PMC:3320587 / 29326-29639
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24130 | 311-312 | -RRB- | denotes | ) |
| T24129 | 309-311 | NN | denotes | ng |
| T24128 | 305-308 | CD | denotes | 250 |
| T24127 | 301-304 | CC | denotes | and |
| T24126 | 299-300 | -COMMA- | denotes | , |
| T24125 | 297-299 | NN | denotes | ng |
| T24124 | 294-296 | CD | denotes | 50 |
| T24123 | 292-293 | -COMMA- | denotes | , |
| T24122 | 290-292 | NN | denotes | ng |
| T24121 | 287-289 | CD | denotes | 10 |
| T24120 | 286-287 | -LRB- | denotes | ( |
| T24119 | 280-285 | NN | denotes | NFAT5 |
| T24118 | 277-279 | CC | denotes | or |
| T24117 | 275-276 | -COMMA- | denotes | , |
| T24116 | 274-275 | -RRB- | denotes | ) |
| T24115 | 272-274 | NN | denotes | ng |
| T24114 | 268-271 | CD | denotes | 500 |
| T24113 | 264-267 | CC | denotes | and |
| T24112 | 262-263 | -COMMA- | denotes | , |
| T24111 | 260-262 | NN | denotes | ng |
| T24110 | 256-259 | CD | denotes | 100 |
| T24109 | 254-255 | -COMMA- | denotes | , |
| T24108 | 252-254 | NN | denotes | ng |
| T24107 | 249-251 | CD | denotes | 25 |
| T24106 | 248-249 | -LRB- | denotes | ( |
| T24105 | 246-247 | -RRB- | denotes | ) |
| T24104 | 239-246 | NN | denotes | p50/p65 |
| T24103 | 238-239 | -LRB- | denotes | ( |
| T24102 | 232-237 | NN | denotes | NF-κB |
| T24101 | 220-231 | JJ | denotes | recombinant |
| T24100 | 217-219 | IN | denotes | of |
| T24099 | 202-216 | NN | denotes | concentrations |
| T24098 | 191-201 | VB | denotes | increasing |
| T24097 | 187-190 | CC | denotes | and |
| T24096 | 163-186 | NN | denotes | HIV-1Lai/Bal-env-N5-Mut |
| T24095 | 159-162 | CC | denotes | and |
| T24094 | 139-158 | NN | denotes | HIV-1Lai/Bal-env-WT |
| T24093 | 134-138 | IN | denotes | from |
| T24092 | 132-133 | -RRB- | denotes | ) |
| T24091 | 128-132 | NN | denotes | site |
| T24090 | 122-127 | NN | denotes | start |
| T24089 | 108-121 | NN | denotes | transcription |
| T24088 | 104-107 | DT | denotes | the |
| T24087 | 101-103 | TO | denotes | to |
| T24086 | 92-100 | JJ | denotes | relative |
| T24085 | 89-91 | NN | denotes | nt |
| T24084 | 86-88 | CD | denotes | +4 |
| T24083 | 83-85 | TO | denotes | to |
| T24082 | 78-82 | CD | denotes | -262 |
| T24081 | 77-78 | -LRB- | denotes | ( |
| T24080 | 67-76 | NN | denotes | fragments |
| T24079 | 63-66 | NN | denotes | LTR |
| T24078 | 57-62 | NN | denotes | HIV-1 |
| T24077 | 51-56 | VB | denotes | using |
| T24076 | 45-50 | VB | denotes | shown |
| T24075 | 42-44 | VB | denotes | is |
| T24074 | 33-41 | NN | denotes | analysis |
| T24073 | 20-32 | NN | denotes | footprinting |
| T24072 | 13-19 | NN | denotes | DNaseI |
| T24071 | 0-12 | JJ | denotes | Quantitative |
| R17677 | T24074 | T24071 | arg1Of | analysis,Quantitative |
| R17678 | T24074 | T24072 | arg1Of | analysis,DNaseI |
| R17679 | T24074 | T24073 | arg1Of | analysis,footprinting |
| R17680 | T24074 | T24075 | arg1Of | analysis,is |
| R17681 | T24074 | T24076 | arg2Of | analysis,shown |
| R17682 | T24074 | T24077 | arg1Of | analysis,using |
| R17683 | T24076 | T24075 | arg2Of | shown,is |
| R17684 | T24077 | T24076 | arg3Of | using,shown |
| R17685 | T24080 | T24078 | arg1Of | fragments,HIV-1 |
| R17686 | T24080 | T24079 | arg1Of | fragments,LTR |
| R17687 | T24080 | T24081 | arg1Of | fragments,( |
| R17688 | T24080 | T24093 | arg1Of | fragments,from |
| R17689 | T24080 | T24097 | arg1Of | fragments,and |
| R17690 | T24082 | T24083 | arg1Of | -262,to |
| R17691 | T24084 | T24083 | arg2Of | +4,to |
| R17692 | T24085 | T24081 | arg2Of | nt,( |
| R17693 | T24085 | T24082 | arg1Of | nt,-262 |
| R17694 | T24085 | T24086 | arg1Of | nt,relative |
| R17695 | T24086 | T24087 | arg1Of | relative,to |
| R17696 | T24091 | T24087 | arg2Of | site,to |
| R17697 | T24091 | T24088 | arg1Of | site,the |
| R17698 | T24091 | T24089 | arg1Of | site,transcription |
| R17699 | T24091 | T24090 | arg1Of | site,start |
| R17700 | T24092 | T24081 | arg3Of | ),( |
| R17701 | T24094 | T24095 | arg1Of | HIV-1Lai/Bal-env-WT,and |
| R17702 | T24095 | T24093 | arg2Of | and,from |
| R17703 | T24096 | T24095 | arg2Of | HIV-1Lai/Bal-env-N5-Mut,and |
| R17704 | T24097 | T24077 | arg2Of | and,using |
| R17705 | T24099 | T24098 | arg1Of | concentrations,increasing |
| R17706 | T24099 | T24100 | arg1Of | concentrations,of |
| R17707 | T24099 | T24106 | arg1Of | concentrations,( |
| R17708 | T24099 | T24118 | arg1Of | concentrations,or |
| R17709 | T24102 | T24100 | arg2Of | NF-κB,of |
| R17710 | T24102 | T24101 | arg1Of | NF-κB,recombinant |
| R17711 | T24102 | T24103 | arg1Of | NF-κB,( |
| R17712 | T24104 | T24103 | arg2Of | p50/p65,( |
| R17713 | T24105 | T24103 | arg3Of | ),( |
| R17714 | T24108 | T24107 | arg1Of | ng,25 |
| R17715 | T24108 | T24109 | arg1Of | ng,"," |
| R17716 | T24109 | T24113 | arg1Of | ",",and |
| R17717 | T24111 | T24109 | arg2Of | ng,"," |
| R17718 | T24111 | T24110 | arg1Of | ng,100 |
| R17719 | T24113 | T24106 | arg2Of | and,( |
| R17720 | T24113 | T24112 | arg1Of | and,"," |
| R17721 | T24115 | T24113 | arg2Of | ng,and |
| R17722 | T24115 | T24114 | arg1Of | ng,500 |
| R17723 | T24116 | T24106 | arg3Of | ),( |
| R17724 | T24118 | T24097 | arg2Of | or,and |
| R17725 | T24118 | T24117 | arg1Of | or,"," |
| R17726 | T24119 | T24118 | arg2Of | NFAT5,or |
| R17727 | T24119 | T24120 | arg1Of | NFAT5,( |
| R17728 | T24122 | T24121 | arg1Of | ng,10 |
| R17729 | T24122 | T24123 | arg1Of | ng,"," |
| R17730 | T24123 | T24127 | arg1Of | ",",and |
| R17731 | T24125 | T24123 | arg2Of | ng,"," |
| R17732 | T24125 | T24124 | arg1Of | ng,50 |
| R17733 | T24127 | T24120 | arg2Of | and,( |
| R17734 | T24127 | T24126 | arg1Of | and,"," |
| R17735 | T24129 | T24127 | arg2Of | ng,and |
| R17736 | T24129 | T24128 | arg1Of | ng,250 |
| R17737 | T24130 | T24120 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23836 | 280-285 | Protein | denotes | NFAT5 |
| T23835 | 243-246 | Protein | denotes | p65 |
| T23834 | 239-242 | Protein | denotes | p50 |
| T23833 | 176-179 | Protein | denotes | env |
| T23832 | 152-155 | Protein | denotes | env |
| T23831 | 13-19 | Protein | denotes | DNaseI |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24345 | 239-242 | http://www.uniprot.org/uniprot/P19838 | denotes | p50 |
| T24335 | 176-179 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T24334 | 152-155 | http://www.uniprot.org/uniprot/P04578 | denotes | env |
| T24321 | 280-285 | http://www.uniprot.org/uniprot/O94916 | denotes | NFAT5 |
| T24353 | 243-246 | http://www.uniprot.org/uniprot/P21579 | denotes | p65 |
| T24349 | 243-246 | http://www.uniprot.org/uniprot/Q04206 | denotes | p65 |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23858 | 108-121 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23766 | 0-313 | Sentence | denotes | Quantitative DNaseI footprinting analysis is shown using HIV-1 LTR fragments (-262 to +4 nt relative to the transcription start site) from HIV-1Lai/Bal-env-WT and HIV-1Lai/Bal-env-N5-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng), or NFAT5 (10 ng, 50 ng, and 250 ng). |
| T177 | 0-313 | Sentence | denotes | Quantitative DNaseI footprinting analysis is shown using HIV-1 LTR fragments (-262 to +4 nt relative to the transcription start site) from HIV-1Lai/Bal-env-WT and HIV-1Lai/Bal-env-N5-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng), or NFAT5 (10 ng, 50 ng, and 250 ng). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23929 | 280-285 | Protein | denotes | NFAT5 |
| T23928 | 243-246 | Protein | denotes | p65 |
| T23927 | 239-242 | Protein | denotes | p50 |
| T23926 | 176-179 | Protein | denotes | env |
| T23925 | 152-155 | Protein | denotes | env |
| T23924 | 13-19 | Protein | denotes | DNaseI |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25107 | 280-285 | Protein | denotes | NFAT5 |
| T25106 | 243-246 | Protein | denotes | p65 |
| T25105 | 239-242 | Protein | denotes | p50 |
| T25104 | 176-179 | Protein | denotes | env |
| T25103 | 152-155 | Protein | denotes | env |
| T25102 | 13-19 | Protein | denotes | DNaseI |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24423 | 280-285 | Protein | denotes | NFAT5 |
| T24422 | 243-246 | Protein | denotes | p65 |
| T24421 | 239-242 | Protein | denotes | p50 |
| T24420 | 176-179 | Protein | denotes | env |
| T24419 | 152-155 | Protein | denotes | env |
| T24418 | 13-19 | Protein | denotes | DNaseI |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24372 | 280-285 | Protein | denotes | NFAT5 |
| T24371 | 243-246 | Protein | denotes | p65 |
| T24370 | 239-242 | Protein | denotes | p50 |
| T24369 | 176-179 | Protein | denotes | env |
| T24368 | 152-155 | Protein | denotes | env |
| T24367 | 13-19 | Protein | denotes | DNaseI |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25185 | 280-285 | Protein | denotes | NFAT5 |
| T25181 | 13-19 | Protein | denotes | DNaseI |
| T25160 | 243-246 | Protein | denotes | p65 |
| T25156 | 239-246 | Protein | denotes | p50/p65 |
| T25153 | 239-246 | Protein | denotes | p50/p65 |
| T25144 | 217-247 | Protein | denotes | of recombinant NF-κB (p50/p65) |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24876 | 312-313 | . | denotes | . |
| T24875 | 311-312 | -RRB- | denotes | ) |
| T24874 | 309-311 | NN | denotes | ng |
| T24873 | 305-308 | CD | denotes | 250 |
| T24872 | 301-304 | CC | denotes | and |
| T24871 | 299-300 | , | denotes | , |
| T24870 | 297-299 | NN | denotes | ng |
| T24869 | 294-296 | CD | denotes | 50 |
| T24868 | 292-293 | , | denotes | , |
| T24867 | 290-292 | NN | denotes | ng |
| T24866 | 287-289 | CD | denotes | 10 |
| T24865 | 286-287 | -LRB- | denotes | ( |
| T24864 | 280-285 | NNP | denotes | NFAT5 |
| T24863 | 277-279 | CC | denotes | or |
| T24862 | 275-276 | , | denotes | , |
| T24861 | 274-275 | -RRB- | denotes | ) |
| T24860 | 272-274 | NN | denotes | ng |
| T24859 | 268-271 | CD | denotes | 500 |
| T24858 | 264-267 | CC | denotes | and |
| T24857 | 262-263 | , | denotes | , |
| T24856 | 260-262 | NN | denotes | ng |
| T24855 | 256-259 | CD | denotes | 100 |
| T24854 | 254-255 | , | denotes | , |
| T24853 | 252-254 | NN | denotes | ng |
| T24852 | 249-251 | CD | denotes | 25 |
| T24851 | 248-249 | -LRB- | denotes | ( |
| T24850 | 246-247 | -RRB- | denotes | ) |
| T24849 | 239-246 | NNS | denotes | p50/p65 |
| T24848 | 238-239 | -LRB- | denotes | ( |
| T24847 | 232-237 | NNP | denotes | NF-κB |
| T24846 | 220-231 | JJ | denotes | recombinant |
| T24845 | 217-219 | IN | denotes | of |
| T24844 | 202-216 | NNS | denotes | concentrations |
| T24843 | 191-201 | VBG | denotes | increasing |
| T24842 | 187-190 | CC | denotes | and |
| T24841 | 172-186 | NN | denotes | Bal-env-N5-Mut |
| T24840 | 171-172 | NN | denotes | / |
| T24839 | 163-171 | JJ | denotes | HIV-1Lai |
| T24838 | 159-162 | CC | denotes | and |
| T24837 | 148-158 | NN | denotes | Bal-env-WT |
| T24836 | 147-148 | NN | denotes | / |
| T24835 | 139-147 | JJ | denotes | HIV-1Lai |
| T24834 | 134-138 | IN | denotes | from |
| T24833 | 132-133 | -RRB- | denotes | ) |
| T24832 | 128-132 | NN | denotes | site |
| T24831 | 122-127 | VB | denotes | start |
| T24830 | 108-121 | NN | denotes | transcription |
| T24829 | 104-107 | DT | denotes | the |
| T24828 | 101-103 | TO | denotes | to |
| T24827 | 92-100 | JJ | denotes | relative |
| T24826 | 89-91 | NN | denotes | nt |
| T24825 | 86-88 | CD | denotes | +4 |
| T24824 | 83-85 | TO | denotes | to |
| T24823 | 78-82 | CD | denotes | -262 |
| T24822 | 77-78 | -LRB- | denotes | ( |
| T24821 | 67-76 | NNS | denotes | fragments |
| T24820 | 63-66 | NNP | denotes | LTR |
| T24819 | 57-62 | NNP | denotes | HIV-1 |
| T24818 | 51-56 | VBG | denotes | using |
| T24817 | 45-50 | VBN | denotes | shown |
| T24816 | 42-44 | VBZ | denotes | is |
| T24815 | 33-41 | NN | denotes | analysis |
| T24814 | 20-32 | NN | denotes | footprinting |
| T24813 | 13-19 | NNP | denotes | DNaseI |
| T24812 | 0-12 | JJ | denotes | Quantitative |
| R18138 | T24812 | T24815 | amod | Quantitative,analysis |
| R18139 | T24813 | T24815 | compound | DNaseI,analysis |
| R18140 | T24814 | T24815 | compound | footprinting,analysis |
| R18141 | T24815 | T24817 | nsubjpass | analysis,shown |
| R18142 | T24816 | T24817 | auxpass | is,shown |
| R18143 | T24817 | T24817 | ROOT | shown,shown |
| R18144 | T24818 | T24817 | advcl | using,shown |
| R18145 | T24819 | T24821 | compound | HIV-1,fragments |
| R18146 | T24820 | T24821 | compound | LTR,fragments |
| R18147 | T24821 | T24818 | dobj | fragments,using |
| R18148 | T24822 | T24821 | punct | (,fragments |
| R18149 | T24823 | T24825 | quantmod | -262,+4 |
| R18150 | T24824 | T24825 | advmod | to,+4 |
| R18151 | T24825 | T24826 | nummod | +4,nt |
| R18152 | T24826 | T24821 | appos | nt,fragments |
| R18153 | T24827 | T24826 | amod | relative,nt |
| R18154 | T24828 | T24831 | aux | to,start |
| R18155 | T24829 | T24830 | det | the,transcription |
| R18156 | T24830 | T24831 | nsubj | transcription,start |
| R18157 | T24831 | T24818 | xcomp | start,using |
| R18158 | T24832 | T24831 | dobj | site,start |
| R18159 | T24833 | T24831 | punct | ),start |
| R18160 | T24834 | T24831 | prep | from,start |
| R18161 | T24835 | T24837 | amod | HIV-1Lai,Bal-env-WT |
| R18162 | T24836 | T24837 | compound | /,Bal-env-WT |
| R18163 | T24837 | T24834 | pobj | Bal-env-WT,from |
| R18164 | T24838 | T24837 | cc | and,Bal-env-WT |
| R18165 | T24839 | T24841 | amod | HIV-1Lai,Bal-env-N5-Mut |
| R18166 | T24840 | T24841 | compound | /,Bal-env-N5-Mut |
| R18167 | T24841 | T24837 | conj | Bal-env-N5-Mut,Bal-env-WT |
| R18168 | T24842 | T24841 | cc | and,Bal-env-N5-Mut |
| R18169 | T24843 | T24841 | conj | increasing,Bal-env-N5-Mut |
| R18170 | T24844 | T24843 | dobj | concentrations,increasing |
| R18171 | T24845 | T24844 | prep | of,concentrations |
| R18172 | T24846 | T24847 | amod | recombinant,NF-κB |
| R18173 | T24847 | T24845 | pobj | NF-κB,of |
| R18174 | T24848 | T24849 | punct | (,p50/p65 |
| R18175 | T24849 | T24847 | appos | p50/p65,NF-κB |
| R18176 | T24850 | T24847 | punct | ),NF-κB |
| R18177 | T24851 | T24853 | punct | (,ng |
| R18178 | T24852 | T24853 | nummod | 25,ng |
| R18179 | T24853 | T24844 | appos | ng,concentrations |
| R18180 | T24854 | T24853 | punct | ",",ng |
| R18181 | T24855 | T24856 | nummod | 100,ng |
| R18182 | T24856 | T24853 | conj | ng,ng |
| R18183 | T24857 | T24856 | punct | ",",ng |
| R18184 | T24858 | T24856 | cc | and,ng |
| R18185 | T24859 | T24860 | nummod | 500,ng |
| R18186 | T24860 | T24856 | conj | ng,ng |
| R18187 | T24861 | T24860 | punct | ),ng |
| R18188 | T24862 | T24860 | punct | ",",ng |
| R18189 | T24863 | T24860 | cc | or,ng |
| R18190 | T24864 | T24860 | conj | NFAT5,ng |
| R18191 | T24865 | T24867 | punct | (,ng |
| R18192 | T24866 | T24867 | nummod | 10,ng |
| R18193 | T24867 | T24864 | appos | ng,NFAT5 |
| R18194 | T24868 | T24867 | punct | ",",ng |
| R18195 | T24869 | T24870 | nummod | 50,ng |
| R18196 | T24870 | T24867 | conj | ng,ng |
| R18197 | T24871 | T24870 | punct | ",",ng |
| R18198 | T24872 | T24870 | cc | and,ng |
| R18199 | T24873 | T24874 | nummod | 250,ng |
| R18200 | T24874 | T24870 | conj | ng,ng |
| R18201 | T24875 | T24867 | punct | ),ng |
| R18202 | T24876 | T24817 | punct | .,shown |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24537 | 280-285 | Protein | denotes | NFAT5 |
| T24536 | 243-246 | Protein | denotes | p65 |
| T24535 | 239-242 | Protein | denotes | p50 |
| T24534 | 220-237 | Protein | denotes | recombinant NF-κB |
| T24533 | 183-186 | Protein | denotes | Mut |
| T24532 | 180-182 | Protein | denotes | N5 |
| T24531 | 176-179 | Protein | denotes | env |
| T24530 | 156-158 | Protein | denotes | WT |
| T24529 | 152-155 | Protein | denotes | env |
| T24528 | 13-19 | Protein | denotes | DNaseI |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23647 | 280-285 | Protein | denotes | NFAT5 |
| T23646 | 243-246 | Protein | denotes | p65 |
| T23645 | 239-242 | Protein | denotes | p50 |
| T23644 | 176-179 | Protein | denotes | env |
| T23643 | 152-155 | Protein | denotes | env |
| T23642 | 13-19 | Protein | denotes | DNaseI |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23737 | 280-285 | Protein | denotes | NFAT5 |
| T23736 | 243-246 | Protein | denotes | p65 |
| T23735 | 239-242 | Protein | denotes | p50 |
| T23734 | 176-179 | Protein | denotes | env |
| T23733 | 152-155 | Protein | denotes | env |
| T23732 | 13-19 | Protein | denotes | DNaseI |
| T23696 | 280-285 | Protein | denotes | NFAT5 |
| T23695 | 243-246 | Protein | denotes | p65 |
| T23694 | 239-242 | Protein | denotes | p50 |
| T23693 | 176-179 | Protein | denotes | env |
| T23692 | 152-155 | Protein | denotes | env |
| T23691 | 13-19 | Protein | denotes | DNaseI |