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PMC:3320587 / 28316-28499 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10904 172-182 NN denotes regulation
T10903 168-171 NN denotes MTb
T10902 165-167 IN denotes on
T10901 161-164 NN denotes LTR
T10900 155-160 NN denotes HIV-1
T10899 151-154 DT denotes the
T10898 148-150 TO denotes to
T10897 140-147 NN denotes binding
T10896 134-139 NN denotes NF-κB
T10895 131-133 IN denotes of
T10894 120-130 NN denotes disruption
T10893 111-119 JJ denotes complete
T10892 108-110 IN denotes of
T10891 101-107 NN denotes impact
T10890 97-100 DT denotes the
T10889 92-96 VB denotes test
T10888 89-91 TO denotes to
T10887 83-88 NN denotes order
T10886 80-82 IN denotes in
T10885 78-79 -RRB- denotes )
T10884 70-78 NN denotes I+II-Mut
T10883 50-69 NN denotes HIV-1Lai/Bal-env-κB
T10882 49-50 -LRB- denotes (
T10881 43-48 NN denotes virus
T10880 36-42 JJ denotes mutant
T10879 31-35 NN denotes site
T10878 25-30 NN denotes NF-κB
T10877 18-24 JJ denotes double
T10876 16-17 DT denotes a
T10875 8-15 VB denotes created
T10874 3-7 RB denotes also
T10873 0-2 PRP denotes We
R8388 T10873 T10875 arg1Of We,created
R8389 T10873 T10889 arg1Of We,test
R8390 T10875 T10874 arg1Of created,also
R8391 T10875 T10886 arg1Of created,in
R8392 T10881 T10875 arg2Of virus,created
R8393 T10881 T10876 arg1Of virus,a
R8394 T10881 T10877 arg1Of virus,double
R8395 T10881 T10878 arg1Of virus,NF-κB
R8396 T10881 T10879 arg1Of virus,site
R8397 T10881 T10880 arg1Of virus,mutant
R8398 T10881 T10882 arg1Of virus,(
R8399 T10884 T10882 arg2Of I+II-Mut,(
R8400 T10884 T10883 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R8401 T10885 T10882 arg3Of ),(
R8402 T10887 T10886 arg2Of order,in
R8403 T10889 T10886 arg3Of test,in
R8404 T10889 T10888 arg1Of test,to
R8405 T10891 T10889 arg2Of impact,test
R8406 T10891 T10890 arg1Of impact,the
R8407 T10891 T10892 arg1Of impact,of
R8408 T10894 T10892 arg2Of disruption,of
R8409 T10894 T10893 arg1Of disruption,complete
R8410 T10894 T10895 arg1Of disruption,of
R8411 T10897 T10895 arg2Of binding,of
R8412 T10897 T10896 arg1Of binding,NF-κB
R8413 T10897 T10898 arg1Of binding,to
R8414 T10901 T10898 arg2Of LTR,to
R8415 T10901 T10899 arg1Of LTR,the
R8416 T10901 T10900 arg1Of LTR,HIV-1
R8417 T10901 T10902 arg1Of LTR,on
R8418 T10904 T10902 arg2Of regulation,on
R8419 T10904 T10903 arg1Of regulation,MTb

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10527 63-66 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11120 63-66 http://www.uniprot.org/uniprot/P04578 denotes env

GO-BP

Id Subject Object Predicate Lexical cue
T10549 172-182 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-MF

Id Subject Object Predicate Lexical cue
T10571 134-147 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T10559 140-147 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T10452 0-183 Sentence denotes We also created a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut) in order to test the impact of complete disruption of NF-κB binding to the HIV-1 LTR on MTb regulation.
T171 0-183 Sentence denotes We also created a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut) in order to test the impact of complete disruption of NF-κB binding to the HIV-1 LTR on MTb regulation.

simple1

Id Subject Object Predicate Lexical cue
T10617 63-66 Protein denotes env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11999 63-66 Protein denotes env

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11246 63-66 Protein denotes env

DLUT931

Id Subject Object Predicate Lexical cue
T11151 63-66 Protein denotes env

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12113 151-182 Regulation denotes the HIV-1 LTR on MTb regulation
T12058 16-79 Entity denotes a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut)
T12051 25-30 Protein denotes NF-κB
T12043 168-171 Protein denotes MTb
R9345 T12043 T12113 themeOf MTb,the HIV-1 LTR on MTb regulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11775 182-183 . denotes .
T11774 172-182 NN denotes regulation
T11773 168-171 NNP denotes MTb
T11772 165-167 IN denotes on
T11771 161-164 NNP denotes LTR
T11770 155-160 NNP denotes HIV-1
T11769 151-154 DT denotes the
T11768 148-150 TO denotes to
T11767 140-147 JJ denotes binding
T11766 134-139 JJ denotes NF-κB
T11765 131-133 IN denotes of
T11764 120-130 NN denotes disruption
T11763 111-119 JJ denotes complete
T11762 108-110 IN denotes of
T11761 101-107 NN denotes impact
T11760 97-100 DT denotes the
T11759 92-96 VB denotes test
T11758 89-91 TO denotes to
T11757 83-88 NN denotes order
T11756 80-82 IN denotes in
T11755 78-79 -RRB- denotes )
T11754 75-78 NNP denotes Mut
T11753 74-75 : denotes -
T11752 70-74 NNP denotes I+II
T11751 59-69 NNP denotes Bal-env-κB
T11750 58-59 NN denotes /
T11749 50-58 JJ denotes HIV-1Lai
T11748 49-50 -LRB- denotes (
T11747 43-48 NN denotes virus
T11746 36-42 JJ denotes mutant
T11745 31-35 NN denotes site
T11744 25-30 NN denotes NF-κB
T11743 18-24 JJ denotes double
T11742 16-17 DT denotes a
T11741 8-15 VBD denotes created
T11740 3-7 RB denotes also
T11739 0-2 PRP denotes We
R9054 T11739 T11741 nsubj We,created
R9055 T11740 T11741 advmod also,created
R9056 T11741 T11741 ROOT created,created
R9057 T11742 T11747 det a,virus
R9058 T11743 T11744 amod double,NF-κB
R9059 T11744 T11745 compound NF-κB,site
R9060 T11745 T11747 nmod site,virus
R9061 T11746 T11747 amod mutant,virus
R9062 T11747 T11741 dobj virus,created
R9063 T11748 T11756 punct (,in
R9064 T11749 T11750 amod HIV-1Lai,/
R9065 T11750 T11752 compound /,I+II
R9066 T11751 T11752 compound Bal-env-κB,I+II
R9067 T11752 T11756 nsubj I+II,in
R9068 T11753 T11754 punct -,Mut
R9069 T11754 T11752 appos Mut,I+II
R9070 T11755 T11752 punct ),I+II
R9071 T11756 T11741 prep in,created
R9072 T11757 T11756 pobj order,in
R9073 T11758 T11759 aux to,test
R9074 T11759 T11757 acl test,order
R9075 T11760 T11761 det the,impact
R9076 T11761 T11759 dobj impact,test
R9077 T11762 T11761 prep of,impact
R9078 T11763 T11764 amod complete,disruption
R9079 T11764 T11762 pobj disruption,of
R9080 T11765 T11764 prep of,disruption
R9081 T11766 T11767 amod NF-κB,binding
R9082 T11767 T11759 oprd binding,test
R9083 T11768 T11767 prep to,binding
R9084 T11769 T11771 det the,LTR
R9085 T11770 T11771 compound HIV-1,LTR
R9086 T11771 T11768 pobj LTR,to
R9087 T11772 T11771 prep on,LTR
R9088 T11773 T11774 compound MTb,regulation
R9089 T11774 T11772 pobj regulation,on
R9090 T11775 T11741 punct .,created

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11337 140-147 Binding denotes binding
T11336 140-147 Binding denotes binding
T11335 155-164 Protein denotes HIV-1 LTR
T11334 134-139 Protein denotes NF-κB
T11333 75-78 Protein denotes Mut
T11332 59-74 Protein denotes Bal-env-κB I+II
R8732 T11334 T11336 themeOf NF-κB,binding
R8733 T11334 T11337 themeOf NF-κB,binding
R8734 T11335 T11337 themeOf HIV-1 LTR,binding

testone

Id Subject Object Predicate Lexical cue
T10352 140-147 Binding denotes binding
T10351 120-130 Negative_regulation denotes disruption
T10323 63-66 Protein denotes env
R8082 T10352 T10351 themeOf binding,disruption

test3

Id Subject Object Predicate Lexical cue
T10416 63-66 Protein denotes env
T10381 63-66 Protein denotes env