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PMC:3320587 / 28627-30780 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24315 2148-2152 NN denotes bars
T24314 2146-2147 DT denotes a
T24313 2141-2145 IN denotes with
T24312 2131-2140 VB denotes indicated
T24311 2127-2130 VB denotes are
T24310 2121-2126 NN denotes NFAT5
T24309 2109-2120 JJ denotes recombinant
T24308 2106-2108 IN denotes of
T24307 2098-2105 NN denotes binding
T24306 2094-2097 DT denotes the
T24305 2091-2093 IN denotes by
T24304 2082-2090 NN denotes cleavage
T24303 2080-2081 CD denotes I
T24302 2074-2079 NN denotes DNase
T24301 2069-2073 IN denotes from
T24300 2059-2068 VB denotes protected
T24299 2055-2058 VB denotes are
T24298 2050-2054 WDT denotes that
T24297 2042-2049 NN denotes regions
T24296 2038-2041 DT denotes The
T24295 2035-2036 -RRB- denotes )
T24294 2033-2035 NN denotes ng
T24293 2029-2032 CD denotes 250
T24292 2025-2028 CC denotes and
T24291 2023-2024 -COMMA- denotes ,
T24290 2021-2023 NN denotes ng
T24289 2018-2020 CD denotes 50
T24288 2016-2017 -COMMA- denotes ,
T24287 2014-2016 NN denotes ng
T24286 2011-2013 CD denotes 10
T24285 2010-2011 -LRB- denotes (
T24284 2004-2009 NN denotes NFAT5
T24283 1992-2003 JJ denotes recombinant
T24282 1989-1991 IN denotes of
T24281 1974-1988 NN denotes concentrations
T24280 1963-1973 VB denotes increasing
T24279 1959-1962 CC denotes and
T24278 1950-1958 NN denotes I+II-Mut
T24277 1930-1949 NN denotes HIV-1Lai/Bal-env-κB
T24228 1615-1618 VB denotes are
T24227 1609-1614 NN denotes NF-κB
T24226 1597-1608 JJ denotes recombinant
T24225 1594-1596 IN denotes of
T24224 1586-1593 NN denotes binding
T24223 1582-1585 DT denotes the
T24222 1579-1581 IN denotes by
T24221 1570-1578 NN denotes cleavage
T24220 1568-1569 CD denotes I
T24219 1562-1567 NN denotes DNase
T24218 1557-1561 IN denotes from
T24217 1547-1556 VB denotes protected
T24216 1543-1546 VB denotes are
T24215 1538-1542 WDT denotes that
T24214 1530-1537 NN denotes regions
T24213 1526-1529 DT denotes The
T24212 1523-1524 -RRB- denotes )
T24211 1521-1523 NN denotes ng
T24210 1517-1520 CD denotes 500
T24209 1513-1516 CC denotes and
T24208 1511-1512 -COMMA- denotes ,
T24207 1509-1511 NN denotes ng
T24206 1505-1508 CD denotes 100
T24205 1503-1504 -COMMA- denotes ,
T24204 1501-1503 NN denotes ng
T24203 1498-1500 CD denotes 25
T24202 1497-1498 -LRB- denotes (
T24201 1495-1496 -RRB- denotes )
T24200 1488-1495 NN denotes p50/p65
T24199 1487-1488 -LRB- denotes (
T24198 1481-1486 NN denotes NF-κB
T24197 1469-1480 JJ denotes recombinant
T24196 1466-1468 IN denotes of
T24195 1451-1465 NN denotes concentrations
T24194 1440-1450 VB denotes increasing
T24193 1436-1439 CC denotes and
T24192 1427-1435 NN denotes I+II-Mut
T24191 1407-1426 NN denotes HIV-1Lai/Bal-env-κB
T24190 1403-1406 CC denotes and
T24189 1401-1402 -COMMA- denotes ,
T24188 1395-1401 NN denotes II-Mut
T24187 1375-1394 NN denotes HIV-1Lai/Bal-env-κB
T24186 1373-1374 -COMMA- denotes ,
T24185 1368-1373 NN denotes I-Mut
T24184 1348-1367 NN denotes HIV-1Lai/Bal-env-κB
T24183 1346-1347 -COMMA- denotes ,
T24182 1327-1346 NN denotes HIV-1Lai/Bal-env-WT
T24181 1322-1326 IN denotes from
T24180 1319-1321 CD denotes +4
T24179 1316-1318 TO denotes to
T24178 1311-1315 CD denotes −262
T24177 1299-1310 NN denotes nucleotides
T24176 1296-1298 IN denotes of
T24175 1290-1295 VB denotes shown
T24174 1287-1289 VB denotes is
T24173 1278-1286 NN denotes analysis
T24172 1265-1277 NN denotes footprinting
T24171 1258-1264 NN denotes DNaseI
T24170 1245-1257 JJ denotes Quantitative
T24169 1236-1243 NN denotes binding
T24168 1228-1235 NN denotes p50/p65
T24167 1216-1227 JJ denotes recombinant
T24166 1206-1215 VB denotes abrogates
T24165 1194-1205 RB denotes effectively
T24164 1188-1193 NN denotes sites
T24163 1180-1187 NN denotes binding
T24162 1174-1179 NN denotes NF-κB
T24161 1172-1173 NN denotes B
T24160 1164-1171 NN denotes subtype
T24159 1158-1163 NN denotes HIV-1
T24158 1154-1157 DT denotes the
T24157 1151-1153 IN denotes of
T24156 1140-1150 NN denotes disruption
T24155 1131-1139 JJ denotes Specific
T24154 1129-1130 -RRB- denotes )
T24153 1128-1129 NN denotes C
T24152 1127-1128 -LRB- denotes (
T24151 1121-1126 NN denotes bars.
T24150 1119-1120 DT denotes a
T24149 1114-1118 IN denotes with
T24148 1104-1113 VB denotes indicated
T24147 1100-1103 VB denotes are
T24146 1094-1099 NN denotes NFAT5
T24145 1090-1093 CC denotes and
T24144 1084-1089 NN denotes NF-κB
T24143 1081-1083 IN denotes of
T24142 1073-1080 NN denotes binding
T24141 1069-1072 DT denotes the
T24140 1066-1068 IN denotes by
T24139 1057-1065 NN denotes cleavage
T24138 1055-1056 CD denotes I
T24137 1049-1054 NN denotes DNase
T24136 1044-1048 IN denotes from
T24135 1034-1043 VB denotes protected
T24134 1030-1033 VB denotes are
T24133 1025-1029 WDT denotes that
T24132 1017-1024 NN denotes regions
T24131 1013-1016 DT denotes The
T24130 1010-1011 -RRB- denotes )
T24129 1008-1010 NN denotes ng
T24128 1004-1007 CD denotes 250
T24127 1000-1003 CC denotes and
T24126 998-999 -COMMA- denotes ,
T24125 996-998 NN denotes ng
T24124 993-995 CD denotes 50
T24123 991-992 -COMMA- denotes ,
T24122 989-991 NN denotes ng
T24121 986-988 CD denotes 10
T24120 985-986 -LRB- denotes (
T24119 979-984 NN denotes NFAT5
T24118 976-978 CC denotes or
T24117 974-975 -COMMA- denotes ,
T24116 973-974 -RRB- denotes )
T24115 971-973 NN denotes ng
T24114 967-970 CD denotes 500
T24113 963-966 CC denotes and
T24112 961-962 -COMMA- denotes ,
T24111 959-961 NN denotes ng
T24110 955-958 CD denotes 100
T24109 953-954 -COMMA- denotes ,
T24108 951-953 NN denotes ng
T24107 948-950 CD denotes 25
T24106 947-948 -LRB- denotes (
T24105 945-946 -RRB- denotes )
T24104 938-945 NN denotes p50/p65
T24103 937-938 -LRB- denotes (
T24102 931-936 NN denotes NF-κB
T24101 919-930 JJ denotes recombinant
T24100 916-918 IN denotes of
T24099 901-915 NN denotes concentrations
T24098 890-900 VB denotes increasing
T24097 886-889 CC denotes and
T24096 862-885 NN denotes HIV-1Lai/Bal-env-N5-Mut
T24095 858-861 CC denotes and
T24094 838-857 NN denotes HIV-1Lai/Bal-env-WT
T24093 833-837 IN denotes from
T24092 831-832 -RRB- denotes )
T24091 827-831 NN denotes site
T24090 821-826 NN denotes start
T24089 807-820 NN denotes transcription
T24088 803-806 DT denotes the
T24087 800-802 TO denotes to
T24086 791-799 JJ denotes relative
T24085 788-790 NN denotes nt
T24084 785-787 CD denotes +4
T24083 782-784 TO denotes to
T24082 777-781 CD denotes -262
T24081 776-777 -LRB- denotes (
T24080 766-775 NN denotes fragments
T24079 762-765 NN denotes LTR
T24078 756-761 NN denotes HIV-1
T24077 750-755 VB denotes using
T24076 744-749 VB denotes shown
T24075 741-743 VB denotes is
T24074 732-740 NN denotes analysis
T24073 719-731 NN denotes footprinting
T24072 712-718 NN denotes DNaseI
T24071 699-711 JJ denotes Quantitative
T24070 693-697 NN denotes site
T24069 685-692 NN denotes binding
T24068 679-684 NN denotes NF-κB
T24067 667-678 VB denotes overlapping
T24066 663-666 DT denotes the
T24065 660-662 TO denotes to
T24064 652-659 VB denotes binding
T24063 644-651 NN denotes p50/p65
T24062 638-643 NN denotes NF-κB
T24061 631-637 VB denotes affect
T24060 627-630 RB denotes not
T24059 622-626 VB denotes does
T24058 618-621 CC denotes but
T24057 614-617 NN denotes LTR
T24056 608-613 JJ denotes viral
T24055 604-607 DT denotes the
T24054 601-603 TO denotes to
T24053 593-600 NN denotes binding
T24052 587-592 NN denotes NFAT5
T24051 577-586 VB denotes abolishes
T24050 572-576 NN denotes site
T24049 564-571 NN denotes binding
T24048 558-563 NN denotes NFAT5
T24047 554-557 DT denotes the
T24046 551-553 IN denotes of
T24045 542-550 NN denotes mutation
T24044 533-541 JJ denotes Specific
T24043 531-532 -RRB- denotes )
T24042 530-531 NN denotes B
T24041 529-530 -LRB- denotes (
T24040 519-528 NN denotes sequence.
T24039 510-518 JJ denotes proviral
T24038 490-509 NN denotes HIV-1Lai/Bal-env–WT
T24037 486-489 DT denotes the
T24036 483-485 IN denotes of
T24035 479-482 NN denotes LTR
T24034 476-478 NN denotes 3′
T24033 472-475 DT denotes the
T24032 467-471 IN denotes into
T24031 456-466 VB denotes introduced
T24030 451-455 VB denotes were
T24029 441-450 NN denotes Mutations
T24028 431-439 NN denotes sequence
T24027 411-430 NN denotes HIV-1Lai/Bal-env-WT
T24026 407-410 DT denotes the
T24025 402-406 IN denotes with
T24024 396-401 IN denotes along
T24023 390-395 VB denotes shown
T24022 386-389 VB denotes are
T24021 384-385 -RRB- denotes )
T24020 361-384 NN denotes HIV-1Lai/Bal-env-N5-Mut
T24019 360-361 -LRB- denotes (
T24018 353-359 JJ denotes mutant
T24017 348-352 NN denotes site
T24016 340-347 NN denotes binding
T24015 334-339 NN denotes NFAT5
T24014 330-333 CC denotes and
T24013 328-329 -COMMA- denotes ,
T24276 1926-1929 CC denotes and
T24275 1924-1925 -COMMA- denotes ,
T24274 1918-1924 NN denotes II-Mut
T24273 1898-1917 NN denotes HIV-1Lai/Bal-env-κB
T24272 1896-1897 -COMMA- denotes ,
T24271 1891-1896 NN denotes I-Mut
T24270 1871-1890 NN denotes HIV-1Lai/Bal-env-κB
T24269 1869-1870 -COMMA- denotes ,
T24268 1850-1869 NN denotes HIV-1Lai/Bal-env-WT
T24267 1845-1849 IN denotes from
T24266 1842-1844 CD denotes +4
T24265 1839-1841 TO denotes to
T24264 1834-1838 CD denotes −262
T24263 1822-1833 NN denotes nucleotides
T24262 1819-1821 IN denotes of
T24261 1813-1818 VB denotes shown
T24260 1810-1812 VB denotes is
T24259 1801-1809 NN denotes analysis
T24258 1788-1800 NN denotes footprinting
T24257 1781-1787 NN denotes DNaseI
T24256 1768-1780 JJ denotes Quantitative
T24255 1760-1766 NN denotes region
T24254 1755-1759 DT denotes this
T24253 1752-1754 TO denotes to
T24252 1744-1751 NN denotes binding
T24251 1738-1743 NN denotes NFAT5
T24250 1729-1737 VB denotes enhances
T24249 1725-1728 CC denotes but
T24248 1717-1724 VB denotes inhibit
T24247 1713-1716 RB denotes not
T24246 1708-1712 VB denotes does
T24245 1703-1707 NN denotes site
T24244 1695-1702 NN denotes binding
T24243 1689-1694 NN denotes NF-κB
T24242 1687-1688 NN denotes B
T24241 1679-1686 NN denotes subtype
T24240 1673-1678 NN denotes HIV-1
T24239 1669-1672 DT denotes the
T24238 1666-1668 IN denotes of
T24237 1655-1665 NN denotes disruption
T24236 1646-1654 JJ denotes Specific
T24235 1644-1645 -RRB- denotes )
T24234 1643-1644 NN denotes D
T24233 1642-1643 -LRB- denotes (
T24232 1636-1641 NN denotes bars.
T24231 1634-1635 DT denotes a
T24230 1629-1633 IN denotes with
T24229 1619-1628 VB denotes indicated
T24012 327-328 -RRB- denotes )
T24011 319-327 NN denotes I+II-Mut
T24010 299-318 NN denotes HIV-1Lai/Bal-env-κB
T24009 297-298 -COMMA- denotes ,
T24008 291-297 NN denotes II-Mut
T24007 271-290 NN denotes HIV-1Lai/Bal-env-κB
T24006 269-270 -COMMA- denotes ,
T24005 264-269 NN denotes I-Mut
T24004 244-263 NN denotes HIV-1Lai/Bal-env-κB
T24003 243-244 -LRB- denotes (
T24002 235-242 NN denotes mutants
T24001 230-234 NN denotes site
T24000 222-229 NN denotes binding
T23999 216-221 NN denotes NF-κB
T23998 212-215 DT denotes The
T23997 205-210 NN denotes clone
T23996 195-204 JJ denotes molecular
T23995 184-194 JJ denotes infectious
T23994 182-183 -RRB- denotes )
T23993 180-182 NN denotes WT
T23992 179-180 -LRB- denotes (
T23991 174-178 NN denotes type
T23990 152-173 JJ denotes HIV-1Lai/Bal-env-wild
T23989 148-151 DT denotes the
T23988 145-147 IN denotes of
T23987 141-144 NN denotes LTR
T23986 137-140 DT denotes the
T23985 132-136 IN denotes into
T23984 121-131 VB denotes introduced
T23983 116-120 VB denotes were
T23982 106-115 NN denotes mutations
T23981 101-105 NN denotes site
T23980 93-100 NN denotes binding
T23979 87-92 NN denotes NFAT5
T23978 83-86 CC denotes and
T23977 77-82 NN denotes NF-κB
T23976 70-75 NN denotes clone
T23975 60-69 JJ denotes molecular
T23974 49-59 JJ denotes infectious
T23973 32-48 NN denotes HIV-1Lai/Bal-env
T23972 30-31 DT denotes a
T23971 25-29 IN denotes into
T23970 14-24 VB denotes introduced
T23969 4-13 NN denotes Mutations
T23968 2-3 -RRB- denotes )
T23967 1-2 NN denotes A
T23966 0-1 -LRB- denotes (
R17570 T23967 T23966 arg2Of A,(
R17571 T23968 T23966 arg3Of ),(
R17572 T23969 T23966 arg1Of Mutations,(
R17573 T23969 T23970 arg2Of Mutations,introduced
R17574 T23970 T23971 arg1Of introduced,into
R17575 T23976 T23971 arg2Of clone,into
R17576 T23976 T23972 arg1Of clone,a
R17577 T23976 T23973 arg1Of clone,HIV-1Lai/Bal-env
R17578 T23976 T23974 arg1Of clone,infectious
R17579 T23976 T23975 arg1Of clone,molecular
R17580 T23977 T23978 arg1Of NF-κB,and
R17581 T23979 T23978 arg2Of NFAT5,and
R17582 T23982 T23977 arg1Of mutations,NF-κB
R17583 T23982 T23979 arg1Of mutations,NFAT5
R17584 T23982 T23980 arg1Of mutations,binding
R17585 T23982 T23981 arg1Of mutations,site
R17586 T23982 T23983 arg1Of mutations,were
R17587 T23982 T23984 arg2Of mutations,introduced
R17588 T23984 T23983 arg2Of introduced,were
R17589 T23984 T23985 arg1Of introduced,into
R17590 T23987 T23985 arg2Of LTR,into
R17591 T23987 T23986 arg1Of LTR,the
R17592 T23987 T23988 arg1Of LTR,of
R17593 T23993 T23992 arg2Of WT,(
R17594 T23994 T23992 arg3Of ),(
R17595 T23997 T23988 arg2Of clone,of
R17596 T23997 T23989 arg1Of clone,the
R17597 T23997 T23990 arg1Of clone,HIV-1Lai/Bal-env-wild
R17598 T23997 T23991 arg1Of clone,type
R17599 T23997 T23992 arg1Of clone,(
R17600 T23997 T23995 arg1Of clone,infectious
R17601 T23997 T23996 arg1Of clone,molecular
R17602 T24002 T23998 arg1Of mutants,The
R17603 T24002 T23999 arg1Of mutants,NF-κB
R17604 T24002 T24000 arg1Of mutants,binding
R17605 T24002 T24001 arg1Of mutants,site
R17606 T24002 T24003 arg1Of mutants,(
R17607 T24002 T24014 arg1Of mutants,and
R17608 T24005 T24003 arg2Of I-Mut,(
R17609 T24005 T24004 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R17610 T24005 T24006 arg1Of I-Mut,","
R17611 T24005 T24009 arg1Of I-Mut,","
R17612 T24008 T24006 arg2Of II-Mut,","
R17613 T24008 T24007 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R17614 T24011 T24009 arg2Of I+II-Mut,","
R17615 T24011 T24010 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R17616 T24012 T24003 arg3Of ),(
R17617 T24014 T24013 arg1Of and,","
R17618 T24014 T24022 arg1Of and,are
R17619 T24014 T24023 arg2Of and,shown
R17620 T24017 T24014 arg2Of site,and
R17621 T24017 T24015 arg1Of site,NFAT5
R17622 T24017 T24016 arg1Of site,binding
R17623 T24017 T24018 arg1Of site,mutant
R17624 T24017 T24019 arg1Of site,(
R17625 T24020 T24019 arg2Of HIV-1Lai/Bal-env-N5-Mut,(
R17626 T24021 T24019 arg3Of ),(
R17627 T24023 T24022 arg2Of shown,are
R17628 T24023 T24024 arg1Of shown,along
R17629 T24024 T24025 arg1Of along,with
R17630 T24028 T24025 arg2Of sequence,with
R17631 T24028 T24026 arg1Of sequence,the
R17632 T24028 T24027 arg1Of sequence,HIV-1Lai/Bal-env-WT
R17633 T24029 T24030 arg1Of Mutations,were
R17634 T24029 T24031 arg2Of Mutations,introduced
R17635 T24031 T24030 arg2Of introduced,were
R17636 T24031 T24032 arg1Of introduced,into
R17637 T24035 T24032 arg2Of LTR,into
R17638 T24035 T24033 arg1Of LTR,the
R17639 T24035 T24034 arg1Of LTR,3′
R17640 T24035 T24036 arg1Of LTR,of
R17641 T24040 T24036 arg2Of sequence.,of
R17642 T24040 T24037 arg1Of sequence.,the
R17643 T24040 T24038 arg1Of sequence.,HIV-1Lai/Bal-env–WT
R17644 T24040 T24039 arg1Of sequence.,proviral
R17645 T24042 T24041 arg2Of B,(
R17646 T24043 T24041 arg3Of ),(
R17647 T24045 T24041 arg1Of mutation,(
R17648 T24045 T24044 arg1Of mutation,Specific
R17649 T24045 T24046 arg1Of mutation,of
R17650 T24045 T24051 arg1Of mutation,abolishes
R17651 T24045 T24059 arg1Of mutation,does
R17652 T24045 T24061 arg1Of mutation,affect
R17653 T24050 T24046 arg2Of site,of
R17654 T24050 T24047 arg1Of site,the
R17655 T24050 T24048 arg1Of site,NFAT5
R17656 T24050 T24049 arg1Of site,binding
R17657 T24051 T24058 arg1Of abolishes,but
R17658 T24053 T24051 arg2Of binding,abolishes
R17659 T24053 T24052 arg1Of binding,NFAT5
R17660 T24053 T24054 arg1Of binding,to
R17661 T24057 T24054 arg2Of LTR,to
R17662 T24057 T24055 arg1Of LTR,the
R17663 T24057 T24056 arg1Of LTR,viral
R17664 T24058 T24030 modOf but,were
R17665 T24061 T24058 arg2Of affect,but
R17666 T24061 T24059 arg2Of affect,does
R17667 T24061 T24060 arg1Of affect,not
R17668 T24063 T24061 arg2Of p50/p65,affect
R17669 T24063 T24062 arg1Of p50/p65,NF-κB
R17670 T24063 T24064 arg1Of p50/p65,binding
R17671 T24064 T24065 arg1Of binding,to
R17672 T24070 T24065 arg2Of site,to
R17673 T24070 T24066 arg1Of site,the
R17674 T24070 T24067 arg1Of site,overlapping
R17675 T24070 T24068 arg1Of site,NF-κB
R17676 T24070 T24069 arg1Of site,binding
R17677 T24074 T24071 arg1Of analysis,Quantitative
R17678 T24074 T24072 arg1Of analysis,DNaseI
R17679 T24074 T24073 arg1Of analysis,footprinting
R17680 T24074 T24075 arg1Of analysis,is
R17681 T24074 T24076 arg2Of analysis,shown
R17682 T24074 T24077 arg1Of analysis,using
R17683 T24076 T24075 arg2Of shown,is
R17684 T24077 T24076 arg3Of using,shown
R17685 T24080 T24078 arg1Of fragments,HIV-1
R17686 T24080 T24079 arg1Of fragments,LTR
R17687 T24080 T24081 arg1Of fragments,(
R17688 T24080 T24093 arg1Of fragments,from
R17689 T24080 T24097 arg1Of fragments,and
R17690 T24082 T24083 arg1Of -262,to
R17691 T24084 T24083 arg2Of +4,to
R17692 T24085 T24081 arg2Of nt,(
R17693 T24085 T24082 arg1Of nt,-262
R17694 T24085 T24086 arg1Of nt,relative
R17695 T24086 T24087 arg1Of relative,to
R17696 T24091 T24087 arg2Of site,to
R17697 T24091 T24088 arg1Of site,the
R17698 T24091 T24089 arg1Of site,transcription
R17699 T24091 T24090 arg1Of site,start
R17700 T24092 T24081 arg3Of ),(
R17701 T24094 T24095 arg1Of HIV-1Lai/Bal-env-WT,and
R17702 T24095 T24093 arg2Of and,from
R17703 T24096 T24095 arg2Of HIV-1Lai/Bal-env-N5-Mut,and
R17704 T24097 T24077 arg2Of and,using
R17705 T24099 T24098 arg1Of concentrations,increasing
R17706 T24099 T24100 arg1Of concentrations,of
R17707 T24099 T24106 arg1Of concentrations,(
R17708 T24099 T24118 arg1Of concentrations,or
R17709 T24102 T24100 arg2Of NF-κB,of
R17710 T24102 T24101 arg1Of NF-κB,recombinant
R17711 T24102 T24103 arg1Of NF-κB,(
R17712 T24104 T24103 arg2Of p50/p65,(
R17713 T24105 T24103 arg3Of ),(
R17714 T24108 T24107 arg1Of ng,25
R17715 T24108 T24109 arg1Of ng,","
R17716 T24109 T24113 arg1Of ",",and
R17717 T24111 T24109 arg2Of ng,","
R17718 T24111 T24110 arg1Of ng,100
R17719 T24113 T24106 arg2Of and,(
R17720 T24113 T24112 arg1Of and,","
R17721 T24115 T24113 arg2Of ng,and
R17722 T24115 T24114 arg1Of ng,500
R17723 T24116 T24106 arg3Of ),(
R17724 T24118 T24097 arg2Of or,and
R17725 T24118 T24117 arg1Of or,","
R17726 T24119 T24118 arg2Of NFAT5,or
R17727 T24119 T24120 arg1Of NFAT5,(
R17728 T24122 T24121 arg1Of ng,10
R17729 T24122 T24123 arg1Of ng,","
R17730 T24123 T24127 arg1Of ",",and
R17731 T24125 T24123 arg2Of ng,","
R17732 T24125 T24124 arg1Of ng,50
R17733 T24127 T24120 arg2Of and,(
R17734 T24127 T24126 arg1Of and,","
R17735 T24129 T24127 arg2Of ng,and
R17736 T24129 T24128 arg1Of ng,250
R17737 T24130 T24120 arg3Of ),(
R17738 T24132 T24131 arg1Of regions,The
R17739 T24132 T24133 arg1Of regions,that
R17740 T24132 T24134 arg1Of regions,are
R17741 T24132 T24135 arg2Of regions,protected
R17742 T24132 T24147 arg1Of regions,are
R17743 T24132 T24148 arg2Of regions,indicated
R17744 T24135 T24134 arg2Of protected,are
R17745 T24135 T24136 arg1Of protected,from
R17746 T24135 T24140 arg1Of protected,by
R17747 T24139 T24136 arg2Of cleavage,from
R17748 T24139 T24137 arg1Of cleavage,DNase
R17749 T24139 T24138 arg1Of cleavage,I
R17750 T24142 T24140 arg2Of binding,by
R17751 T24142 T24141 arg1Of binding,the
R17752 T24142 T24143 arg1Of binding,of
R17753 T24144 T24145 arg1Of NF-κB,and
R17754 T24145 T24143 arg2Of and,of
R17755 T24146 T24145 arg2Of NFAT5,and
R17756 T24148 T24147 arg2Of indicated,are
R17757 T24148 T24149 arg1Of indicated,with
R17758 T24151 T24149 arg2Of bars.,with
R17759 T24151 T24150 arg1Of bars.,a
R17760 T24153 T24152 arg2Of C,(
R17761 T24154 T24152 arg3Of ),(
R17762 T24156 T24152 arg1Of disruption,(
R17763 T24156 T24155 arg1Of disruption,Specific
R17764 T24156 T24157 arg1Of disruption,of
R17765 T24156 T24166 arg1Of disruption,abrogates
R17766 T24164 T24157 arg2Of sites,of
R17767 T24164 T24158 arg1Of sites,the
R17768 T24164 T24159 arg1Of sites,HIV-1
R17769 T24164 T24160 arg1Of sites,subtype
R17770 T24164 T24161 arg1Of sites,B
R17771 T24164 T24162 arg1Of sites,NF-κB
R17772 T24164 T24163 arg1Of sites,binding
R17773 T24166 T24147 modOf abrogates,are
R17774 T24166 T24165 arg1Of abrogates,effectively
R17775 T24169 T24166 arg2Of binding,abrogates
R17776 T24169 T24167 arg1Of binding,recombinant
R17777 T24169 T24168 arg1Of binding,p50/p65
R17778 T24173 T24170 arg1Of analysis,Quantitative
R17779 T24173 T24171 arg1Of analysis,DNaseI
R17780 T24173 T24172 arg1Of analysis,footprinting
R17781 T24173 T24174 arg1Of analysis,is
R17782 T24173 T24175 arg2Of analysis,shown
R17783 T24175 T24174 arg2Of shown,is
R17784 T24175 T24176 arg1Of shown,of
R17785 T24177 T24178 arg1Of nucleotides,−262
R17786 T24177 T24193 arg1Of nucleotides,and
R17787 T24178 T24179 arg1Of −262,to
R17788 T24180 T24179 arg2Of +4,to
R17789 T24180 T24181 arg1Of +4,from
R17790 T24182 T24183 arg1Of HIV-1Lai/Bal-env-WT,","
R17791 T24183 T24186 arg1Of ",",","
R17792 T24185 T24183 arg2Of I-Mut,","
R17793 T24185 T24184 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R17794 T24186 T24190 arg1Of ",",and
R17795 T24188 T24186 arg2Of II-Mut,","
R17796 T24188 T24187 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R17797 T24190 T24181 arg2Of and,from
R17798 T24190 T24189 arg1Of and,","
R17799 T24192 T24190 arg2Of I+II-Mut,and
R17800 T24192 T24191 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R17801 T24193 T24176 arg2Of and,of
R17802 T24195 T24193 arg2Of concentrations,and
R17803 T24195 T24194 arg1Of concentrations,increasing
R17804 T24195 T24196 arg1Of concentrations,of
R17805 T24195 T24202 arg1Of concentrations,(
R17806 T24198 T24196 arg2Of NF-κB,of
R17807 T24198 T24197 arg1Of NF-κB,recombinant
R17808 T24198 T24199 arg1Of NF-κB,(
R17809 T24200 T24199 arg2Of p50/p65,(
R17810 T24201 T24199 arg3Of ),(
R17811 T24204 T24203 arg1Of ng,25
R17812 T24204 T24205 arg1Of ng,","
R17813 T24205 T24209 arg1Of ",",and
R17814 T24207 T24205 arg2Of ng,","
R17815 T24207 T24206 arg1Of ng,100
R17816 T24209 T24202 arg2Of and,(
R17817 T24209 T24208 arg1Of and,","
R17818 T24211 T24209 arg2Of ng,and
R17819 T24211 T24210 arg1Of ng,500
R17820 T24212 T24202 arg3Of ),(
R17821 T24214 T24213 arg1Of regions,The
R17822 T24214 T24215 arg1Of regions,that
R17823 T24214 T24216 arg1Of regions,are
R17824 T24214 T24217 arg2Of regions,protected
R17825 T24214 T24228 arg1Of regions,are
R17826 T24214 T24229 arg2Of regions,indicated
R17827 T24214 T24250 arg1Of regions,enhances
R17828 T24217 T24216 arg2Of protected,are
R17829 T24217 T24218 arg1Of protected,from
R17830 T24217 T24222 arg1Of protected,by
R17831 T24221 T24218 arg2Of cleavage,from
R17832 T24221 T24219 arg1Of cleavage,DNase
R17833 T24221 T24220 arg1Of cleavage,I
R17834 T24224 T24222 arg2Of binding,by
R17835 T24224 T24223 arg1Of binding,the
R17836 T24224 T24225 arg1Of binding,of
R17837 T24227 T24225 arg2Of NF-κB,of
R17838 T24227 T24226 arg1Of NF-κB,recombinant
R17839 T24229 T24228 arg2Of indicated,are
R17840 T24229 T24230 arg1Of indicated,with
R17841 T24229 T24249 arg1Of indicated,but
R17842 T24232 T24230 arg2Of bars.,with
R17843 T24232 T24231 arg1Of bars.,a
R17844 T24232 T24233 arg1Of bars.,(
R17845 T24232 T24248 arg2Of bars.,inhibit
R17846 T24234 T24233 arg2Of D,(
R17847 T24235 T24233 arg3Of ),(
R17848 T24237 T24236 arg1Of disruption,Specific
R17849 T24237 T24238 arg1Of disruption,of
R17850 T24237 T24246 arg1Of disruption,does
R17851 T24237 T24248 arg1Of disruption,inhibit
R17852 T24245 T24238 arg2Of site,of
R17853 T24245 T24239 arg1Of site,the
R17854 T24245 T24240 arg1Of site,HIV-1
R17855 T24245 T24241 arg1Of site,subtype
R17856 T24245 T24242 arg1Of site,B
R17857 T24245 T24243 arg1Of site,NF-κB
R17858 T24245 T24244 arg1Of site,binding
R17859 T24248 T24246 arg2Of inhibit,does
R17860 T24248 T24247 arg1Of inhibit,not
R17861 T24250 T24249 arg2Of enhances,but
R17862 T24252 T24250 arg2Of binding,enhances
R17863 T24252 T24251 arg1Of binding,NFAT5
R17864 T24252 T24253 arg1Of binding,to
R17865 T24255 T24253 arg2Of region,to
R17866 T24255 T24254 arg1Of region,this
R17867 T24259 T24256 arg1Of analysis,Quantitative
R17868 T24259 T24257 arg1Of analysis,DNaseI
R17869 T24259 T24258 arg1Of analysis,footprinting
R17870 T24259 T24260 arg1Of analysis,is
R17871 T24259 T24261 arg2Of analysis,shown
R17872 T24261 T24260 arg2Of shown,is
R17873 T24261 T24262 arg1Of shown,of
R17874 T24263 T24264 arg1Of nucleotides,−262
R17875 T24263 T24279 arg1Of nucleotides,and
R17876 T24264 T24265 arg1Of −262,to
R17877 T24266 T24265 arg2Of +4,to
R17878 T24266 T24267 arg1Of +4,from
R17879 T24268 T24269 arg1Of HIV-1Lai/Bal-env-WT,","
R17880 T24269 T24272 arg1Of ",",","
R17881 T24271 T24269 arg2Of I-Mut,","
R17882 T24271 T24270 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R17883 T24272 T24276 arg1Of ",",and
R17884 T24274 T24272 arg2Of II-Mut,","
R17885 T24274 T24273 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R17886 T24276 T24267 arg2Of and,from
R17887 T24276 T24275 arg1Of and,","
R17888 T24278 T24276 arg2Of I+II-Mut,and
R17889 T24278 T24277 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R17890 T24279 T24262 arg2Of and,of
R17891 T24281 T24279 arg2Of concentrations,and
R17892 T24281 T24280 arg1Of concentrations,increasing
R17893 T24281 T24282 arg1Of concentrations,of
R17894 T24281 T24285 arg1Of concentrations,(
R17895 T24284 T24282 arg2Of NFAT5,of
R17896 T24284 T24283 arg1Of NFAT5,recombinant
R17897 T24287 T24286 arg1Of ng,10
R17898 T24287 T24288 arg1Of ng,","
R17899 T24288 T24292 arg1Of ",",and
R17900 T24290 T24288 arg2Of ng,","
R17901 T24290 T24289 arg1Of ng,50
R17902 T24292 T24285 arg2Of and,(
R17903 T24292 T24291 arg1Of and,","
R17904 T24294 T24292 arg2Of ng,and
R17905 T24294 T24293 arg1Of ng,250
R17906 T24295 T24285 arg3Of ),(
R17907 T24297 T24296 arg1Of regions,The
R17908 T24297 T24298 arg1Of regions,that
R17909 T24297 T24299 arg1Of regions,are
R17910 T24297 T24300 arg2Of regions,protected
R17911 T24297 T24311 arg1Of regions,are
R17912 T24297 T24312 arg2Of regions,indicated
R17913 T24300 T24299 arg2Of protected,are
R17914 T24300 T24301 arg1Of protected,from
R17915 T24300 T24305 arg1Of protected,by
R17916 T24304 T24301 arg2Of cleavage,from
R17917 T24304 T24302 arg1Of cleavage,DNase
R17918 T24304 T24303 arg1Of cleavage,I
R17919 T24307 T24305 arg2Of binding,by
R17920 T24307 T24306 arg1Of binding,the
R17921 T24307 T24308 arg1Of binding,of
R17922 T24310 T24308 arg2Of NFAT5,of
R17923 T24310 T24309 arg1Of NFAT5,recombinant
R17924 T24312 T24311 arg2Of indicated,are
R17925 T24312 T24313 arg1Of indicated,with
R17926 T24315 T24313 arg2Of bars,with
R17927 T24315 T24314 arg1Of bars,a

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23857 2121-2126 Protein denotes NFAT5
T23856 2074-2081 Protein denotes DNase I
T23855 2004-2009 Protein denotes NFAT5
T23854 1943-1946 Protein denotes env
T23853 1911-1914 Protein denotes env
T23852 1884-1887 Protein denotes env
T23851 1863-1866 Protein denotes env
T23850 1781-1787 Protein denotes DNaseI
T23849 1738-1743 Protein denotes NFAT5
T23848 1562-1569 Protein denotes DNase I
T23847 1492-1495 Protein denotes p65
T23846 1488-1491 Protein denotes p50
T23845 1420-1423 Protein denotes env
T23844 1388-1391 Protein denotes env
T23843 1361-1364 Protein denotes env
T23842 1340-1343 Protein denotes env
T23841 1258-1264 Protein denotes DNaseI
T23840 1232-1235 Protein denotes p65
T23839 1228-1231 Protein denotes p50
T23838 1094-1099 Protein denotes NFAT5
T23837 1049-1056 Protein denotes DNase I
T23836 979-984 Protein denotes NFAT5
T23835 942-945 Protein denotes p65
T23834 938-941 Protein denotes p50
T23833 875-878 Protein denotes env
T23832 851-854 Protein denotes env
T23831 712-718 Protein denotes DNaseI
T23830 648-651 Protein denotes p65
T23829 644-647 Protein denotes p50
T23828 587-592 Protein denotes NFAT5
T23827 503-506 Protein denotes env
T23826 424-427 Protein denotes env
T23825 374-377 Protein denotes env
T23824 312-315 Protein denotes env
T23823 284-287 Protein denotes env
T23822 257-260 Protein denotes env
T23821 165-168 Protein denotes env
T23820 45-48 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24347 1488-1491 http://www.uniprot.org/uniprot/P19838 denotes p50
T24346 1228-1231 http://www.uniprot.org/uniprot/P19838 denotes p50
T24345 938-941 http://www.uniprot.org/uniprot/P19838 denotes p50
T24344 644-647 http://www.uniprot.org/uniprot/P19838 denotes p50
T24343 1943-1946 http://www.uniprot.org/uniprot/P04578 denotes env
T24342 1911-1914 http://www.uniprot.org/uniprot/P04578 denotes env
T24341 1884-1887 http://www.uniprot.org/uniprot/P04578 denotes env
T24340 1863-1866 http://www.uniprot.org/uniprot/P04578 denotes env
T24339 1420-1423 http://www.uniprot.org/uniprot/P04578 denotes env
T24338 1388-1391 http://www.uniprot.org/uniprot/P04578 denotes env
T24337 1361-1364 http://www.uniprot.org/uniprot/P04578 denotes env
T24336 1340-1343 http://www.uniprot.org/uniprot/P04578 denotes env
T24335 875-878 http://www.uniprot.org/uniprot/P04578 denotes env
T24334 851-854 http://www.uniprot.org/uniprot/P04578 denotes env
T24333 503-506 http://www.uniprot.org/uniprot/P04578 denotes env
T24332 424-427 http://www.uniprot.org/uniprot/P04578 denotes env
T24331 374-377 http://www.uniprot.org/uniprot/P04578 denotes env
T24330 312-315 http://www.uniprot.org/uniprot/P04578 denotes env
T24329 284-287 http://www.uniprot.org/uniprot/P04578 denotes env
T24328 257-260 http://www.uniprot.org/uniprot/P04578 denotes env
T24327 165-168 http://www.uniprot.org/uniprot/P04578 denotes env
T24326 45-48 http://www.uniprot.org/uniprot/P04578 denotes env
T24325 2121-2126 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24324 2004-2009 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24323 1738-1743 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24322 1094-1099 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24321 979-984 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24320 587-592 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24319 558-563 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24318 334-339 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24317 87-92 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24355 1492-1495 http://www.uniprot.org/uniprot/P21579 denotes p65
T24354 1232-1235 http://www.uniprot.org/uniprot/P21579 denotes p65
T24353 942-945 http://www.uniprot.org/uniprot/P21579 denotes p65
T24352 648-651 http://www.uniprot.org/uniprot/P21579 denotes p65
T24351 1492-1495 http://www.uniprot.org/uniprot/Q04206 denotes p65
T24350 1232-1235 http://www.uniprot.org/uniprot/Q04206 denotes p65
T24349 942-945 http://www.uniprot.org/uniprot/Q04206 denotes p65
T24348 648-651 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T23858 807-820 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T23874 1073-1089 http://purl.obolibrary.org/obo/GO_0051059 denotes binding of NF-κB
T23873 2098-2105 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23872 1744-1751 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23871 1695-1702 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23870 1586-1593 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23869 1236-1243 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23868 1180-1187 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23867 1073-1080 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23866 685-692 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23865 652-659 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23864 593-600 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23863 564-571 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23862 340-347 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23861 222-229 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23860 93-100 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T23771 2038-2153 Sentence denotes The regions that are protected from DNase I cleavage by the binding of recombinant NFAT5 are indicated with a bars.
T23770 1768-2037 Sentence denotes Quantitative DNaseI footprinting analysis is shown of nucleotides −262 to +4 from HIV-1Lai/Bal-env-WT, HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, and HIV-1Lai/Bal-env-κB I+II-Mut and increasing concentrations of recombinant NFAT5 (10 ng, 50 ng, and 250 ng).
T23769 1526-1767 Sentence denotes The regions that are protected from DNase I cleavage by the binding of recombinant NF-κB are indicated with a bars. (D) Specific disruption of the HIV-1 subtype B NF-κB binding site does not inhibit but enhances NFAT5 binding to this region.
T23768 1245-1525 Sentence denotes Quantitative DNaseI footprinting analysis is shown of nucleotides −262 to +4 from HIV-1Lai/Bal-env-WT, HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, and HIV-1Lai/Bal-env-κB I+II-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng).
T23767 1013-1244 Sentence denotes The regions that are protected from DNase I cleavage by the binding of NF-κB and NFAT5 are indicated with a bars. (C) Specific disruption of the HIV-1 subtype B NF-κB binding sites effectively abrogates recombinant p50/p65 binding.
T23766 699-1012 Sentence denotes Quantitative DNaseI footprinting analysis is shown using HIV-1 LTR fragments (-262 to +4 nt relative to the transcription start site) from HIV-1Lai/Bal-env-WT and HIV-1Lai/Bal-env-N5-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng), or NFAT5 (10 ng, 50 ng, and 250 ng).
T23765 441-698 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site.
T23764 212-440 Sentence denotes The NF-κB binding site mutants (HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut), and NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut) are shown along with the HIV-1Lai/Bal-env-WT sequence.
T23763 77-211 Sentence denotes NF-κB and NFAT5 binding site mutations were introduced into the LTR of the HIV-1Lai/Bal-env-wild type (WT) infectious molecular clone.
T23762 0-76 Sentence denotes (A) Mutations introduced into a HIV-1Lai/Bal-env infectious molecular clone.
T173 0-76 Sentence denotes (A) Mutations introduced into a HIV-1Lai/Bal-env infectious molecular clone.
T174 77-211 Sentence denotes NF-κB and NFAT5 binding site mutations were introduced into the LTR of the HIV-1Lai/Bal-env-wild type (WT) infectious molecular clone.
T175 212-440 Sentence denotes The NF-κB binding site mutants (HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut), and NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut) are shown along with the HIV-1Lai/Bal-env-WT sequence.
T176 441-698 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site.
T177 699-1012 Sentence denotes Quantitative DNaseI footprinting analysis is shown using HIV-1 LTR fragments (-262 to +4 nt relative to the transcription start site) from HIV-1Lai/Bal-env-WT and HIV-1Lai/Bal-env-N5-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng), or NFAT5 (10 ng, 50 ng, and 250 ng).
T178 1013-1244 Sentence denotes The regions that are protected from DNase I cleavage by the binding of NF-κB and NFAT5 are indicated with a bars. (C) Specific disruption of the HIV-1 subtype B NF-κB binding sites effectively abrogates recombinant p50/p65 binding.
T179 1245-1525 Sentence denotes Quantitative DNaseI footprinting analysis is shown of nucleotides −262 to +4 from HIV-1Lai/Bal-env-WT, HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, and HIV-1Lai/Bal-env-κB I+II-Mut and increasing concentrations of recombinant NF-κB (p50/p65) (25 ng, 100 ng, and 500 ng).
T180 1526-1767 Sentence denotes The regions that are protected from DNase I cleavage by the binding of recombinant NF-κB are indicated with a bars. (D) Specific disruption of the HIV-1 subtype B NF-κB binding site does not inhibit but enhances NFAT5 binding to this region.
T181 1768-2037 Sentence denotes Quantitative DNaseI footprinting analysis is shown of nucleotides −262 to +4 from HIV-1Lai/Bal-env-WT, HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, and HIV-1Lai/Bal-env-κB I+II-Mut and increasing concentrations of recombinant NFAT5 (10 ng, 50 ng, and 250 ng).
T182 2038-2153 Sentence denotes The regions that are protected from DNase I cleavage by the binding of recombinant NFAT5 are indicated with a bars.

simple1

Id Subject Object Predicate Lexical cue
T23940 1492-1495 Protein denotes p65
T23939 1488-1491 Protein denotes p50
T23938 1420-1423 Protein denotes env
T23937 1388-1391 Protein denotes env
T23936 1361-1364 Protein denotes env
T23935 1340-1343 Protein denotes env
T23934 1258-1264 Protein denotes DNaseI
T23933 1232-1235 Protein denotes p65
T23932 1228-1231 Protein denotes p50
T23931 1094-1099 Protein denotes NFAT5
T23930 1049-1056 Protein denotes DNase I
T23929 979-984 Protein denotes NFAT5
T23928 942-945 Protein denotes p65
T23927 938-941 Protein denotes p50
T23926 875-878 Protein denotes env
T23925 851-854 Protein denotes env
T23924 712-718 Protein denotes DNaseI
T23923 648-651 Protein denotes p65
T23922 644-647 Protein denotes p50
T23921 587-592 Protein denotes NFAT5
T23920 503-506 Protein denotes env
T23919 424-427 Protein denotes env
T23918 374-377 Protein denotes env
T23917 312-315 Protein denotes env
T23916 284-287 Protein denotes env
T23915 257-260 Protein denotes env
T23914 165-168 Protein denotes env
T23913 45-48 Protein denotes env
T23950 2121-2126 Protein denotes NFAT5
T23949 2074-2081 Protein denotes DNase I
T23948 2004-2009 Protein denotes NFAT5
T23947 1943-1946 Protein denotes env
T23946 1911-1914 Protein denotes env
T23945 1884-1887 Protein denotes env
T23944 1863-1866 Protein denotes env
T23943 1781-1787 Protein denotes DNaseI
T23942 1738-1743 Protein denotes NFAT5
T23941 1562-1569 Protein denotes DNase I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25141 2082-2090 Protein_catabolism denotes cleavage
T25140 2098-2105 Binding denotes binding
T25139 1729-1737 Positive_regulation denotes enhances
T25138 1744-1751 Binding denotes binding
T25137 1570-1578 Protein_catabolism denotes cleavage
T25136 1206-1215 Negative_regulation denotes abrogates
T25135 1236-1243 Binding denotes binding
T25134 1057-1065 Protein_catabolism denotes cleavage
T25133 1073-1080 Binding denotes binding
T25132 593-600 Binding denotes binding
T25131 577-586 Negative_regulation denotes abolishes
T25130 652-659 Binding denotes binding
T25129 631-637 Regulation denotes affect
T25128 2121-2126 Protein denotes NFAT5
T25127 2074-2081 Protein denotes DNase I
T25126 2004-2009 Protein denotes NFAT5
T25125 1943-1946 Protein denotes env
T25124 1911-1914 Protein denotes env
T25123 1884-1887 Protein denotes env
T25122 1863-1866 Protein denotes env
T25121 1781-1787 Protein denotes DNaseI
T25120 1738-1743 Protein denotes NFAT5
T25119 1562-1569 Protein denotes DNase I
T25118 1492-1495 Protein denotes p65
T25117 1488-1491 Protein denotes p50
T25116 1420-1423 Protein denotes env
T25115 1388-1391 Protein denotes env
T25114 1361-1364 Protein denotes env
T25113 1340-1343 Protein denotes env
T25112 1258-1264 Protein denotes DNaseI
T25111 1232-1235 Protein denotes p65
T25110 1228-1231 Protein denotes p50
T25109 1094-1099 Protein denotes NFAT5
T25108 1049-1056 Protein denotes DNase I
T25107 979-984 Protein denotes NFAT5
T25106 942-945 Protein denotes p65
T25105 938-941 Protein denotes p50
T25104 875-878 Protein denotes env
T25103 851-854 Protein denotes env
T25102 712-718 Protein denotes DNaseI
T25101 587-592 Protein denotes NFAT5
T25100 648-651 Protein denotes p65
T25099 644-647 Protein denotes p50
T25098 503-506 Protein denotes env
T25097 424-427 Protein denotes env
T25096 374-377 Protein denotes env
T25095 312-315 Protein denotes env
T25094 284-287 Protein denotes env
T25093 257-260 Protein denotes env
T25092 165-168 Protein denotes env
T25091 45-48 Protein denotes env
R18417 T25099 T25130 themeOf p50,binding
R18418 T25100 T25129 themeOf p65,affect
R18419 T25100 T25130 themeOf p65,binding
R18420 T25101 T25132 themeOf NFAT5,binding
R18421 T25108 T25134 themeOf DNase I,cleavage
R18422 T25109 T25133 themeOf NFAT5,binding
R18423 T25110 T25135 themeOf p50,binding
R18424 T25111 T25135 themeOf p65,binding
R18425 T25119 T25137 themeOf DNase I,cleavage
R18426 T25120 T25138 themeOf NFAT5,binding
R18427 T25127 T25141 themeOf DNase I,cleavage
R18428 T25128 T25140 themeOf NFAT5,binding
R18429 T25130 T25129 themeOf binding,affect
R18430 T25130 T25129 themeOf binding,affect
R18431 T25132 T25131 themeOf binding,abolishes
R18432 T25135 T25136 themeOf binding,abrogates
R18433 T25135 T25136 themeOf binding,abrogates
R18434 T25138 T25139 themeOf binding,enhances

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24416 648-651 Protein denotes p65
T24415 644-647 Protein denotes p50
T24414 503-506 Protein denotes env
T24413 424-427 Protein denotes env
T24412 374-377 Protein denotes env
T24411 312-315 Protein denotes env
T24410 284-287 Protein denotes env
T24409 257-260 Protein denotes env
T24408 165-168 Protein denotes env
T24407 45-48 Protein denotes env
T24450 1073-1080 Binding denotes binding
T24449 1057-1065 Protein_catabolism denotes cleavage
T24448 593-600 Binding denotes binding
T24447 631-637 Regulation denotes affect
T24446 652-659 Binding denotes binding
T24445 577-586 Negative_regulation denotes abolishes
T24444 2121-2126 Protein denotes NFAT5
T24443 2074-2081 Protein denotes DNase I
T24442 2004-2009 Protein denotes NFAT5
T24441 1943-1946 Protein denotes env
T24440 1911-1914 Protein denotes env
T24439 1884-1887 Protein denotes env
T24438 1863-1866 Protein denotes env
T24437 1781-1787 Protein denotes DNaseI
T24436 1738-1743 Protein denotes NFAT5
T24435 1562-1569 Protein denotes DNase I
T24434 1492-1495 Protein denotes p65
T24433 1488-1491 Protein denotes p50
T24432 1420-1423 Protein denotes env
T24431 1388-1391 Protein denotes env
T24430 1361-1364 Protein denotes env
T24429 1340-1343 Protein denotes env
T24428 1258-1264 Protein denotes DNaseI
T24427 1232-1235 Protein denotes p65
T24426 1228-1231 Protein denotes p50
T24425 1094-1099 Protein denotes NFAT5
T24424 1049-1056 Protein denotes DNase I
T24423 979-984 Protein denotes NFAT5
T24422 942-945 Protein denotes p65
T24421 938-941 Protein denotes p50
T24420 875-878 Protein denotes env
T24419 851-854 Protein denotes env
T24418 712-718 Protein denotes DNaseI
T24417 587-592 Protein denotes NFAT5
T24500 2082-2090 Binding denotes cleavage
T24499 2098-2105 Binding denotes binding
T24498 1729-1737 Positive_regulation denotes enhances
T24497 1744-1751 Binding denotes binding
T24496 1570-1578 Protein_catabolism denotes cleavage
T24495 1236-1243 Binding denotes binding
T24494 1206-1215 Negative_regulation denotes abrogates
R17947 T24415 T24446 themeOf p50,binding
R17948 T24416 T24446 themeOf p65,binding
R17949 T24417 T24448 themeOf NFAT5,binding
R17950 T24424 T24449 themeOf DNase I,cleavage
R17951 T24425 T24450 themeOf NFAT5,binding
R17954 T24435 T24496 themeOf DNase I,cleavage
R17955 T24436 T24497 themeOf NFAT5,binding
R17956 T24443 T24500 themeOf DNase I,cleavage
R17957 T24444 T24499 themeOf NFAT5,binding
R17958 T24446 T24447 themeOf binding,affect
R17959 T24446 T24447 themeOf binding,affect
R17960 T24448 T24445 themeOf binding,abolishes
R17972 T24497 T24498 themeOf binding,enhances
R17952 T24426 T24495 themeOf p50,binding
R17953 T24427 T24495 themeOf p65,binding
R17970 T24495 T24494 themeOf binding,abrogates
R17971 T24495 T24494 themeOf binding,abrogates

DLUT931

Id Subject Object Predicate Lexical cue
T24406 2098-2105 Binding denotes binding
T24405 2082-2090 Protein_catabolism denotes cleavage
T24404 1729-1737 Positive_regulation denotes enhances
T24403 1744-1751 Binding denotes binding
T24402 1206-1215 Negative_regulation denotes abrogates
T24401 1236-1243 Binding denotes binding
T24400 1073-1080 Binding denotes binding
T24399 1057-1065 Protein_catabolism denotes cleavage
T24398 631-637 Regulation denotes affect
T24397 577-586 Negative_regulation denotes abolishes
T24396 652-659 Binding denotes binding
T24395 593-600 Binding denotes binding
T24394 340-347 Binding denotes binding
T24393 2121-2126 Protein denotes NFAT5
T24392 2074-2081 Protein denotes DNase I
T24391 2004-2009 Protein denotes NFAT5
T24390 1943-1946 Protein denotes env
T24389 1911-1914 Protein denotes env
T24388 1884-1887 Protein denotes env
T24387 1863-1866 Protein denotes env
T24386 1781-1787 Protein denotes DNaseI
T24385 1738-1743 Protein denotes NFAT5
T24384 1562-1569 Protein denotes DNase I
T24383 1492-1495 Protein denotes p65
T24382 1488-1491 Protein denotes p50
T24381 1420-1423 Protein denotes env
T24380 1388-1391 Protein denotes env
T24379 1361-1364 Protein denotes env
T24378 1340-1343 Protein denotes env
T24377 1258-1264 Protein denotes DNaseI
T24376 1232-1235 Protein denotes p65
T24375 1228-1231 Protein denotes p50
T24374 1094-1099 Protein denotes NFAT5
T24373 1049-1056 Protein denotes DNase I
T24372 979-984 Protein denotes NFAT5
T24371 942-945 Protein denotes p65
T24370 938-941 Protein denotes p50
T24369 875-878 Protein denotes env
T24368 851-854 Protein denotes env
T24367 712-718 Protein denotes DNaseI
T24366 587-592 Protein denotes NFAT5
T24365 648-651 Protein denotes p65
T24364 644-647 Protein denotes p50
T24363 503-506 Protein denotes env
T24362 424-427 Protein denotes env
T24361 374-377 Protein denotes env
T24360 312-315 Protein denotes env
T24359 284-287 Protein denotes env
T24358 257-260 Protein denotes env
T24357 165-168 Protein denotes env
T24356 45-48 Protein denotes env
R17928 T24361 T24394 themeOf env,binding
R17929 T24364 T24396 themeOf p50,binding
R17930 T24364 T24396 themeOf p50,binding
R17931 T24365 T24396 themeOf p65,binding
R17932 T24366 T24395 themeOf NFAT5,binding
R17933 T24373 T24399 themeOf DNase I,cleavage
R17934 T24374 T24400 themeOf NFAT5,binding
R17935 T24375 T24401 themeOf p50,binding
R17938 T24385 T24403 themeOf NFAT5,binding
R17939 T24392 T24405 themeOf DNase I,cleavage
R17940 T24393 T24406 themeOf NFAT5,binding
R17941 T24395 T24397 themeOf binding,abolishes
R17942 T24396 T24398 themeOf binding,affect
R17944 T24401 T24402 themeOf binding,abrogates
R17946 T24403 T24404 themeOf binding,enhances
R17936 T24375 T24401 themeOf p50,binding
R17937 T24376 T24401 themeOf p65,binding
R17943 T24396 T24398 themeOf binding,affect
R17945 T24401 T24402 themeOf binding,abrogates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25198 587-600 Binding denotes NFAT5 binding
T25196 334-385 Binding denotes NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut)
T25195 638-697 Binding denotes NF-κB p50/p65 binding to the overlapping NF-κB binding site
T25194 87-115 Binding denotes NFAT5 binding site mutations
T25193 1174-1193 Binding denotes NF-κB binding sites
T25192 1174-1243 Negative_regulation denotes NF-κB binding sites effectively abrogates recombinant p50/p65 binding
T25191 1729-1766 Positive_regulation denotes enhances NFAT5 binding to this region
T25190 551-571 Binding denotes of the NFAT5 binding
T25189 1738-1751 Binding denotes NFAT5 binding
T25188 1216-1243 Binding denotes recombinant p50/p65 binding
T25187 660-697 Entity denotes to the overlapping NF-κB binding site
T25186 1188-1193 Entity denotes sites
T25185 979-984 Protein denotes NFAT5
T25184 1822-1833 Entity denotes nucleotides
T25183 1299-1310 Entity denotes nucleotides
T25182 1084-1089 Protein denotes NF-κB
T25181 712-718 Protein denotes DNaseI
T25180 638-697 Protein denotes NF-κB p50/p65 binding to the overlapping NF-κB binding site
T25179 1049-1056 Protein denotes DNase I
T25178 2109-2126 Protein denotes recombinant NFAT5
T25177 587-592 Protein denotes NFAT5
T25176 1094-1099 Protein denotes NFAT5
T25175 334-385 Entity denotes NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut)
T25174 1492-1495 Protein denotes p65
T25173 1232-1235 Protein denotes p65
T25172 77-82 Protein denotes NF-κB
T25170 558-563 Protein denotes NFAT5
T25169 1989-2009 Protein denotes of recombinant NFAT5
T25168 1918-1925 Protein denotes II-Mut,
T25167 638-643 Protein denotes NF-κB
T25166 1228-1235 Protein denotes p50/p65
T25165 1738-1743 Protein denotes NFAT5
T25164 1466-1496 Protein denotes of recombinant NF-κB (p50/p65)
T25163 1395-1402 Protein denotes II-Mut,
T25162 1228-1235 Protein denotes p50/p65
T25161 572-576 Entity denotes site
T25160 942-945 Protein denotes p65
T25159 87-92 Protein denotes NFAT5
T25158 1488-1495 Protein denotes p50/p65
T25157 1174-1193 Protein denotes NF-κB binding sites
T25156 938-945 Protein denotes p50/p65
T25155 1597-1614 Protein denotes recombinant NF-κB
T25154 294-297 Protein denotes Mut
T25153 938-945 Protein denotes p50/p65
T25152 1781-1787 Protein denotes DNaseI
T25151 2074-2081 Protein denotes DNase I
T25150 1666-1707 Entity denotes of the HIV-1 subtype B NF-κB binding site
T25149 1488-1495 Protein denotes p50/p65
T25148 87-115 Entity denotes NFAT5 binding site mutations
T25147 1562-1569 Protein denotes DNase I
T25146 1258-1264 Protein denotes DNaseI
T25145 266-269 Protein denotes Mut
T25144 916-946 Protein denotes of recombinant NF-κB (p50/p65)
T25142 212-270 Entity denotes The NF-κB binding site mutants (HIV-1Lai/Bal-env-κB I-Mut,
R18436 T25157 T25192 causeOf NF-κB binding sites,NF-κB binding sites effectively abrogates recombinant p50/p65 binding
R18437 T25157 T25193 themeOf NF-κB binding sites,NF-κB binding sites
R18438 T25162 T25188 themeOf p50/p65,recombinant p50/p65 binding
R18439 T25165 T25189 themeOf NFAT5,NFAT5 binding
R18440 T25170 T25190 themeOf NFAT5,of the NFAT5 binding
R18441 T25175 T25196 themeOf NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut),NFAT5 binding site mutant (HIV-1Lai/Bal-env-N5-Mut)
R18442 T25177 T25198 themeOf NFAT5,NFAT5 binding
R18443 T25180 T25195 themeOf NF-κB p50/p65 binding to the overlapping NF-κB binding site,NF-κB p50/p65 binding to the overlapping NF-κB binding site
R18444 T25188 T25192 themeOf recombinant p50/p65 binding,NF-κB binding sites effectively abrogates recombinant p50/p65 binding
R18445 T25189 T25191 themeOf NFAT5 binding,enhances NFAT5 binding to this region

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25090 2152-2153 . denotes .
T25089 2148-2152 NNS denotes bars
T25088 2146-2147 DT denotes a
T25087 2141-2145 IN denotes with
T25086 2131-2140 VBN denotes indicated
T25085 2127-2130 VBP denotes are
T25084 2121-2126 NNS denotes NFAT5
T25083 2109-2120 JJ denotes recombinant
T25082 2106-2108 IN denotes of
T25081 2098-2105 JJ denotes binding
T25080 2094-2097 DT denotes the
T25079 2091-2093 IN denotes by
T25078 2082-2090 VBP denotes cleavage
T25077 2080-2081 PRP denotes I
T25076 2074-2079 NNP denotes DNase
T25075 2069-2073 IN denotes from
T25074 2059-2068 VBN denotes protected
T25073 2055-2058 VBP denotes are
T25072 2050-2054 WDT denotes that
T25071 2042-2049 NNS denotes regions
T25070 2038-2041 DT denotes The
T25069 2036-2037 . denotes .
T25068 2035-2036 -RRB- denotes )
T25067 2033-2035 NN denotes ng
T25066 2029-2032 CD denotes 250
T25065 2025-2028 CC denotes and
T25064 2023-2024 , denotes ,
T25063 2021-2023 NN denotes ng
T25062 2018-2020 CD denotes 50
T25061 2016-2017 , denotes ,
T25060 2014-2016 NN denotes ng
T25059 2011-2013 CD denotes 10
T25058 2010-2011 -LRB- denotes (
T25057 2004-2009 NNP denotes NFAT5
T25056 1992-2003 JJ denotes recombinant
T25055 1989-1991 IN denotes of
T25054 1974-1988 NNS denotes concentrations
T25053 1963-1973 VBG denotes increasing
T25052 1959-1962 CC denotes and
T25051 1955-1958 NNP denotes Mut
T25050 1954-1955 : denotes -
T25049 1950-1954 NNP denotes I+II
T25048 1939-1949 NNP denotes Bal-env-κB
T25047 1938-1939 NNP denotes /
T25046 1930-1938 NNP denotes HIV-1Lai
T25045 1926-1929 CC denotes and
T25044 1924-1925 , denotes ,
T25043 1918-1924 NNP denotes II-Mut
T25042 1907-1917 NNP denotes Bal-env-κB
T25041 1906-1907 NNP denotes /
T25040 1898-1906 NNP denotes HIV-1Lai
T25039 1896-1897 , denotes ,
T25038 1891-1896 NNP denotes I-Mut
T25037 1880-1890 NNP denotes Bal-env-κB
T25036 1879-1880 NNP denotes /
T25012 1738-1743 NNP denotes NFAT5
T25011 1729-1737 VBZ denotes enhances
T25010 1725-1728 CC denotes but
T25009 1717-1724 VB denotes inhibit
T25008 1713-1716 RB denotes not
T25007 1708-1712 VBZ denotes does
T25006 1703-1707 NN denotes site
T25005 1695-1702 JJ denotes binding
T25004 1689-1694 NNP denotes NF-κB
T25003 1687-1688 NNP denotes B
T25002 1679-1686 NN denotes subtype
T25001 1673-1678 NNP denotes HIV-1
T25000 1669-1672 DT denotes the
T24999 1666-1668 IN denotes of
T24998 1655-1665 NN denotes disruption
T24997 1646-1654 JJ denotes Specific
T24996 1644-1645 -RRB- denotes )
T24995 1643-1644 NNP denotes D
T24994 1642-1643 -LRB- denotes (
T24993 1640-1641 . denotes .
T24992 1636-1640 NNS denotes bars
T24991 1634-1635 DT denotes a
T24990 1629-1633 IN denotes with
T24989 1619-1628 VBN denotes indicated
T24988 1615-1618 VBP denotes are
T24987 1609-1614 NNP denotes NF-κB
T24986 1597-1608 JJ denotes recombinant
T24985 1594-1596 IN denotes of
T24984 1586-1593 JJ denotes binding
T24983 1582-1585 DT denotes the
T24982 1579-1581 IN denotes by
T24981 1570-1578 VBP denotes cleavage
T24980 1568-1569 PRP denotes I
T24979 1562-1567 NNP denotes DNase
T24978 1557-1561 IN denotes from
T24977 1547-1556 VBN denotes protected
T24976 1543-1546 VBP denotes are
T24975 1538-1542 WDT denotes that
T24974 1530-1537 NNS denotes regions
T24973 1526-1529 DT denotes The
T24972 1524-1525 . denotes .
T24971 1523-1524 -RRB- denotes )
T24970 1521-1523 NN denotes ng
T24969 1517-1520 CD denotes 500
T24968 1513-1516 CC denotes and
T24967 1511-1512 , denotes ,
T24966 1509-1511 NN denotes ng
T24965 1505-1508 CD denotes 100
T24964 1503-1504 , denotes ,
T24963 1501-1503 NN denotes ng
T24962 1498-1500 CD denotes 25
T24961 1497-1498 -LRB- denotes (
T24960 1495-1496 -RRB- denotes )
T24959 1488-1495 NNS denotes p50/p65
T24958 1487-1488 -LRB- denotes (
T24957 1481-1486 NNP denotes NF-κB
T24956 1469-1480 JJ denotes recombinant
T24955 1466-1468 IN denotes of
T24954 1451-1465 NNS denotes concentrations
T24953 1440-1450 VBG denotes increasing
T24952 1436-1439 CC denotes and
T24951 1432-1435 NNP denotes Mut
T24950 1431-1432 : denotes -
T24949 1427-1431 NNP denotes I+II
T24948 1416-1426 NNP denotes Bal-env-κB
T24947 1415-1416 NNP denotes /
T24946 1407-1415 NNP denotes HIV-1Lai
T24945 1403-1406 CC denotes and
T24944 1401-1402 , denotes ,
T24943 1395-1401 NNP denotes II-Mut
T24942 1384-1394 NNP denotes Bal-env-κB
T24941 1383-1384 NNP denotes /
T24940 1375-1383 NNP denotes HIV-1Lai
T24939 1373-1374 , denotes ,
T24938 1368-1373 NNP denotes I-Mut
T24937 1357-1367 NNP denotes Bal-env-κB
T24936 1356-1357 NNP denotes /
T24935 1348-1356 NNP denotes HIV-1Lai
T24934 1346-1347 , denotes ,
T24933 1336-1346 NNP denotes Bal-env-WT
T24932 1335-1336 NN denotes /
T24931 1327-1335 JJ denotes HIV-1Lai
T24930 1322-1326 IN denotes from
T24929 1319-1321 CD denotes +4
T24928 1316-1318 TO denotes to
T24927 1312-1315 CD denotes 262
T24926 1311-1312 VBP denotes
T24925 1299-1310 NNS denotes nucleotides
T24924 1296-1298 IN denotes of
T24923 1290-1295 VBN denotes shown
T24922 1287-1289 VBZ denotes is
T24921 1278-1286 NN denotes analysis
T24920 1265-1277 NN denotes footprinting
T24919 1258-1264 NNP denotes DNaseI
T24918 1245-1257 JJ denotes Quantitative
T24917 1243-1244 . denotes .
T24916 1236-1243 JJ denotes binding
T24915 1228-1235 NNS denotes p50/p65
T24914 1216-1227 JJ denotes recombinant
T24913 1206-1215 VBZ denotes abrogates
T24912 1194-1205 RB denotes effectively
T24911 1188-1193 NNS denotes sites
T24910 1180-1187 JJ denotes binding
T24909 1174-1179 NNP denotes NF-κB
T24908 1172-1173 NNP denotes B
T24907 1164-1171 NN denotes subtype
T24906 1158-1163 NNP denotes HIV-1
T24905 1154-1157 DT denotes the
T24904 1151-1153 IN denotes of
T24903 1140-1150 NN denotes disruption
T24902 1131-1139 JJ denotes Specific
T24901 1129-1130 -RRB- denotes )
T24900 1128-1129 $ denotes C
T24899 1127-1128 -LRB- denotes (
T24898 1125-1126 . denotes .
T24897 1121-1125 NNS denotes bars
T24896 1119-1120 DT denotes a
T24895 1114-1118 IN denotes with
T24894 1104-1113 VBN denotes indicated
T24893 1100-1103 VBP denotes are
T24892 1094-1099 NNP denotes NFAT5
T24891 1090-1093 CC denotes and
T24890 1084-1089 NNP denotes NF-κB
T24889 1081-1083 IN denotes of
T24888 1073-1080 JJ denotes binding
T24887 1069-1072 DT denotes the
T24886 1066-1068 IN denotes by
T24885 1057-1065 VBP denotes cleavage
T24884 1055-1056 PRP denotes I
T24883 1049-1054 NNP denotes DNase
T24882 1044-1048 IN denotes from
T24881 1034-1043 VBN denotes protected
T24880 1030-1033 VBP denotes are
T24879 1025-1029 WDT denotes that
T24878 1017-1024 NNS denotes regions
T24877 1013-1016 DT denotes The
T24876 1011-1012 . denotes .
T24875 1010-1011 -RRB- denotes )
T24874 1008-1010 NN denotes ng
T24873 1004-1007 CD denotes 250
T24872 1000-1003 CC denotes and
T24871 998-999 , denotes ,
T24870 996-998 NN denotes ng
T24869 993-995 CD denotes 50
T24868 991-992 , denotes ,
T24867 989-991 NN denotes ng
T24866 986-988 CD denotes 10
T24865 985-986 -LRB- denotes (
T24864 979-984 NNP denotes NFAT5
T24863 976-978 CC denotes or
T24862 974-975 , denotes ,
T24861 973-974 -RRB- denotes )
T24860 971-973 NN denotes ng
T24859 967-970 CD denotes 500
T24858 963-966 CC denotes and
T24857 961-962 , denotes ,
T24856 959-961 NN denotes ng
T24855 955-958 CD denotes 100
T24854 953-954 , denotes ,
T24853 951-953 NN denotes ng
T24852 948-950 CD denotes 25
T24851 947-948 -LRB- denotes (
T24850 945-946 -RRB- denotes )
T24849 938-945 NNS denotes p50/p65
T24848 937-938 -LRB- denotes (
T24847 931-936 NNP denotes NF-κB
T24846 919-930 JJ denotes recombinant
T24845 916-918 IN denotes of
T24844 901-915 NNS denotes concentrations
T24843 890-900 VBG denotes increasing
T24842 886-889 CC denotes and
T24841 871-885 NN denotes Bal-env-N5-Mut
T24840 870-871 NN denotes /
T24839 862-870 JJ denotes HIV-1Lai
T24838 858-861 CC denotes and
T24837 847-857 NN denotes Bal-env-WT
T24836 846-847 NN denotes /
T24835 838-846 JJ denotes HIV-1Lai
T24834 833-837 IN denotes from
T24833 831-832 -RRB- denotes )
T24832 827-831 NN denotes site
T24831 821-826 VB denotes start
T24830 807-820 NN denotes transcription
T24829 803-806 DT denotes the
T24828 800-802 TO denotes to
T24827 791-799 JJ denotes relative
T24826 788-790 NN denotes nt
T24825 785-787 CD denotes +4
T24824 782-784 TO denotes to
T24823 777-781 CD denotes -262
T24822 776-777 -LRB- denotes (
T24821 766-775 NNS denotes fragments
T24820 762-765 NNP denotes LTR
T24819 756-761 NNP denotes HIV-1
T24818 750-755 VBG denotes using
T24817 744-749 VBN denotes shown
T24816 741-743 VBZ denotes is
T24815 732-740 NN denotes analysis
T24814 719-731 NN denotes footprinting
T24813 712-718 NNP denotes DNaseI
T24812 699-711 JJ denotes Quantitative
T24811 697-698 . denotes .
T24810 693-697 NN denotes site
T24809 685-692 JJ denotes binding
T24808 679-684 NN denotes NF-κB
T24807 667-678 VBG denotes overlapping
T24806 663-666 DT denotes the
T24805 660-662 TO denotes to
T24804 652-659 JJ denotes binding
T24803 644-651 CD denotes p50/p65
T24802 638-643 NNP denotes NF-κB
T24801 631-637 VB denotes affect
T24800 627-630 RB denotes not
T24799 622-626 VBZ denotes does
T24798 618-621 CC denotes but
T24797 614-617 NNP denotes LTR
T24732 279-280 NNP denotes /
T24731 271-279 NNP denotes HIV-1Lai
T24730 269-270 , denotes ,
T24729 264-269 NNP denotes I-Mut
T24728 253-263 NNP denotes Bal-env-κB
T24727 252-253 NN denotes /
T24726 244-252 JJ denotes HIV-1Lai
T24725 243-244 -LRB- denotes (
T24724 235-242 NNS denotes mutants
T24723 230-234 NN denotes site
T24722 222-229 JJ denotes binding
T24721 216-221 JJ denotes NF-κB
T24720 212-215 DT denotes The
T24719 210-211 . denotes .
T24718 205-210 NN denotes clone
T24717 195-204 JJ denotes molecular
T24716 184-194 JJ denotes infectious
T24715 182-183 -RRB- denotes )
T24714 180-182 NNP denotes WT
T24713 179-180 -LRB- denotes (
T24712 174-178 NN denotes type
T24711 161-173 JJ denotes Bal-env-wild
T24710 160-161 NN denotes /
T24709 152-160 JJ denotes HIV-1Lai
T24708 148-151 DT denotes the
T24707 145-147 IN denotes of
T24706 141-144 NNP denotes LTR
T24705 137-140 DT denotes the
T24704 132-136 IN denotes into
T24703 121-131 VBN denotes introduced
T24702 116-120 VBD denotes were
T24701 106-115 NNS denotes mutations
T24700 101-105 NN denotes site
T24699 93-100 JJ denotes binding
T24698 87-92 CD denotes NFAT5
T24688 30-31 DT denotes a
T24687 25-29 IN denotes into
T24686 14-24 VBD denotes introduced
T24685 4-13 NNPS denotes Mutations
T24684 2-3 -RRB- denotes )
T24683 1-2 NNP denotes A
T24682 0-1 -LRB- denotes (
T25035 1871-1879 NNP denotes HIV-1Lai
T25034 1869-1870 , denotes ,
T25033 1859-1869 NNP denotes Bal-env-WT
T25032 1858-1859 NN denotes /
T25031 1850-1858 JJ denotes HIV-1Lai
T25030 1845-1849 IN denotes from
T25029 1842-1844 CD denotes +4
T25028 1839-1841 TO denotes to
T25027 1835-1838 CD denotes 262
T25026 1834-1835 VBP denotes
T25025 1822-1833 NNS denotes nucleotides
T25024 1819-1821 IN denotes of
T25023 1813-1818 VBN denotes shown
T25022 1810-1812 VBZ denotes is
T25021 1801-1809 NN denotes analysis
T25020 1788-1800 NN denotes footprinting
T25019 1781-1787 NNP denotes DNaseI
T25018 1768-1780 JJ denotes Quantitative
T25017 1766-1767 . denotes .
T25016 1760-1766 NN denotes region
T25015 1755-1759 DT denotes this
T25014 1752-1754 TO denotes to
T25013 1744-1751 JJ denotes binding
T24796 608-613 JJ denotes viral
T24795 604-607 DT denotes the
T24794 601-603 TO denotes to
T24793 593-600 JJ denotes binding
T24792 587-592 CD denotes NFAT5
T24791 577-586 VBZ denotes abolishes
T24790 572-576 NN denotes site
T24789 564-571 JJ denotes binding
T24777 507-509 NNP denotes WT
T24776 499-506 NN denotes Bal-env
T24775 498-499 NN denotes /
T24774 490-498 JJ denotes HIV-1Lai
T24773 486-489 DT denotes the
T24772 483-485 IN denotes of
T24771 479-482 NNP denotes LTR
T24770 477-478 NN denotes
T24769 476-477 CD denotes 3
T24768 472-475 DT denotes the
T24767 467-471 IN denotes into
T24766 456-466 VBN denotes introduced
T24765 451-455 VBD denotes were
T24764 441-450 NNS denotes Mutations
T24763 439-440 . denotes .
T24762 431-439 NN denotes sequence
T24761 420-430 JJ denotes Bal-env-WT
T24760 419-420 NN denotes /
T24759 411-419 JJ denotes HIV-1Lai
T24758 407-410 DT denotes the
T24757 402-406 IN denotes with
T24756 396-401 RP denotes along
T24755 390-395 VBN denotes shown
T24754 386-389 VBP denotes are
T24753 384-385 -RRB- denotes )
T24752 370-384 NN denotes Bal-env-N5-Mut
T24751 369-370 NN denotes /
T24750 361-369 JJ denotes HIV-1Lai
T24749 360-361 -LRB- denotes (
T24748 353-359 JJ denotes mutant
T24747 348-352 NN denotes site
T24746 340-347 JJ denotes binding
T24745 334-339 NNP denotes NFAT5
T24744 330-333 CC denotes and
T24743 328-329 , denotes ,
T24742 327-328 -RRB- denotes )
T24741 324-327 NNP denotes Mut
T24740 323-324 : denotes -
T24739 319-323 NNP denotes I+II
T24738 308-318 NNP denotes Bal-env-κB
T24737 307-308 NNP denotes /
T24736 299-307 NNP denotes HIV-1Lai
T24735 297-298 , denotes ,
T24734 291-297 NNP denotes II-Mut
T24733 280-290 NNP denotes Bal-env-κB
T24697 83-86 CC denotes and
T24696 77-82 NN denotes NF-κB
T24695 75-76 . denotes .
T24694 70-75 NN denotes clone
T24693 60-69 JJ denotes molecular
T24692 49-59 JJ denotes infectious
T24691 41-48 JJ denotes Bal-env
T24690 40-41 NN denotes /
T24689 32-40 JJ denotes HIV-1Lai
T24788 558-563 NNP denotes NFAT5
T24787 554-557 DT denotes the
T24786 551-553 IN denotes of
T24785 542-550 NN denotes mutation
T24784 533-541 JJ denotes Specific
T24783 531-532 -RRB- denotes )
T24782 530-531 NNP denotes B
T24781 529-530 -LRB- denotes (
T24780 527-528 . denotes .
T24779 519-527 NN denotes sequence
T24778 510-518 JJ denotes proviral
R18008 T24682 T24683 punct (,A
R18012 T24686 T24686 ROOT introduced,introduced
R18013 T24687 T24686 prep into,introduced
R18014 T24688 T24694 det a,clone
R18015 T24689 T24694 amod HIV-1Lai,clone
R18016 T24690 T24694 amod /,clone
R18017 T24691 T24694 amod Bal-env,clone
R18018 T24692 T24694 amod infectious,clone
R18019 T24693 T24694 amod molecular,clone
R18020 T24694 T24687 pobj clone,into
R18021 T24695 T24686 punct .,introduced
R18022 T24696 T24703 nsubjpass NF-κB,introduced
R18023 T24697 T24696 cc and,NF-κB
R18024 T24698 T24701 nummod NFAT5,mutations
R18025 T24699 T24701 amod binding,mutations
R18026 T24700 T24701 compound site,mutations
R18027 T24701 T24696 conj mutations,NF-κB
R18028 T24702 T24703 auxpass were,introduced
R18029 T24703 T24703 ROOT introduced,introduced
R18030 T24704 T24703 prep into,introduced
R18031 T24705 T24706 det the,LTR
R18032 T24706 T24704 pobj LTR,into
R18033 T24707 T24706 prep of,LTR
R18034 T24708 T24712 det the,type
R18035 T24709 T24712 amod HIV-1Lai,type
R18036 T24710 T24712 nmod /,type
R18037 T24711 T24712 amod Bal-env-wild,type
R18038 T24712 T24707 pobj type,of
R18039 T24713 T24714 punct (,WT
R18040 T24714 T24712 appos WT,type
R18041 T24715 T24706 punct ),LTR
R18042 T24716 T24718 amod infectious,clone
R18043 T24717 T24718 amod molecular,clone
R18044 T24718 T24703 dobj clone,introduced
R18045 T24719 T24703 punct .,introduced
R18046 T24720 T24724 det The,mutants
R18047 T24721 T24724 amod NF-κB,mutants
R18048 T24722 T24723 amod binding,site
R18049 T24723 T24724 compound site,mutants
R18050 T24724 T24755 nsubjpass mutants,shown
R18051 T24725 T24724 punct (,mutants
R18052 T24726 T24727 amod HIV-1Lai,/
R18053 T24727 T24729 compound /,I-Mut
R18054 T24728 T24729 compound Bal-env-κB,I-Mut
R18055 T24729 T24724 appos I-Mut,mutants
R18056 T24730 T24729 punct ",",I-Mut
R18057 T24731 T24734 compound HIV-1Lai,II-Mut
R18058 T24732 T24734 compound /,II-Mut
R18059 T24733 T24734 compound Bal-env-κB,II-Mut
R18060 T24734 T24729 conj II-Mut,I-Mut
R18061 T24735 T24734 punct ",",II-Mut
R18062 T24736 T24739 compound HIV-1Lai,I+II
R18063 T24737 T24739 compound /,I+II
R18064 T24738 T24739 compound Bal-env-κB,I+II
R18065 T24739 T24741 compound I+II,Mut
R18066 T24740 T24741 punct -,Mut
R18067 T24741 T24734 appos Mut,II-Mut
R18068 T24742 T24741 punct ),Mut
R18069 T24743 T24734 punct ",",II-Mut
R18070 T24744 T24734 cc and,II-Mut
R18071 T24745 T24734 conj NFAT5,II-Mut
R18072 T24746 T24747 amod binding,site
R18073 T24747 T24734 conj site,II-Mut
R18074 T24748 T24747 amod mutant,site
R18075 T24749 T24752 punct (,Bal-env-N5-Mut
R18076 T24750 T24752 amod HIV-1Lai,Bal-env-N5-Mut
R18077 T24751 T24752 compound /,Bal-env-N5-Mut
R18078 T24752 T24748 appos Bal-env-N5-Mut,mutant
R18079 T24753 T24724 punct ),mutants
R18080 T24754 T24755 auxpass are,shown
R18081 T24755 T24755 ROOT shown,shown
R18082 T24756 T24755 prep along,shown
R18083 T24757 T24756 prep with,along
R18084 T24758 T24762 det the,sequence
R18085 T24759 T24762 amod HIV-1Lai,sequence
R18086 T24760 T24762 nmod /,sequence
R18087 T24761 T24762 amod Bal-env-WT,sequence
R18088 T24762 T24757 pobj sequence,with
R18089 T24763 T24755 punct .,shown
R18090 T24764 T24766 nsubjpass Mutations,introduced
R18091 T24765 T24766 auxpass were,introduced
R18092 T24766 T24766 ROOT introduced,introduced
R18093 T24767 T24766 prep into,introduced
R18094 T24768 T24771 det the,LTR
R18095 T24769 T24770 nummod 3,′
R18096 T24770 T24771 compound ′,LTR
R18097 T24771 T24767 pobj LTR,into
R18098 T24772 T24771 prep of,LTR
R18099 T24773 T24776 det the,Bal-env
R18100 T24774 T24776 amod HIV-1Lai,Bal-env
R18101 T24775 T24776 compound /,Bal-env
R18102 T24776 T24772 pobj Bal-env,of
R18103 T24777 T24779 nmod WT,sequence
R18104 T24778 T24779 amod proviral,sequence
R18105 T24779 T24771 appos sequence,LTR
R18106 T24780 T24766 punct .,introduced
R18107 T24781 T24782 punct (,B
R18108 T24782 T24782 ROOT B,B
R18109 T24783 T24782 punct ),B
R18110 T24784 T24785 amod Specific,mutation
R18111 T24785 T24791 nsubj mutation,abolishes
R18112 T24786 T24785 prep of,mutation
R18113 T24787 T24790 det the,site
R18114 T24788 T24790 nmod NFAT5,site
R18115 T24789 T24790 amod binding,site
R18116 T24790 T24786 pobj site,of
R18117 T24791 T24791 ROOT abolishes,abolishes
R18118 T24792 T24793 nsubj NFAT5,binding
R18119 T24793 T24791 ccomp binding,abolishes
R18120 T24794 T24793 prep to,binding
R18121 T24795 T24797 det the,LTR
R18122 T24796 T24797 amod viral,LTR
R18123 T24797 T24794 pobj LTR,to
R18124 T24798 T24793 cc but,binding
R18125 T24799 T24801 aux does,affect
R18126 T24800 T24801 neg not,affect
R18127 T24801 T24791 conj affect,abolishes
R18128 T24802 T24804 nsubj NF-κB,binding
R18129 T24803 T24802 nummod p50/p65,NF-κB
R18130 T24804 T24801 ccomp binding,affect
R18131 T24805 T24804 prep to,binding
R18132 T24806 T24810 det the,site
R18133 T24807 T24808 amod overlapping,NF-κB
R18134 T24808 T24810 amod NF-κB,site
R18135 T24809 T24810 amod binding,site
R18136 T24810 T24805 pobj site,to
R18137 T24811 T24791 punct .,abolishes
R18138 T24812 T24815 amod Quantitative,analysis
R18139 T24813 T24815 compound DNaseI,analysis
R18140 T24814 T24815 compound footprinting,analysis
R18141 T24815 T24817 nsubjpass analysis,shown
R18142 T24816 T24817 auxpass is,shown
R18143 T24817 T24817 ROOT shown,shown
R18144 T24818 T24817 advcl using,shown
R18145 T24819 T24821 compound HIV-1,fragments
R18146 T24820 T24821 compound LTR,fragments
R18147 T24821 T24818 dobj fragments,using
R18148 T24822 T24821 punct (,fragments
R18149 T24823 T24825 quantmod -262,+4
R18150 T24824 T24825 advmod to,+4
R18151 T24825 T24826 nummod +4,nt
R18152 T24826 T24821 appos nt,fragments
R18153 T24827 T24826 amod relative,nt
R18154 T24828 T24831 aux to,start
R18155 T24829 T24830 det the,transcription
R18156 T24830 T24831 nsubj transcription,start
R18157 T24831 T24818 xcomp start,using
R18158 T24832 T24831 dobj site,start
R18159 T24833 T24831 punct ),start
R18160 T24834 T24831 prep from,start
R18161 T24835 T24837 amod HIV-1Lai,Bal-env-WT
R18162 T24836 T24837 compound /,Bal-env-WT
R18163 T24837 T24834 pobj Bal-env-WT,from
R18164 T24838 T24837 cc and,Bal-env-WT
R18165 T24839 T24841 amod HIV-1Lai,Bal-env-N5-Mut
R18166 T24840 T24841 compound /,Bal-env-N5-Mut
R18167 T24841 T24837 conj Bal-env-N5-Mut,Bal-env-WT
R18168 T24842 T24841 cc and,Bal-env-N5-Mut
R18169 T24843 T24841 conj increasing,Bal-env-N5-Mut
R18170 T24844 T24843 dobj concentrations,increasing
R18171 T24845 T24844 prep of,concentrations
R18172 T24846 T24847 amod recombinant,NF-κB
R18173 T24847 T24845 pobj NF-κB,of
R18174 T24848 T24849 punct (,p50/p65
R18175 T24849 T24847 appos p50/p65,NF-κB
R18176 T24850 T24847 punct ),NF-κB
R18177 T24851 T24853 punct (,ng
R18178 T24852 T24853 nummod 25,ng
R18179 T24853 T24844 appos ng,concentrations
R18180 T24854 T24853 punct ",",ng
R18181 T24855 T24856 nummod 100,ng
R18182 T24856 T24853 conj ng,ng
R18183 T24857 T24856 punct ",",ng
R18184 T24858 T24856 cc and,ng
R18185 T24859 T24860 nummod 500,ng
R18186 T24860 T24856 conj ng,ng
R18187 T24861 T24860 punct ),ng
R18188 T24862 T24860 punct ",",ng
R18189 T24863 T24860 cc or,ng
R18190 T24864 T24860 conj NFAT5,ng
R18191 T24865 T24867 punct (,ng
R18192 T24866 T24867 nummod 10,ng
R18193 T24867 T24864 appos ng,NFAT5
R18194 T24868 T24867 punct ",",ng
R18195 T24869 T24870 nummod 50,ng
R18196 T24870 T24867 conj ng,ng
R18197 T24871 T24870 punct ",",ng
R18198 T24872 T24870 cc and,ng
R18199 T24873 T24874 nummod 250,ng
R18200 T24874 T24870 conj ng,ng
R18201 T24875 T24867 punct ),ng
R18202 T24876 T24817 punct .,shown
R18203 T24877 T24878 det The,regions
R18204 T24878 T24885 dobj regions,cleavage
R18205 T24879 T24881 nsubjpass that,protected
R18206 T24880 T24881 auxpass are,protected
R18207 T24881 T24878 relcl protected,regions
R18208 T24882 T24881 prep from,protected
R18209 T24883 T24882 pobj DNase,from
R18210 T24884 T24885 nsubj I,cleavage
R18211 T24885 T24885 ROOT cleavage,cleavage
R18212 T24886 T24885 prep by,cleavage
R18213 T24887 T24888 det the,binding
R18214 T24888 T24886 pobj binding,by
R18215 T24889 T24888 prep of,binding
R18216 T24890 T24889 pobj NF-κB,of
R18217 T24891 T24890 cc and,NF-κB
R18218 T24892 T24890 conj NFAT5,NF-κB
R18219 T24893 T24894 auxpass are,indicated
R18220 T24894 T24885 conj indicated,cleavage
R18221 T24895 T24894 prep with,indicated
R18222 T24896 T24897 det a,bars
R18223 T24897 T24895 pobj bars,with
R18224 T24898 T24885 punct .,cleavage
R18225 T24899 T24900 punct (,C
R18226 T24900 T24900 ROOT C,C
R18227 T24901 T24900 punct ),C
R18228 T24902 T24903 amod Specific,disruption
R18229 T24903 T24913 nsubj disruption,abrogates
R18230 T24904 T24903 prep of,disruption
R18231 T24905 T24909 det the,NF-κB
R18232 T24906 T24909 compound HIV-1,NF-κB
R18233 T24907 T24908 compound subtype,B
R18234 T24908 T24909 compound B,NF-κB
R18235 T24909 T24904 pobj NF-κB,of
R18236 T24910 T24911 amod binding,sites
R18237 T24911 T24913 dep sites,abrogates
R18238 T24912 T24913 advmod effectively,abrogates
R18239 T24913 T24913 ROOT abrogates,abrogates
R18240 T24914 T24915 compound recombinant,p50/p65
R18241 T24915 T24913 dobj p50/p65,abrogates
R18242 T24916 T24913 oprd binding,abrogates
R18243 T24917 T24913 punct .,abrogates
R18244 T24918 T24921 amod Quantitative,analysis
R18245 T24919 T24921 compound DNaseI,analysis
R18246 T24920 T24921 compound footprinting,analysis
R18247 T24921 T24923 nsubjpass analysis,shown
R18248 T24922 T24923 auxpass is,shown
R18249 T24923 T24923 ROOT shown,shown
R18250 T24924 T24923 prep of,shown
R18251 T24925 T24924 pobj nucleotides,of
R18252 T24926 T24923 conj −,shown
R18253 T24927 T24929 nummod 262,+4
R18254 T24928 T24929 quantmod to,+4
R18255 T24929 T24926 dobj +4,−
R18256 T24930 T24929 prep from,+4
R18257 T24931 T24933 amod HIV-1Lai,Bal-env-WT
R18258 T24932 T24933 compound /,Bal-env-WT
R18259 T24933 T24930 pobj Bal-env-WT,from
R18260 T24934 T24933 punct ",",Bal-env-WT
R18261 T24935 T24938 compound HIV-1Lai,I-Mut
R18262 T24936 T24938 compound /,I-Mut
R18263 T24937 T24938 compound Bal-env-κB,I-Mut
R18264 T24938 T24933 conj I-Mut,Bal-env-WT
R18265 T24939 T24938 punct ",",I-Mut
R18266 T24940 T24943 compound HIV-1Lai,II-Mut
R18267 T24941 T24943 compound /,II-Mut
R18268 T24942 T24943 compound Bal-env-κB,II-Mut
R18269 T24943 T24938 conj II-Mut,I-Mut
R18270 T24944 T24943 punct ",",II-Mut
R18271 T24945 T24943 cc and,II-Mut
R18272 T24946 T24949 compound HIV-1Lai,I+II
R18273 T24947 T24949 compound /,I+II
R18274 T24948 T24949 compound Bal-env-κB,I+II
R18275 T24949 T24951 compound I+II,Mut
R18276 T24950 T24951 punct -,Mut
R18277 T24951 T24943 conj Mut,II-Mut
R18278 T24952 T24951 cc and,Mut
R18279 T24953 T24951 conj increasing,Mut
R18280 T24954 T24953 dobj concentrations,increasing
R18281 T24955 T24954 prep of,concentrations
R18282 T24956 T24957 amod recombinant,NF-κB
R18283 T24957 T24955 pobj NF-κB,of
R18284 T24958 T24959 punct (,p50/p65
R18285 T24959 T24957 appos p50/p65,NF-κB
R18286 T24960 T24959 punct ),p50/p65
R18287 T24961 T24963 punct (,ng
R18288 T24962 T24963 nummod 25,ng
R18289 T24963 T24959 appos ng,p50/p65
R18290 T24964 T24963 punct ",",ng
R18291 T24965 T24966 nummod 100,ng
R18292 T24966 T24963 conj ng,ng
R18293 T24967 T24966 punct ",",ng
R18294 T24968 T24966 cc and,ng
R18295 T24969 T24970 nummod 500,ng
R18296 T24970 T24966 conj ng,ng
R18297 T24971 T24963 punct ),ng
R18298 T24972 T24923 punct .,shown
R18299 T24973 T24974 det The,regions
R18300 T24974 T24981 dobj regions,cleavage
R18301 T24975 T24977 nsubjpass that,protected
R18302 T24976 T24977 auxpass are,protected
R18303 T24977 T24974 relcl protected,regions
R18304 T24978 T24977 prep from,protected
R18305 T24979 T24978 pobj DNase,from
R18306 T24980 T24981 nsubj I,cleavage
R18307 T24981 T24981 ROOT cleavage,cleavage
R18308 T24982 T24981 prep by,cleavage
R18309 T24983 T24984 det the,binding
R18310 T24984 T24982 pobj binding,by
R18311 T24985 T24984 prep of,binding
R18312 T24986 T24987 amod recombinant,NF-κB
R18313 T24987 T24985 pobj NF-κB,of
R18314 T24988 T24989 auxpass are,indicated
R18315 T24989 T24981 conj indicated,cleavage
R18316 T24990 T24989 prep with,indicated
R18317 T24991 T24992 det a,bars
R18318 T24992 T24990 pobj bars,with
R18319 T24993 T24981 punct .,cleavage
R18320 T24994 T24995 punct (,D
R18321 T24995 T24995 ROOT D,D
R18322 T24996 T24995 punct ),D
R18323 T24997 T24998 amod Specific,disruption
R18324 T24998 T25009 nsubj disruption,inhibit
R18325 T24999 T24998 prep of,disruption
R18326 T25000 T25006 det the,site
R18327 T25001 T25004 compound HIV-1,NF-κB
R18328 T25002 T25003 compound subtype,B
R18329 T25003 T25004 compound B,NF-κB
R18330 T25004 T25006 compound NF-κB,site
R18331 T25005 T25006 amod binding,site
R18332 T25006 T24999 pobj site,of
R18333 T25007 T25009 aux does,inhibit
R18334 T25008 T25009 neg not,inhibit
R18335 T25009 T25009 ROOT inhibit,inhibit
R18336 T25010 T25009 cc but,inhibit
R18337 T25011 T25009 conj enhances,inhibit
R18338 T25012 T25013 nsubj NFAT5,binding
R18339 T25013 T25011 oprd binding,enhances
R18340 T25014 T25013 prep to,binding
R18341 T25015 T25016 det this,region
R18342 T25016 T25014 pobj region,to
R18343 T25017 T25009 punct .,inhibit
R18344 T25018 T25021 amod Quantitative,analysis
R18345 T25019 T25021 compound DNaseI,analysis
R18346 T25020 T25021 compound footprinting,analysis
R18347 T25021 T25023 nsubjpass analysis,shown
R18348 T25022 T25023 auxpass is,shown
R18349 T25023 T25023 ROOT shown,shown
R18350 T25024 T25023 prep of,shown
R18351 T25025 T25024 pobj nucleotides,of
R18352 T25026 T25023 conj −,shown
R18353 T25027 T25029 nummod 262,+4
R18354 T25028 T25029 quantmod to,+4
R18355 T25029 T25026 dobj +4,−
R18356 T25030 T25029 prep from,+4
R18357 T25031 T25033 amod HIV-1Lai,Bal-env-WT
R18358 T25032 T25033 compound /,Bal-env-WT
R18359 T25033 T25030 pobj Bal-env-WT,from
R18360 T25034 T25033 punct ",",Bal-env-WT
R18361 T25035 T25038 compound HIV-1Lai,I-Mut
R18362 T25036 T25038 compound /,I-Mut
R18363 T25037 T25038 compound Bal-env-κB,I-Mut
R18364 T25038 T25033 conj I-Mut,Bal-env-WT
R18365 T25039 T25038 punct ",",I-Mut
R18366 T25040 T25043 compound HIV-1Lai,II-Mut
R18367 T25041 T25043 compound /,II-Mut
R18368 T25042 T25043 compound Bal-env-κB,II-Mut
R18369 T25043 T25038 conj II-Mut,I-Mut
R18370 T25044 T25043 punct ",",II-Mut
R18371 T25045 T25043 cc and,II-Mut
R18372 T25046 T25049 compound HIV-1Lai,I+II
R18373 T25047 T25049 compound /,I+II
R18374 T25048 T25049 compound Bal-env-κB,I+II
R18375 T25049 T25043 conj I+II,II-Mut
R18376 T25050 T25049 punct -,I+II
R18377 T25051 T25049 conj Mut,I+II
R18378 T25052 T25026 cc and,−
R18379 T25053 T25054 amod increasing,concentrations
R18380 T25054 T25026 conj concentrations,−
R18381 T25055 T25054 prep of,concentrations
R18382 T25056 T25057 amod recombinant,NFAT5
R18383 T25057 T25055 pobj NFAT5,of
R18384 T25058 T25060 punct (,ng
R18385 T25059 T25060 nummod 10,ng
R18386 T25060 T25057 appos ng,NFAT5
R18387 T25061 T25060 punct ",",ng
R18388 T25062 T25063 nummod 50,ng
R18389 T25063 T25060 conj ng,ng
R18390 T25064 T25063 punct ",",ng
R18391 T25065 T25063 cc and,ng
R18392 T25066 T25067 nummod 250,ng
R18393 T25067 T25063 conj ng,ng
R18394 T25068 T25060 punct ),ng
R18395 T25069 T25023 punct .,shown
R18396 T25070 T25071 det The,regions
R18397 T25071 T25078 dobj regions,cleavage
R18398 T25072 T25074 nsubjpass that,protected
R18399 T25073 T25074 auxpass are,protected
R18400 T25074 T25071 relcl protected,regions
R18401 T25075 T25074 prep from,protected
R18402 T25076 T25075 pobj DNase,from
R18403 T25077 T25078 nsubj I,cleavage
R18404 T25078 T25078 ROOT cleavage,cleavage
R18405 T25079 T25078 prep by,cleavage
R18406 T25080 T25081 det the,binding
R18407 T25081 T25079 pobj binding,by
R18408 T25082 T25081 prep of,binding
R18409 T25083 T25084 amod recombinant,NFAT5
R18410 T25084 T25082 pobj NFAT5,of
R18411 T25085 T25086 auxpass are,indicated
R18412 T25086 T25078 conj indicated,cleavage
R18413 T25087 T25086 prep with,indicated
R18414 T25088 T25089 det a,bars
R18415 T25089 T25087 pobj bars,with
R18416 T25090 T25078 punct .,cleavage

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24583 2098-2105 Binding denotes binding
T24582 2121-2126 Protein denotes NFAT5
T24581 2074-2081 Protein denotes DNase I
T24580 2004-2009 Protein denotes NFAT5
T24579 1947-1958 Protein denotes κB I+II-Mut
T24578 1943-1946 Protein denotes env
T24577 1921-1924 Protein denotes Mut
T24576 1915-1920 Protein denotes κB II
T24575 1911-1914 Protein denotes env
T24574 1893-1896 Protein denotes Mut
T24573 1888-1892 Protein denotes κB I
T24572 1884-1887 Protein denotes env
T24571 1867-1869 Protein denotes WT
T24570 1863-1866 Protein denotes env
T24569 1781-1787 Protein denotes DNaseI
T24568 1729-1737 Positive_regulation denotes enhances
T24567 1744-1751 Binding denotes binding
T24566 1738-1743 Protein denotes NFAT5
T24565 1673-1694 Protein denotes HIV-1 subtype B NF-κB
T24564 1586-1593 Binding denotes binding
T24563 1597-1614 Protein denotes recombinant NF-κB
T24562 1562-1569 Protein denotes DNase I
T24561 1492-1495 Protein denotes p65
T24560 1488-1491 Protein denotes p50
T24559 1469-1486 Protein denotes recombinant NF-κB
T24558 1424-1435 Protein denotes κB I+II-Mut
T24557 1420-1423 Protein denotes env
T24556 1398-1401 Protein denotes Mut
T24555 1392-1397 Protein denotes κB II
T24554 1388-1391 Protein denotes env
T24553 1370-1373 Protein denotes Mut
T24552 1365-1369 Protein denotes κB I
T24551 1361-1364 Protein denotes env
T24543 1158-1179 Protein denotes HIV-1 subtype B NF-κB
T24542 1073-1080 Binding denotes binding
T24541 1073-1080 Binding denotes binding
T24540 1094-1099 Protein denotes NFAT5
T24539 1084-1089 Protein denotes NF-κB
T24538 1049-1056 Protein denotes DNase I
T24537 979-984 Protein denotes NFAT5
T24536 942-945 Protein denotes p65
T24535 938-941 Protein denotes p50
T24534 919-936 Protein denotes recombinant NF-κB
T24533 882-885 Protein denotes Mut
T24532 879-881 Protein denotes N5
T24531 875-878 Protein denotes env
T24530 855-857 Protein denotes WT
T24529 851-854 Protein denotes env
T24528 712-718 Protein denotes DNaseI
T24527 577-586 Negative_regulation denotes abolishes
T24526 593-600 Binding denotes binding
T24525 679-697 Protein denotes NF-κB binding site
T24524 648-651 Protein denotes p65
T24523 644-647 Protein denotes p50
T24522 638-643 Protein denotes NF-κB
T24521 587-592 Protein denotes NFAT5
T24520 558-576 Protein denotes NFAT5 binding site
T24519 381-384 Protein denotes Mut
T24518 378-380 Protein denotes N5
T24517 374-377 Protein denotes env
T24516 334-339 Protein denotes NFAT5
T24515 324-327 Protein denotes Mut
T24514 316-323 Protein denotes κB I+II
T24513 312-315 Protein denotes env
T24512 294-297 Protein denotes Mut
T24511 288-293 Protein denotes κB II
T24510 284-287 Protein denotes env
T24509 266-269 Protein denotes Mut
T24508 261-265 Protein denotes κB I
T24507 257-260 Protein denotes env
T24506 216-221 Protein denotes NF-κB
T24505 165-168 Protein denotes env
T24504 87-92 Protein denotes NFAT5
T24503 77-82 Protein denotes NF-κB
T24550 1344-1346 Protein denotes WT
T24549 1340-1343 Protein denotes env
T24548 1258-1264 Protein denotes DNaseI
T24547 1236-1243 Binding denotes binding
T24546 1140-1150 Negative_regulation denotes disruption
T24545 1232-1235 Protein denotes p65
T24544 1228-1231 Protein denotes p50
R17973 T24521 T24526 themeOf NFAT5,binding
R17974 T24526 T24527 themeOf binding,abolishes
R17975 T24539 T24541 themeOf NF-κB,binding
R17976 T24540 T24542 themeOf NFAT5,binding
R17977 T24543 T24546 themeOf HIV-1 subtype B NF-κB,disruption
R17978 T24544 T24547 themeOf p50,binding
R17979 T24563 T24564 themeOf recombinant NF-κB,binding
R17980 T24566 T24567 themeOf NFAT5,binding
R17981 T24567 T24568 themeOf binding,enhances
R17982 T24582 T24583 themeOf NFAT5,binding

testone

Id Subject Object Predicate Lexical cue
T23679 1744-1751 Binding denotes binding
T23678 1655-1665 Negative_regulation denotes disruption
T23677 1586-1593 Binding denotes binding
T23676 1236-1243 Binding denotes binding
T23675 1140-1150 Negative_regulation denotes disruption
T23674 1073-1080 Binding denotes binding
T23673 685-697 Entity denotes binding site
T23672 652-659 Binding denotes binding
T23671 631-637 Regulation denotes affect
T23670 340-347 Binding denotes binding
T23668 2121-2126 Protein denotes NFAT5
T23667 2074-2081 Protein denotes DNase I
T23666 2004-2009 Protein denotes NFAT5
T23665 1943-1946 Protein denotes env
T23664 1911-1914 Protein denotes env
T23663 1884-1887 Protein denotes env
T23662 1863-1866 Protein denotes env
T23661 1781-1787 Protein denotes DNaseI
T23660 1738-1743 Protein denotes NFAT5
T23659 1562-1569 Protein denotes DNase I
T23658 1492-1495 Protein denotes p65
T23657 1488-1491 Protein denotes p50
T23656 1420-1423 Protein denotes env
T23655 1388-1391 Protein denotes env
T23654 1361-1364 Protein denotes env
T23653 1340-1343 Protein denotes env
T23652 1258-1264 Protein denotes DNaseI
T23651 1232-1235 Protein denotes p65
T23650 1228-1231 Protein denotes p50
T23649 1094-1099 Protein denotes NFAT5
T23648 1049-1056 Protein denotes DNase I
T23647 979-984 Protein denotes NFAT5
T23646 942-945 Protein denotes p65
T23645 938-941 Protein denotes p50
T23644 875-878 Protein denotes env
T23643 851-854 Protein denotes env
T23642 712-718 Protein denotes DNaseI
T23641 648-651 Protein denotes p65
T23640 644-647 Protein denotes p50
T23639 587-592 Protein denotes NFAT5
T23638 503-506 Protein denotes env
T23637 424-427 Protein denotes env
T23636 374-377 Protein denotes env
T23635 312-315 Protein denotes env
T23634 284-287 Protein denotes env
T23633 257-260 Protein denotes env
T23632 165-168 Protein denotes env
T23631 45-48 Protein denotes env
R17525 T23640 T23672 themeOf p50,binding
R17526 T23641 T23672 themeOf p65,binding
R17527 T23648 T23674 themeOf DNase I,binding
R17528 T23649 T23674 themeOf NFAT5,binding
R17529 T23650 T23676 themeOf p50,binding
R17530 T23651 T23676 themeOf p65,binding
R17531 T23659 T23677 themeOf DNase I,binding
R17532 T23660 T23679 themeOf NFAT5,binding
R17533 T23672 T23671 themeOf binding,affect
R17534 T23673 T23672 themeOf binding site,binding

test3

Id Subject Object Predicate Lexical cue
T23760 2121-2126 Protein denotes NFAT5
T23759 2074-2081 Protein denotes DNase I
T23758 2004-2009 Protein denotes NFAT5
T23757 1943-1946 Protein denotes env
T23756 1911-1914 Protein denotes env
T23755 1884-1887 Protein denotes env
T23754 1863-1866 Protein denotes env
T23753 1781-1787 Protein denotes DNaseI
T23752 1744-1751 Binding denotes binding
T23751 1738-1743 Protein denotes NFAT5
T23750 1562-1569 Protein denotes DNase I
T23749 1492-1495 Protein denotes p65
T23748 1488-1491 Protein denotes p50
T23747 1420-1423 Protein denotes env
T23746 1388-1391 Protein denotes env
T23745 1361-1364 Protein denotes env
T23744 1340-1343 Protein denotes env
T23743 1258-1264 Protein denotes DNaseI
T23742 1236-1243 Binding denotes binding
T23741 1232-1235 Protein denotes p65
T23740 1228-1231 Protein denotes p50
T23739 1094-1099 Protein denotes NFAT5
T23738 1049-1056 Protein denotes DNase I
T23737 979-984 Protein denotes NFAT5
T23736 942-945 Protein denotes p65
T23735 938-941 Protein denotes p50
T23734 875-878 Protein denotes env
T23733 851-854 Protein denotes env
T23732 712-718 Protein denotes DNaseI
T23731 652-659 Binding denotes binding
T23730 648-651 Protein denotes p65
T23729 644-647 Protein denotes p50
T23728 631-637 Regulation denotes affect
T23727 593-600 Binding denotes binding
T23726 587-592 Protein denotes NFAT5
T23725 503-506 Protein denotes env
T23705 1420-1423 Protein denotes env
T23704 1388-1391 Protein denotes env
T23703 1361-1364 Protein denotes env
T23702 1340-1343 Protein denotes env
T23701 1258-1264 Protein denotes DNaseI
T23700 1232-1235 Protein denotes p65
T23699 1228-1231 Protein denotes p50
T23698 1094-1099 Protein denotes NFAT5
T23697 1049-1056 Protein denotes DNase I
T23696 979-984 Protein denotes NFAT5
T23695 942-945 Protein denotes p65
T23694 938-941 Protein denotes p50
T23693 875-878 Protein denotes env
T23692 851-854 Protein denotes env
T23691 712-718 Protein denotes DNaseI
T23690 648-651 Protein denotes p65
T23689 644-647 Protein denotes p50
T23688 587-592 Protein denotes NFAT5
T23687 503-506 Protein denotes env
T23686 424-427 Protein denotes env
T23685 374-377 Protein denotes env
T23684 312-315 Protein denotes env
T23683 284-287 Protein denotes env
T23682 257-260 Protein denotes env
T23681 165-168 Protein denotes env
T23680 45-48 Protein denotes env
T23724 424-427 Protein denotes env
T23723 374-377 Protein denotes env
T23722 312-315 Protein denotes env
T23721 284-287 Protein denotes env
T23720 257-260 Protein denotes env
T23719 165-168 Protein denotes env
T23718 45-48 Protein denotes env
T23717 2121-2126 Protein denotes NFAT5
T23716 2074-2081 Protein denotes DNase I
T23715 2004-2009 Protein denotes NFAT5
T23714 1943-1946 Protein denotes env
T23713 1911-1914 Protein denotes env
T23712 1884-1887 Protein denotes env
T23711 1863-1866 Protein denotes env
T23710 1781-1787 Protein denotes DNaseI
T23709 1738-1743 Protein denotes NFAT5
T23708 1562-1569 Protein denotes DNase I
T23707 1492-1495 Protein denotes p65
T23706 1488-1491 Protein denotes p50
R17535 T23726 T23727 themeOf NFAT5,binding
R17536 T23727 T23728 causeOf binding,affect
R17537 T23729 T23731 themeOf p50,binding
R17538 T23730 T23731 themeOf p65,binding
R17539 T23731 T23728 themeOf binding,affect
R17540 T23740 T23742 themeOf p50,binding
R17541 T23741 T23742 themeOf p65,binding
R17542 T23751 T23752 themeOf NFAT5,binding