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PMC:3320587 / 29640-29871 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24169 223-230 NN denotes binding
T24168 215-222 NN denotes p50/p65
T24167 203-214 JJ denotes recombinant
T24166 193-202 VB denotes abrogates
T24165 181-192 RB denotes effectively
T24164 175-180 NN denotes sites
T24163 167-174 NN denotes binding
T24162 161-166 NN denotes NF-κB
T24161 159-160 NN denotes B
T24160 151-158 NN denotes subtype
T24159 145-150 NN denotes HIV-1
T24158 141-144 DT denotes the
T24157 138-140 IN denotes of
T24156 127-137 NN denotes disruption
T24155 118-126 JJ denotes Specific
T24154 116-117 -RRB- denotes )
T24153 115-116 NN denotes C
T24152 114-115 -LRB- denotes (
T24151 108-113 NN denotes bars.
T24150 106-107 DT denotes a
T24149 101-105 IN denotes with
T24148 91-100 VB denotes indicated
T24147 87-90 VB denotes are
T24146 81-86 NN denotes NFAT5
T24145 77-80 CC denotes and
T24144 71-76 NN denotes NF-κB
T24143 68-70 IN denotes of
T24142 60-67 NN denotes binding
T24141 56-59 DT denotes the
T24140 53-55 IN denotes by
T24139 44-52 NN denotes cleavage
T24138 42-43 CD denotes I
T24137 36-41 NN denotes DNase
T24136 31-35 IN denotes from
T24135 21-30 VB denotes protected
T24134 17-20 VB denotes are
T24133 12-16 WDT denotes that
T24132 4-11 NN denotes regions
T24131 0-3 DT denotes The
R17738 T24132 T24131 arg1Of regions,The
R17739 T24132 T24133 arg1Of regions,that
R17740 T24132 T24134 arg1Of regions,are
R17741 T24132 T24135 arg2Of regions,protected
R17742 T24132 T24147 arg1Of regions,are
R17743 T24132 T24148 arg2Of regions,indicated
R17744 T24135 T24134 arg2Of protected,are
R17745 T24135 T24136 arg1Of protected,from
R17746 T24135 T24140 arg1Of protected,by
R17747 T24139 T24136 arg2Of cleavage,from
R17748 T24139 T24137 arg1Of cleavage,DNase
R17749 T24139 T24138 arg1Of cleavage,I
R17750 T24142 T24140 arg2Of binding,by
R17751 T24142 T24141 arg1Of binding,the
R17752 T24142 T24143 arg1Of binding,of
R17753 T24144 T24145 arg1Of NF-κB,and
R17754 T24145 T24143 arg2Of and,of
R17755 T24146 T24145 arg2Of NFAT5,and
R17756 T24148 T24147 arg2Of indicated,are
R17757 T24148 T24149 arg1Of indicated,with
R17758 T24151 T24149 arg2Of bars.,with
R17759 T24151 T24150 arg1Of bars.,a
R17760 T24153 T24152 arg2Of C,(
R17761 T24154 T24152 arg3Of ),(
R17762 T24156 T24152 arg1Of disruption,(
R17763 T24156 T24155 arg1Of disruption,Specific
R17764 T24156 T24157 arg1Of disruption,of
R17765 T24156 T24166 arg1Of disruption,abrogates
R17766 T24164 T24157 arg2Of sites,of
R17767 T24164 T24158 arg1Of sites,the
R17768 T24164 T24159 arg1Of sites,HIV-1
R17769 T24164 T24160 arg1Of sites,subtype
R17770 T24164 T24161 arg1Of sites,B
R17771 T24164 T24162 arg1Of sites,NF-κB
R17772 T24164 T24163 arg1Of sites,binding
R17773 T24166 T24147 modOf abrogates,are
R17774 T24166 T24165 arg1Of abrogates,effectively
R17775 T24169 T24166 arg2Of binding,abrogates
R17776 T24169 T24167 arg1Of binding,recombinant
R17777 T24169 T24168 arg1Of binding,p50/p65

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23840 219-222 Protein denotes p65
T23839 215-218 Protein denotes p50
T23838 81-86 Protein denotes NFAT5
T23837 36-43 Protein denotes DNase I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24346 215-218 http://www.uniprot.org/uniprot/P19838 denotes p50
T24322 81-86 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24354 219-222 http://www.uniprot.org/uniprot/P21579 denotes p65
T24350 219-222 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-MF

Id Subject Object Predicate Lexical cue
T23874 60-76 http://purl.obolibrary.org/obo/GO_0051059 denotes binding of NF-κB
T23869 223-230 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23868 167-174 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23867 60-67 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T23767 0-231 Sentence denotes The regions that are protected from DNase I cleavage by the binding of NF-κB and NFAT5 are indicated with a bars. (C) Specific disruption of the HIV-1 subtype B NF-κB binding sites effectively abrogates recombinant p50/p65 binding.
T178 0-231 Sentence denotes The regions that are protected from DNase I cleavage by the binding of NF-κB and NFAT5 are indicated with a bars. (C) Specific disruption of the HIV-1 subtype B NF-κB binding sites effectively abrogates recombinant p50/p65 binding.

simple1

Id Subject Object Predicate Lexical cue
T23933 219-222 Protein denotes p65
T23932 215-218 Protein denotes p50
T23931 81-86 Protein denotes NFAT5
T23930 36-43 Protein denotes DNase I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25136 193-202 Negative_regulation denotes abrogates
T25135 223-230 Binding denotes binding
T25134 44-52 Protein_catabolism denotes cleavage
T25133 60-67 Binding denotes binding
T25111 219-222 Protein denotes p65
T25110 215-218 Protein denotes p50
T25109 81-86 Protein denotes NFAT5
T25108 36-43 Protein denotes DNase I
R18421 T25108 T25134 themeOf DNase I,cleavage
R18422 T25109 T25133 themeOf NFAT5,binding
R18423 T25110 T25135 themeOf p50,binding
R18424 T25111 T25135 themeOf p65,binding
R18432 T25135 T25136 themeOf binding,abrogates
R18433 T25135 T25136 themeOf binding,abrogates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24450 60-67 Binding denotes binding
T24449 44-52 Protein_catabolism denotes cleavage
T24427 219-222 Protein denotes p65
T24426 215-218 Protein denotes p50
T24425 81-86 Protein denotes NFAT5
T24424 36-43 Protein denotes DNase I
T24495 223-230 Binding denotes binding
T24494 193-202 Negative_regulation denotes abrogates
R17950 T24424 T24449 themeOf DNase I,cleavage
R17951 T24425 T24450 themeOf NFAT5,binding
R17952 T24426 T24495 themeOf p50,binding
R17953 T24427 T24495 themeOf p65,binding
R17970 T24495 T24494 themeOf binding,abrogates
R17971 T24495 T24494 themeOf binding,abrogates

DLUT931

Id Subject Object Predicate Lexical cue
T24402 193-202 Negative_regulation denotes abrogates
T24401 223-230 Binding denotes binding
T24400 60-67 Binding denotes binding
T24399 44-52 Protein_catabolism denotes cleavage
T24376 219-222 Protein denotes p65
T24375 215-218 Protein denotes p50
T24374 81-86 Protein denotes NFAT5
T24373 36-43 Protein denotes DNase I
R17933 T24373 T24399 themeOf DNase I,cleavage
R17934 T24374 T24400 themeOf NFAT5,binding
R17935 T24375 T24401 themeOf p50,binding
R17944 T24401 T24402 themeOf binding,abrogates
R17936 T24375 T24401 themeOf p50,binding
R17937 T24376 T24401 themeOf p65,binding
R17945 T24401 T24402 themeOf binding,abrogates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25193 161-180 Binding denotes NF-κB binding sites
T25192 161-230 Negative_regulation denotes NF-κB binding sites effectively abrogates recombinant p50/p65 binding
T25188 203-230 Binding denotes recombinant p50/p65 binding
T25186 175-180 Entity denotes sites
T25182 71-76 Protein denotes NF-κB
T25179 36-43 Protein denotes DNase I
T25176 81-86 Protein denotes NFAT5
T25173 219-222 Protein denotes p65
T25166 215-222 Protein denotes p50/p65
T25162 215-222 Protein denotes p50/p65
T25157 161-180 Protein denotes NF-κB binding sites
R18436 T25157 T25192 causeOf NF-κB binding sites,NF-κB binding sites effectively abrogates recombinant p50/p65 binding
R18437 T25157 T25193 themeOf NF-κB binding sites,NF-κB binding sites
R18438 T25162 T25188 themeOf p50/p65,recombinant p50/p65 binding
R18444 T25188 T25192 themeOf recombinant p50/p65 binding,NF-κB binding sites effectively abrogates recombinant p50/p65 binding

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24917 230-231 . denotes .
T24916 223-230 JJ denotes binding
T24915 215-222 NNS denotes p50/p65
T24914 203-214 JJ denotes recombinant
T24913 193-202 VBZ denotes abrogates
T24912 181-192 RB denotes effectively
T24911 175-180 NNS denotes sites
T24910 167-174 JJ denotes binding
T24909 161-166 NNP denotes NF-κB
T24908 159-160 NNP denotes B
T24907 151-158 NN denotes subtype
T24906 145-150 NNP denotes HIV-1
T24905 141-144 DT denotes the
T24904 138-140 IN denotes of
T24903 127-137 NN denotes disruption
T24902 118-126 JJ denotes Specific
T24901 116-117 -RRB- denotes )
T24900 115-116 $ denotes C
T24899 114-115 -LRB- denotes (
T24898 112-113 . denotes .
T24897 108-112 NNS denotes bars
T24896 106-107 DT denotes a
T24895 101-105 IN denotes with
T24894 91-100 VBN denotes indicated
T24893 87-90 VBP denotes are
T24892 81-86 NNP denotes NFAT5
T24891 77-80 CC denotes and
T24890 71-76 NNP denotes NF-κB
T24889 68-70 IN denotes of
T24888 60-67 JJ denotes binding
T24887 56-59 DT denotes the
T24886 53-55 IN denotes by
T24885 44-52 VBP denotes cleavage
T24884 42-43 PRP denotes I
T24883 36-41 NNP denotes DNase
T24882 31-35 IN denotes from
T24881 21-30 VBN denotes protected
T24880 17-20 VBP denotes are
T24879 12-16 WDT denotes that
T24878 4-11 NNS denotes regions
T24877 0-3 DT denotes The
R18203 T24877 T24878 det The,regions
R18204 T24878 T24885 dobj regions,cleavage
R18205 T24879 T24881 nsubjpass that,protected
R18206 T24880 T24881 auxpass are,protected
R18207 T24881 T24878 relcl protected,regions
R18208 T24882 T24881 prep from,protected
R18209 T24883 T24882 pobj DNase,from
R18210 T24884 T24885 nsubj I,cleavage
R18211 T24885 T24885 ROOT cleavage,cleavage
R18212 T24886 T24885 prep by,cleavage
R18213 T24887 T24888 det the,binding
R18214 T24888 T24886 pobj binding,by
R18215 T24889 T24888 prep of,binding
R18216 T24890 T24889 pobj NF-κB,of
R18217 T24891 T24890 cc and,NF-κB
R18218 T24892 T24890 conj NFAT5,NF-κB
R18219 T24893 T24894 auxpass are,indicated
R18220 T24894 T24885 conj indicated,cleavage
R18221 T24895 T24894 prep with,indicated
R18222 T24896 T24897 det a,bars
R18223 T24897 T24895 pobj bars,with
R18224 T24898 T24885 punct .,cleavage
R18225 T24899 T24900 punct (,C
R18226 T24900 T24900 ROOT C,C
R18227 T24901 T24900 punct ),C
R18228 T24902 T24903 amod Specific,disruption
R18229 T24903 T24913 nsubj disruption,abrogates
R18230 T24904 T24903 prep of,disruption
R18231 T24905 T24909 det the,NF-κB
R18232 T24906 T24909 compound HIV-1,NF-κB
R18233 T24907 T24908 compound subtype,B
R18234 T24908 T24909 compound B,NF-κB
R18235 T24909 T24904 pobj NF-κB,of
R18236 T24910 T24911 amod binding,sites
R18237 T24911 T24913 dep sites,abrogates
R18238 T24912 T24913 advmod effectively,abrogates
R18239 T24913 T24913 ROOT abrogates,abrogates
R18240 T24914 T24915 compound recombinant,p50/p65
R18241 T24915 T24913 dobj p50/p65,abrogates
R18242 T24916 T24913 oprd binding,abrogates
R18243 T24917 T24913 punct .,abrogates

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24543 145-166 Protein denotes HIV-1 subtype B NF-κB
T24542 60-67 Binding denotes binding
T24541 60-67 Binding denotes binding
T24540 81-86 Protein denotes NFAT5
T24539 71-76 Protein denotes NF-κB
T24538 36-43 Protein denotes DNase I
T24547 223-230 Binding denotes binding
T24546 127-137 Negative_regulation denotes disruption
T24545 219-222 Protein denotes p65
T24544 215-218 Protein denotes p50
R17975 T24539 T24541 themeOf NF-κB,binding
R17976 T24540 T24542 themeOf NFAT5,binding
R17977 T24543 T24546 themeOf HIV-1 subtype B NF-κB,disruption
R17978 T24544 T24547 themeOf p50,binding

testone

Id Subject Object Predicate Lexical cue
T23676 223-230 Binding denotes binding
T23675 127-137 Negative_regulation denotes disruption
T23674 60-67 Binding denotes binding
T23651 219-222 Protein denotes p65
T23650 215-218 Protein denotes p50
T23649 81-86 Protein denotes NFAT5
T23648 36-43 Protein denotes DNase I
R17527 T23648 T23674 themeOf DNase I,binding
R17528 T23649 T23674 themeOf NFAT5,binding
R17529 T23650 T23676 themeOf p50,binding
R17530 T23651 T23676 themeOf p65,binding

test3

Id Subject Object Predicate Lexical cue
T23742 223-230 Binding denotes binding
T23741 219-222 Protein denotes p65
T23740 215-218 Protein denotes p50
T23739 81-86 Protein denotes NFAT5
T23738 36-43 Protein denotes DNase I
T23700 219-222 Protein denotes p65
T23699 215-218 Protein denotes p50
T23698 81-86 Protein denotes NFAT5
T23697 36-43 Protein denotes DNase I
R17540 T23740 T23742 themeOf p50,binding
R17541 T23741 T23742 themeOf p65,binding