COMMA- denotes ,
T1242 56-57 -RRB- denotes ]
T1241 55-56 CD denotes 7
T1240 54-55 -LRB- denotes [
T1239 53-54 -LRB- denotes (
T1238 48-52 NN denotes AIDS
T1237 45-47 TO denotes to
T1236 33-44 NN denotes progression
T1235 29-32 CC denotes and
T1234 24-28 NN denotes loss
T1233 19-23 NN denotes cell
T1232 17-18 NN denotes T
T1231 13-16 NN denotes CD4
T1230 3-12 VB denotes expedited
T1229 1-2 -COMMA- denotes ,
T1305 348-350 IN denotes by
T1304 338-347 VB denotes triggered
T1303 332-337 NN denotes cells
T1302 322-331 JJ denotes monocytic
T1301 319-321 IN denotes on
T1300 315-318 NN denotes PRR
T1299 307-314 JJ denotes primary
T1298 303-306 DT denotes The
T1297 300-301 -RRB- denotes )
T1296 299-300 -RRB- denotes ]
T1295 298-299 CD denotes 8
T1294 297-298 -LRB- denotes [
T1293 294-296 IN denotes in
T1292 285-293 VB denotes reviewed
T1291 283-284 -COMMA- denotes ,
T1290 282-283 -RRB- denotes ]
T1289 280-282 CD denotes 15
T1288 279-280 -LRB- denotes [
T1287 278-279 CD denotes –
T1286 277-278 -RRB- denotes ]
T1285 275-277 CD denotes 11
T1284 274-275 -LRB- denotes [
T1283 273-274 -LRB- denotes (
T1282 263-272 NN denotes infection
R798 T1230 T1229 arg1Of expedited,","
R799 T1230 T1250 arg1Of expedited,[
R800 T1230 T1253 arg1Of expedited,)
R801 T1234 T1231 arg1Of loss,CD4
R802 T1234 T1232 arg1Of loss,T
R803 T1234 T1233 arg1Of loss,cell
R804 T1234 T1235 arg1Of loss,and
R805 T1235 T1230 arg2Of and,expedited
R806 T1235 T1243 arg1Of and,","
R807 T1235 T1244 arg2Of and,reviewed
R808 T1236 T1235 arg2Of progression,and
R809 T1236 T1237 arg1Of progression,to
R810 T1238 T1237 arg2Of AIDS,to
R811 T1238 T1239 arg1Of AIDS,(
R812 T1241 T1239 arg2Of 7,(
R813 T1241 T1240 arg1Of 7,[
R814 T1242 T1239 arg3Of ],(
R815 T1244 T1245 arg1Of reviewed,in
R816 T1247 T1246 arg2Of 8,[
R817 T1248 T1246 arg3Of ],[
R818 T1249 T1245 arg2Of –,in
R819 T1249 T1246 arg1Of –,[
R820 T1251 T1250 arg2Of 10,[
R821 T1252 T1250 arg3Of ],[
R822 T1259 T1256 arg1Of compromise,the
R823 T1259 T1257 arg1Of compromise,progressive
R824 T1259 T1258 arg1Of compromise,immune
R825 T1259 T1260 arg2Of compromise,associated
R826 T1259 T1265 arg1Of compromise,is
R827 T1260 T1261 arg1Of associated,with
R828 T1263 T1261 arg2Of infection,with
R829 T1263 T1262 arg1Of infection,HIV-1
R830 T1263 T1264 arg1Of infection,itself
R831 T1265 T1254 arg1Of is,Furthermore
R832 T1265 T1255 arg1Of is,","
R833 T1268 T1265 arg2Of cause,is
R834 T1268 T1266 arg1Of cause,a
R835 T1268 T1267 arg1Of cause,major
R836 T1268 T1269 arg1Of cause,of
R837 T1272 T1270 arg1Of reactivation,latent
R838 T1272 T1271 arg1Of reactivation,MTb
R839 T1272 T1276 arg1Of reactivation,as
R840 T1276 T1269 arg2Of as,of
R841 T1276 T1273 arg1Of as,","
R842 T1276 T1274 arg1Of as,as
R843 T1276 T1275 arg1Of as,well
R844 T1278 T1276 arg2Of susceptibility,as
R845 T1278 T1277 arg2Of susceptibility,increased
R846 T1278 T1279 arg1Of susceptibility,to
R847 T1282 T1279 arg2Of infection,to
R848 T1282 T1280 arg1Of infection,primary
R849 T1282 T1281 arg1Of infection,TB
R850 T1282 T1283 arg1Of infection,(
R851 T1285 T1284 arg2Of 11,[
R852 T1286 T1284 arg3Of ],[
R853 T1287 T1283 arg2Of –,(
R854 T1287 T1284 arg1Of –,[
R855 T1287 T1288 arg1Of –,[
R856 T1287 T1291 arg1Of –,","
R857 T1287 T1292 arg2Of –,reviewed
R858 T1289 T1288 arg2Of 15,[
R859 T1290 T1288 arg3Of ],[
R860 T1292 T1293 arg1Of reviewed,in
R861 T1295 T1293 arg2Of 8,in
R862 T1295 T1294 arg2Of 8,[
R863 T1296 T1294 arg3Of ],[
R864 T1297 T1283 arg3Of ),(
R865 T1300 T1298 arg1Of PRR,The
R866 T1300 T1299 arg1Of PRR,primary
R867 T1300 T1301 arg1Of PRR,on
R869 T1303 T1301 arg2Of cells,on
R870 T1303 T1302 arg1Of cells,monocytic
R871 T1303 T1304 arg2Of cells,triggered

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T980 13-16 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1773 13-16 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-CC

Id Subject Object Predicate Lexical cue
T1050 332-337 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T929 82-302 Sentence denotes Furthermore, the progressive immune compromise associated with HIV-1 infection itself is a major cause of latent MTb reactivation, as well as increased susceptibility to primary TB infection ([11]–[15], reviewed in [8]).
T21 82-302 Sentence denotes Furthermore, the progressive immune compromise associated with HIV-1 infection itself is a major cause of latent MTb reactivation, as well as increased susceptibility to primary TB infection ([11]–[15], reviewed in [8]).

simple1

Id Subject Object Predicate Lexical cue
T1074 13-16 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2668 13-16 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1847 13-16 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T1796 13-16 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2781 185-212 Positive_regulation denotes of latent MTb reactivation,
T2761 195-198 Protein denotes MTb
T2758 13-16 Protein denotes CD4
T2718 13-23 Entity denotes CD4 T cell
T2697 322-337 Entity denotes monocytic cells
R2154 T2761 T2781 themeOf MTb,"of latent MTb reactivation,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2142 348-350 IN denotes by
T2141 338-347 VBN denotes triggered
T2140 332-337 NNS denotes cells
T2139 322-331 JJ denotes monocytic
T2138 319-321 IN denotes on
T2137 315-318 NNP denotes PRR
T2136 307-314 JJ denotes primary
T2135 303-306 DT denotes The
T2134 301-302 . denotes .
T2133 300-301 -RRB- denotes )
T2132 299-300 NNP denotes ]
T2131 298-299 CD denotes 8
T2130 297-298 NN denotes [
T2129 294-296 IN denotes in
T2128 285-293 VBN denotes reviewed
T2127 283-284 , denotes ,
T2126 282-283 NNP denotes ]
T2125 280-282 CD denotes 15
T2124 279-280 NNP denotes [
T2123 277-278 NNP denotes ]
T2122 275-277 CD denotes 11
T2121 274-275 NNP denotes [
T2120 273-274 -LRB- denotes (
T2119 263-272 NN denotes infection
T2118 260-262 NN denotes TB
T2117 252-259 JJ denotes primary
T2116 249-251 TO denotes to
T2115 234-248 NN denotes susceptibility
T2114 224-233 VBN denotes increased
T2113 221-223 IN denotes as
T2112 216-220 RB denotes well
T2111 213-215 RB denotes as
T2110 211-212 , denotes ,
T2109 199-211 NN denotes reactivation
T2108 195-198 NNP denotes MTb
T2107 188-194 NN denotes latent
T2106 185-187 IN denotes of
T2105 179-184 NN denotes cause
T2104 173-178 JJ denotes major
T2103 171-172 DT denotes a
T2102 168-170 VBZ denotes is
T2101 161-167 PRP denotes itself
T2100 151-160 NN denotes infection
T2099 145-150 JJ denotes HIV-1
T2098 140-144 IN denotes with
T2097 129-139 VBN denotes associated
T2096 118-128 NN denotes compromise
T2095 111-117 JJ denotes immune
T2094 99-110 JJ denotes progressive
T2093 95-98 DT denotes the
T2092 93-94 , denotes ,
T2091 82-93 RB denotes Furthermore
T2090 80-81 . denotes .
T2089 79-80 -RRB- denotes )
T2088 78-79 NNP denotes ]
T2087 76-78 CD denotes 10
T2086 75-76 NNP denotes [
T2085 73-74 NNP denotes ]
T2084 72-73 CD denotes 8
T2083 71-72 NN denotes [
T2082 68-70 IN denotes in
T2081 59-67 VBN denotes reviewed
T2080 57-58 , denotes ,
T2079 56-57 NNP denotes ]
T2078 55-56 CD denotes 7
T2077 54-55 NNP denotes [
T2076 53-54 -LRB- denotes (
T2075 48-52 NNP denotes AIDS
T2074 45-47 TO denotes to
T2073 33-44 NN denotes progression
T2072 29-32 CC denotes and
T2071 24-28 NN denotes loss
T2070 19-23 NN denotes cell
T2069 17-18 NNP denotes T
T2068 13-16 NNP denotes CD4
T2067 3-12 VBN denotes expedited
T2066 1-2 , denotes ,
R1525 T2066 T2081 punct ",",reviewed
R1526 T2067 T2071 amod expedited,loss
R1528 T2068 T2069 compound CD4,T
R1529 T2069 T2071 compound T,loss
R1530 T2070 T2071 compound cell,loss
R1532 T2071 T2081 nsubj loss,reviewed
R1533 T2072 T2071 cc and,loss
R1535 T2073 T2071 conj progression,loss
R1536 T2074 T2071 prep to,loss
R1537 T2075 T2074 pobj AIDS,to
R1538 T2076 T2075 punct (,AIDS
R1540 T2077 T2075 appos [,AIDS
R1541 T2078 T2079 nummod 7,]
R1543 T2079 T2075 conj ],AIDS
R1544 T2080 T2071 punct ",",loss
R1547 T2082 T2081 prep in,reviewed
R1548 T2083 T2085 amod [,]
R1549 T2084 T2085 nummod 8,]
R1551 T2085 T2082 pobj ],in
R1552 T2086 T2085 appos [,]
R1553 T2087 T2088 nummod 10,]
R1555 T2088 T2085 appos ],]
R1560 T2091 T2102 advmod Furthermore,is
R1566 T2092 T2102 punct ",",is
R1567 T2093 T2096 det the,compromise
R1568 T2094 T2096 amod progressive,compromise
R1569 T2095 T2096 amod immune,compromise
R1570 T2096 T2102 nsubj compromise,is
R1572 T2097 T2096 acl associated,compromise
R1573 T2098 T2097 prep with,associated
R1575 T2099 T2100 compound HIV-1,infection
R1576 T2100 T2098 pobj infection,with
R1578 T2101 T2100 appos itself,infection
R1579 T2102 T2102 ROOT is,is
R1580 T2103 T2105 det a,cause
R1582 T2104 T2105 amod major,cause
R1583 T2105 T2102 attr cause,is
R1584 T2106 T2105 prep of,cause
R1586 T2107 T2109 amod latent,reactivation
R1587 T2108 T2109 compound MTb,reactivation
R1588 T2109 T2106 pobj reactivation,of
R1590 T2110 T2105 punct ",",cause
R1591 T2111 T2113 advmod as,as
R1592 T2112 T2113 advmod well,as
R1593 T2113 T2105 cc as,cause
R1595 T2114 T2115 amod increased,susceptibility
R1596 T2115 T2105 conj susceptibility,cause
R1597 T2116 T2115 prep to,susceptibility
R1599 T2117 T2119 amod primary,infection
R1600 T2118 T2119 compound TB,infection
R1602 T2119 T2116 pobj infection,to
R1603 T2120 T2116 punct (,to
R1604 T2121 T2128 nsubj [,reviewed
R1606 T2122 T2123 compound 11,]
R1607 T2123 T2121 dobj ],[
R1608 T2124 T2126 nmod [,]
R1609 T2125 T2126 nummod 15,]
R1611 T2126 T2121 conj ],[
R1612 T2127 T2126 punct ",",]
R1614 T2128 T2102 advcl reviewed,is
R1615 T2129 T2128 prep in,reviewed
R1616 T2130 T2132 compound [,]
R1617 T2131 T2132 nummod 8,]
R1618 T2132 T2129 pobj ],in
R1619 T2133 T2128 punct ),reviewed
R1620 T2134 T2102 punct .,is
R1622 T2135 T2137 det The,PRR
R1623 T2136 T2137 amod primary,PRR
R1625 T2138 T2137 prep on,PRR
R1627 T2139 T2140 amod monocytic,cells
R1628 T2140 T2138 pobj cells,on
R1630 T2141 T2140 acl triggered,cells
R1631 T2142 T2141 agent by,triggered
R1558 T2089 T2085 punct ),]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1882 13-18 Protein denotes CD4 T

testone

Id Subject Object Predicate Lexical cue
T855 13-16 Protein denotes CD4

test3

Id Subject Object Predicate Lexical cue
T900 13-16 Protein denotes CD4
T881 13-16 Protein denotes CD4