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PMC:3320587 / 3144-3404 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-1906500-98010767 6-7 1906500 denotes 4
22496647-11854362-98010768 10-11 11854362 denotes 6
22496647-17263638-98010769 182-183 17263638 denotes 7
22496647-21852682-98010770 203-205 21852682 denotes 10

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1259 245-255 NN denotes compromise
T1258 238-244 JJ denotes immune
T1257 226-237 JJ denotes progressive
T1256 222-225 DT denotes the
T1255 220-221 -COMMA- denotes ,
T1254 209-220 RB denotes Furthermore
T1253 206-207 -RRB- denotes )
T1252 205-206 -RRB- denotes ]
T1251 203-205 CD denotes 10
T1250 202-203 -LRB- denotes [
T1249 201-202 NN denotes –
T1248 200-201 -RRB- denotes ]
T1247 199-200 CD denotes 8
T1246 198-199 -LRB- denotes [
T1245 195-197 IN denotes in
T1244 186-194 VB denotes reviewed
T1243 184-185 -COMMA- denotes ,
T1242 183-184 -RRB- denotes ]
T1241 182-183 CD denotes 7
T1240 181-182 -LRB- denotes [
T1239 180-181 -LRB- denotes (
T1238 175-179 NN denotes AIDS
T1237 172-174 TO denotes to
T1236 160-171 NN denotes progression
T1235 156-159 CC denotes and
T1234 151-155 NN denotes loss
T1233 146-150 NN denotes cell
T1232 144-145 NN denotes T
T1231 140-143 NN denotes CD4
T1230 130-139 VB denotes expedited
T1229 128-129 -COMMA- denotes ,
T1228 124-128 NN denotes turn
T1227 121-123 IN denotes in
T1226 119-120 -COMMA- denotes ,
T1225 116-119 CC denotes and
T1224 110-115 NN denotes loads
T1223 104-109 JJ denotes viral
T1222 97-103 JJ denotes higher
T1221 94-96 TO denotes to
T1220 88-93 VB denotes leads
T1219 77-87 RB denotes ultimately
T1218 68-76 NN denotes pathways
T1217 56-67 JJ denotes MTb-induced
T1216 50-55 DT denotes these
T1215 46-49 IN denotes via
T1214 34-45 NN denotes replication
T1213 28-33 NN denotes HIV-1
T1212 25-27 IN denotes of
T1211 14-24 NN denotes Activation
T1210 11-12 -RRB- denotes ]
T1209 10-11 CD denotes 6
T1208 9-10 -LRB- denotes [
T1207 8-9 NN denotes –
T1206 7-8 -RRB- denotes ]
T1205 6-7 CD denotes 4
T1204 5-6 -LRB- denotes [
T1203 1-4 NN denotes LTR
R770 T1205 T1204 arg2Of 4,[
R771 T1206 T1204 arg3Of ],[
R775 T1207 T1203 arg1Of –,LTR
R776 T1207 T1204 arg1Of –,[
R777 T1209 T1208 arg2Of 6,[
R778 T1210 T1208 arg3Of ],[
R779 T1211 T1212 arg1Of Activation,of
R780 T1211 T1215 arg1Of Activation,via
R781 T1211 T1220 arg1Of Activation,leads
R782 T1211 T1230 arg1Of Activation,expedited
R783 T1214 T1212 arg2Of replication,of
R784 T1214 T1213 arg1Of replication,HIV-1
R785 T1218 T1215 arg2Of pathways,via
R786 T1218 T1216 arg1Of pathways,these
R787 T1218 T1217 arg1Of pathways,MTb-induced
R788 T1220 T1221 arg1Of leads,to
R789 T1220 T1226 arg1Of leads,","
R790 T1221 T1225 arg1Of to,and
R791 T1224 T1221 arg2Of loads,to
R792 T1224 T1222 arg1Of loads,higher
R793 T1224 T1223 arg1Of loads,viral
R794 T1226 T1219 arg1Of ",",ultimately
R795 T1228 T1227 arg2Of turn,in
R796 T1230 T1226 arg2Of expedited,","
R797 T1230 T1227 arg1Of expedited,in
R798 T1230 T1229 arg1Of expedited,","
R799 T1230 T1250 arg1Of expedited,[
R800 T1230 T1253 arg1Of expedited,)
R801 T1234 T1231 arg1Of loss,CD4
R802 T1234 T1232 arg1Of loss,T
R803 T1234 T1233 arg1Of loss,cell
R804 T1234 T1235 arg1Of loss,and
R805 T1235 T1230 arg2Of and,expedited
R806 T1235 T1243 arg1Of and,","
R807 T1235 T1244 arg2Of and,reviewed
R808 T1236 T1235 arg2Of progression,and
R809 T1236 T1237 arg1Of progression,to
R810 T1238 T1237 arg2Of AIDS,to
R811 T1238 T1239 arg1Of AIDS,(
R812 T1241 T1239 arg2Of 7,(
R813 T1241 T1240 arg1Of 7,[
R814 T1242 T1239 arg3Of ],(
R815 T1244 T1245 arg1Of reviewed,in
R816 T1247 T1246 arg2Of 8,[
R817 T1248 T1246 arg3Of ],[
R818 T1249 T1245 arg2Of –,in
R819 T1249 T1246 arg1Of –,[
R820 T1251 T1250 arg2Of 10,[
R821 T1252 T1250 arg3Of ],[
R822 T1259 T1256 arg1Of compromise,the
R823 T1259 T1257 arg1Of compromise,progressive
R824 T1259 T1258 arg1Of compromise,immune

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T980 140-143 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1773 140-143 http://www.uniprot.org/uniprot/P01730 denotes CD4

sentences

Id Subject Object Predicate Lexical cue
T928 14-208 Sentence denotes Activation of HIV-1 replication via these MTb-induced pathways ultimately leads to higher viral loads and, in turn, expedited CD4 T cell loss and progression to AIDS ([7], reviewed in [8]–[10]).
T20 14-208 Sentence denotes Activation of HIV-1 replication via these MTb-induced pathways ultimately leads to higher viral loads and, in turn, expedited CD4 T cell loss and progression to AIDS ([7], reviewed in [8]–[10]).

simple1

Id Subject Object Predicate Lexical cue
T1074 140-143 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2668 140-143 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1847 140-143 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T1796 140-143 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2758 140-143 Protein denotes CD4
T2718 140-150 Entity denotes CD4 T cell
T2698 56-67 Protein denotes MTb-induced

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2096 245-255 NN denotes compromise
T2095 238-244 JJ denotes immune
T2094 226-237 JJ denotes progressive
T2093 222-225 DT denotes the
T2092 220-221 , denotes ,
T2091 209-220 RB denotes Furthermore
T2090 207-208 . denotes .
T2089 206-207 -RRB- denotes )
T2088 205-206 NNP denotes ]
T2087 203-205 CD denotes 10
T2086 202-203 NNP denotes [
T2085 200-201 NNP denotes ]
T2084 199-200 CD denotes 8
T2083 198-199 NN denotes [
T2082 195-197 IN denotes in
T2081 186-194 VBN denotes reviewed
T2080 184-185 , denotes ,
T2079 183-184 NNP denotes ]
T2078 182-183 CD denotes 7
T2077 181-182 NNP denotes [
T2076 180-181 -LRB- denotes (
T2075 175-179 NNP denotes AIDS
T2074 172-174 TO denotes to
T2073 160-171 NN denotes progression
T2072 156-159 CC denotes and
T2071 151-155 NN denotes loss
T2070 146-150 NN denotes cell
T2069 144-145 NNP denotes T
T2068 140-143 NNP denotes CD4
T2067 130-139 VBN denotes expedited
T2066 128-129 , denotes ,
T2065 124-128 NN denotes turn
T2064 121-123 IN denotes in
T2063 119-120 , denotes ,
T2062 116-119 CC denotes and
T2061 110-115 NNS denotes loads
T2060 104-109 JJ denotes viral
T2059 97-103 JJR denotes higher
T2058 94-96 TO denotes to
T2057 88-93 VBZ denotes leads
T2056 77-87 RB denotes ultimately
T2055 68-76 NNS denotes pathways
T2054 56-67 JJ denotes MTb-induced
T2053 50-55 DT denotes these
T2052 46-49 IN denotes via
T2051 34-45 NN denotes replication
T2050 28-33 NNP denotes HIV-1
T2049 25-27 IN denotes of
T2048 14-24 NNP denotes Activation
T2047 12-13 . denotes .
T2046 11-12 NNP denotes ]
T2045 10-11 CD denotes 6
T2044 9-10 NN denotes [
T2043 7-8 NNP denotes ]
T2042 6-7 CD denotes 4
T2041 5-6 NNP denotes [
T2040 1-4 NNP denotes LTR
R1491 T2040 T2041 compound LTR,[
R1493 T2041 T2046 compound [,]
R1494 T2042 T2043 nummod 4,]
R1495 T2043 T2044 nmod ],[
R1497 T2044 T2046 nmod [,]
R1498 T2045 T2044 nummod 6,[
R1502 T2048 T2057 nsubj Activation,leads
R1503 T2049 T2048 prep of,Activation
R1505 T2050 T2049 pobj HIV-1,of
R1506 T2051 T2048 conj replication,Activation
R1507 T2052 T2048 prep via,Activation
R1509 T2053 T2055 det these,pathways
R1511 T2054 T2055 amod MTb-induced,pathways
R1512 T2055 T2052 pobj pathways,via
R1513 T2056 T2057 advmod ultimately,leads
R1514 T2057 T2057 ROOT leads,leads
R1516 T2058 T2057 prep to,leads
R1517 T2059 T2061 amod higher,loads
R1518 T2060 T2061 amod viral,loads
R1519 T2061 T2058 pobj loads,to
R1520 T2062 T2061 cc and,loads
R1521 T2063 T2081 punct ",",reviewed
R1523 T2064 T2081 prep in,reviewed
R1524 T2065 T2064 pobj turn,in
R1525 T2066 T2081 punct ",",reviewed
R1526 T2067 T2071 amod expedited,loss
R1528 T2068 T2069 compound CD4,T
R1529 T2069 T2071 compound T,loss
R1530 T2070 T2071 compound cell,loss
R1532 T2071 T2081 nsubj loss,reviewed
R1533 T2072 T2071 cc and,loss
R1535 T2073 T2071 conj progression,loss
R1536 T2074 T2071 prep to,loss
R1537 T2075 T2074 pobj AIDS,to
R1538 T2076 T2075 punct (,AIDS
R1540 T2077 T2075 appos [,AIDS
R1541 T2078 T2079 nummod 7,]
R1543 T2079 T2075 conj ],AIDS
R1544 T2080 T2071 punct ",",loss
R1545 T2081 T2057 advcl reviewed,leads
R1547 T2082 T2081 prep in,reviewed
R1548 T2083 T2085 amod [,]
R1549 T2084 T2085 nummod 8,]
R1551 T2085 T2082 pobj ],in
R1552 T2086 T2085 appos [,]
R1553 T2087 T2088 nummod 10,]
R1555 T2088 T2085 appos ],]
R1559 T2090 T2057 punct .,leads
R1567 T2093 T2096 det the,compromise
R1568 T2094 T2096 amod progressive,compromise
R1569 T2095 T2096 amod immune,compromise
R1558 T2089 T2085 punct ),]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1882 140-145 Protein denotes CD4 T

testone

Id Subject Object Predicate Lexical cue
T855 140-143 Protein denotes CD4

test3

Id Subject Object Predicate Lexical cue
T900 140-143 Protein denotes CD4
T881 140-143 Protein denotes CD4