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PMC:3320587 / 28042-28315 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10872 271-272 -RRB- denotes )
T10871 265-271 NN denotes II-Mut
T10870 245-264 NN denotes HIV-1Lai/Bal-env-κB
T10869 244-245 -LRB- denotes (
T10868 227-243 NN denotes HIV-1Lai/Bal-env
T10867 224-226 IN denotes in
T10866 222-223 -RRB- denotes )
T10865 220-222 CD denotes II
T10864 217-219 NN denotes κB
T10863 216-217 -LRB- denotes (
T10862 211-215 NN denotes site
T10861 205-210 NN denotes NF-κB
T10860 198-204 JJ denotes distal
T10859 193-197 RB denotes more
T10858 191-192 -COMMA- denotes ,
T10857 185-191 JJ denotes second
T10856 181-184 DT denotes the
T10855 178-180 IN denotes in
T10854 171-177 NN denotes change
T10853 168-170 NN denotes TA
T10852 165-167 TO denotes to
T10851 162-164 NN denotes GG
T10850 157-161 JJ denotes same
T10849 153-156 DT denotes the
T10848 142-152 VB denotes introduced
T10847 137-141 RB denotes also
T10846 133-136 CC denotes and
T10845 131-132 -RRB- denotes )
T10844 126-131 NN denotes I-mut
T10843 106-125 NN denotes HIV-1Lai/Bal-env-κB
T10842 105-106 -LRB- denotes (
T10841 103-104 -RRB- denotes )
T10840 101-103 NN denotes TA
T10839 100-101 -LRB- denotes (
T10838 92-99 NN denotes adenine
T10837 88-91 CC denotes and
T10836 80-87 NN denotes thymine
T10835 77-79 TO denotes to
T10834 72-76 PRP denotes them
T10833 64-71 VB denotes changed
T10832 60-63 CC denotes and
T10831 55-59 NN denotes site
T10830 53-54 NN denotes I
T10829 50-52 NN denotes κB
T10828 46-49 DT denotes the
T10827 43-45 IN denotes in
T10826 41-42 -RRB- denotes )
T10825 39-41 NN denotes GG
T10824 38-39 -LRB- denotes (
T10823 29-37 NN denotes guanines
T10822 25-28 CD denotes two
T10821 17-24 VB denotes mutated
T10820 14-16 PRP denotes we
T10819 12-13 -COMMA- denotes ,
T10818 0-12 RB denotes Specifically
R8331 T10820 T10821 arg1Of we,mutated
R8332 T10820 T10833 arg1Of we,changed
R8333 T10820 T10848 arg1Of we,introduced
R8334 T10821 T10827 arg1Of mutated,in
R8335 T10821 T10832 arg1Of mutated,and
R8336 T10823 T10821 arg2Of guanines,mutated
R8337 T10823 T10822 arg1Of guanines,two
R8338 T10823 T10824 arg1Of guanines,(
R8339 T10825 T10824 arg2Of GG,(
R8340 T10826 T10824 arg3Of ),(
R8341 T10831 T10827 arg2Of site,in
R8342 T10831 T10828 arg1Of site,the
R8343 T10831 T10829 arg1Of site,κB
R8344 T10831 T10830 arg1Of site,I
R8345 T10832 T10846 arg1Of and,and
R8346 T10833 T10832 arg2Of changed,and
R8347 T10833 T10835 arg1Of changed,to
R8348 T10834 T10833 arg2Of them,changed
R8349 T10836 T10837 arg1Of thymine,and
R8350 T10837 T10835 arg2Of and,to
R8351 T10837 T10839 arg1Of and,(
R8352 T10837 T10842 arg1Of and,(
R8353 T10838 T10837 arg2Of adenine,and
R8354 T10840 T10839 arg2Of TA,(
R8355 T10841 T10839 arg3Of ),(
R8356 T10844 T10842 arg2Of I-mut,(
R8357 T10844 T10843 arg1Of I-mut,HIV-1Lai/Bal-env-κB
R8358 T10845 T10842 arg3Of ),(
R8359 T10846 T10818 arg1Of and,Specifically
R8360 T10846 T10819 arg1Of and,","
R8361 T10848 T10846 arg2Of introduced,and
R8362 T10848 T10847 arg1Of introduced,also
R8363 T10851 T10848 arg2Of GG,introduced
R8364 T10851 T10849 arg1Of GG,the
R8365 T10851 T10850 arg1Of GG,same
R8366 T10851 T10852 arg1Of GG,to
R8367 T10854 T10852 arg2Of change,to
R8368 T10854 T10853 arg1Of change,TA
R8369 T10854 T10855 arg1Of change,in
R8370 T10854 T10867 arg1Of change,in
R8371 T10857 T10858 arg1Of second,","
R8372 T10860 T10858 arg2Of distal,","
R8373 T10860 T10859 arg1Of distal,more
R8374 T10862 T10855 arg2Of site,in
R8375 T10862 T10856 arg1Of site,the
R8376 T10862 T10857 arg1Of site,second
R8377 T10862 T10860 arg1Of site,distal
R8378 T10862 T10861 arg1Of site,NF-κB
R8379 T10862 T10863 arg1Of site,(
R8380 T10864 T10863 arg2Of κB,(
R8381 T10864 T10865 arg1Of κB,II
R8382 T10866 T10863 arg3Of ),(
R8383 T10868 T10867 arg2Of HIV-1Lai/Bal-env,in
R8384 T10868 T10869 arg1Of HIV-1Lai/Bal-env,(
R8385 T10871 T10869 arg2Of II-Mut,(
R8386 T10871 T10870 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R8387 T10872 T10869 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10526 258-261 Protein denotes env
T10525 240-243 Protein denotes env
T10524 119-122 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11119 258-261 http://www.uniprot.org/uniprot/P04578 denotes env
T11118 240-243 http://www.uniprot.org/uniprot/P04578 denotes env
T11117 119-122 http://www.uniprot.org/uniprot/P04578 denotes env

sentences

Id Subject Object Predicate Lexical cue
T10451 0-273 Sentence denotes Specifically, we mutated two guanines (GG) in the κB I site and changed them to thymine and adenine (TA) (HIV-1Lai/Bal-env-κB I-mut) and also introduced the same GG to TA change in the second, more distal NF-κB site (κB II) in HIV-1Lai/Bal-env (HIV-1Lai/Bal-env-κB II-Mut).
T170 0-273 Sentence denotes Specifically, we mutated two guanines (GG) in the κB I site and changed them to thymine and adenine (TA) (HIV-1Lai/Bal-env-κB I-mut) and also introduced the same GG to TA change in the second, more distal NF-κB site (κB II) in HIV-1Lai/Bal-env (HIV-1Lai/Bal-env-κB II-Mut).

simple1

Id Subject Object Predicate Lexical cue
T10616 258-261 Protein denotes env
T10615 240-243 Protein denotes env
T10614 119-122 Protein denotes env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11998 258-261 Protein denotes env
T11997 240-243 Protein denotes env
T11996 119-122 Protein denotes env

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11245 258-261 Protein denotes env
T11244 240-243 Protein denotes env
T11243 119-122 Protein denotes env

DLUT931

Id Subject Object Predicate Lexical cue
T11150 258-261 Protein denotes env
T11149 240-243 Protein denotes env
T11148 119-122 Protein denotes env

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12108 181-215 Entity denotes the second, more distal NF-κB site
T12102 220-222 Entity denotes II
T12099 168-170 Protein denotes TA
T12087 80-87 Entity denotes thymine
T12084 25-42 Entity denotes two guanines (GG)
T12082 53-59 Entity denotes I site
T12071 128-131 Protein denotes mut
T12069 101-103 Protein denotes TA
T12068 205-210 Protein denotes NF-κB
T12059 265-271 Protein denotes II-Mut
T12048 92-99 Entity denotes adenine

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11738 272-273 . denotes .
T11737 271-272 -RRB- denotes )
T11736 265-271 NNP denotes II-Mut
T11735 254-264 NNP denotes Bal-env-κB
T11734 253-254 NNP denotes /
T11733 245-253 NNP denotes HIV-1Lai
T11732 244-245 -LRB- denotes (
T11731 236-243 NNP denotes Bal-env
T11730 235-236 NNP denotes /
T11729 227-235 NNP denotes HIV-1Lai
T11728 224-226 IN denotes in
T11727 222-223 -RRB- denotes )
T11726 220-222 NNP denotes II
T11725 217-219 NNP denotes κB
T11724 216-217 -LRB- denotes (
T11723 211-215 NN denotes site
T11686 43-45 IN denotes in
T11685 41-42 -RRB- denotes )
T11684 39-41 NNP denotes GG
T11683 38-39 -LRB- denotes (
T11682 29-37 NNS denotes guanines
T11681 25-28 CD denotes two
T11680 17-24 VBD denotes mutated
T11679 14-16 PRP denotes we
T11678 12-13 , denotes ,
T11677 0-12 RB denotes Specifically
T11722 205-210 NN denotes NF-κB
T11721 198-204 JJ denotes distal
T11720 193-197 RBR denotes more
T11719 191-192 , denotes ,
T11718 185-191 JJ denotes second
T11717 181-184 DT denotes the
T11716 178-180 IN denotes in
T11715 171-177 NN denotes change
T11714 168-170 NNP denotes TA
T11713 165-167 TO denotes to
T11712 162-164 NNP denotes GG
T11711 157-161 JJ denotes same
T11710 153-156 DT denotes the
T11709 142-152 VBD denotes introduced
T11708 137-141 RB denotes also
T11707 133-136 CC denotes and
T11706 131-132 -RRB- denotes )
T11705 126-131 NNP denotes I-mut
T11704 115-125 NNP denotes Bal-env-κB
T11703 114-115 NN denotes /
T11702 106-114 JJ denotes HIV-1Lai
T11701 105-106 -LRB- denotes (
T11700 103-104 -RRB- denotes )
T11699 101-103 NNP denotes TA
T11698 100-101 -LRB- denotes (
T11697 92-99 VB denotes adenine
T11696 88-91 CC denotes and
T11695 80-87 VB denotes thymine
T11694 77-79 TO denotes to
T11693 72-76 PRP denotes them
T11692 64-71 VBD denotes changed
T11691 60-63 CC denotes and
T11690 55-59 NN denotes site
T11689 53-54 PRP denotes I
T11688 50-52 NN denotes κB
T11687 46-49 DT denotes the
R8992 T11677 T11680 advmod Specifically,mutated
R8993 T11678 T11680 punct ",",mutated
R8994 T11679 T11680 nsubj we,mutated
R8995 T11680 T11680 ROOT mutated,mutated
R8996 T11681 T11682 nummod two,guanines
R8997 T11682 T11680 dobj guanines,mutated
R8998 T11683 T11682 punct (,guanines
R8999 T11684 T11682 appos GG,guanines
R9000 T11685 T11682 punct ),guanines
R9001 T11686 T11680 prep in,mutated
R9002 T11687 T11688 det the,κB
R9003 T11688 T11686 pobj κB,in
R9004 T11689 T11690 nsubj I,site
R9005 T11690 T11680 conj site,mutated
R9006 T11691 T11680 cc and,mutated
R9007 T11692 T11680 conj changed,mutated
R9008 T11693 T11692 dobj them,changed
R9009 T11694 T11695 aux to,thymine
R9010 T11695 T11692 advcl thymine,changed
R9011 T11696 T11695 cc and,thymine
R9012 T11697 T11695 conj adenine,thymine
R9013 T11698 T11699 punct (,TA
R9014 T11699 T11697 dobj TA,adenine
R9015 T11700 T11695 punct ),thymine
R9016 T11701 T11705 punct (,I-mut
R9017 T11702 T11703 amod HIV-1Lai,/
R9018 T11703 T11705 compound /,I-mut
R9019 T11704 T11705 compound Bal-env-κB,I-mut
R9020 T11705 T11692 parataxis I-mut,changed
R9021 T11706 T11705 punct ),I-mut
R9022 T11707 T11692 cc and,changed
R9023 T11708 T11709 advmod also,introduced
R9024 T11709 T11692 conj introduced,changed
R9025 T11710 T11712 det the,GG
R9026 T11711 T11712 amod same,GG
R9027 T11712 T11709 dobj GG,introduced
R9028 T11713 T11709 prep to,introduced
R9029 T11714 T11715 compound TA,change
R9030 T11715 T11713 pobj change,to
R9031 T11716 T11715 prep in,change
R9032 T11717 T11718 det the,second
R9033 T11718 T11723 amod second,site
R9034 T11719 T11723 punct ",",site
R9035 T11720 T11721 advmod more,distal
R9036 T11721 T11723 amod distal,site
R9037 T11722 T11723 compound NF-κB,site
R9038 T11723 T11716 pobj site,in
R9039 T11724 T11723 punct (,site
R9040 T11725 T11726 compound κB,II
R9041 T11726 T11723 appos II,site
R9042 T11727 T11723 punct ),site
R9043 T11728 T11715 prep in,change
R9044 T11729 T11731 compound HIV-1Lai,Bal-env
R9045 T11730 T11731 compound /,Bal-env
R9046 T11731 T11728 pobj Bal-env,in
R9047 T11732 T11731 punct (,Bal-env
R9048 T11733 T11736 compound HIV-1Lai,II-Mut
R9049 T11734 T11736 compound /,II-Mut
R9050 T11735 T11736 compound Bal-env-κB,II-Mut
R9051 T11736 T11731 appos II-Mut,Bal-env
R9052 T11737 T11731 punct ),Bal-env
R9053 T11738 T11680 punct .,mutated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11324 123-127 Protein denotes κB I
T11323 119-122 Protein denotes env
T11322 50-59 Protein denotes κB I site
T11331 268-271 Protein denotes Mut
T11330 262-267 Protein denotes κB II
T11329 258-261 Protein denotes env
T11328 240-243 Protein denotes env
T11327 217-222 Protein denotes κB II
T11326 205-215 Protein denotes NF-κB site
T11325 128-131 Protein denotes mut

testone

Id Subject Object Predicate Lexical cue
T10350 171-177 Regulation denotes change
T10322 258-261 Protein denotes env
T10321 240-243 Protein denotes env
T10320 119-122 Protein denotes env

test3

Id Subject Object Predicate Lexical cue
T10415 258-261 Protein denotes env
T10414 240-243 Protein denotes env
T10413 119-122 Protein denotes env
T10380 258-261 Protein denotes env
T10379 240-243 Protein denotes env
T10378 119-122 Protein denotes env