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PMC:3320587 / 27459-28499 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10904 1029-1039 NN denotes regulation
T10903 1025-1028 NN denotes MTb
T10902 1022-1024 IN denotes on
T10901 1018-1021 NN denotes LTR
T10900 1012-1017 NN denotes HIV-1
T10899 1008-1011 DT denotes the
T10898 1005-1007 TO denotes to
T10897 997-1004 NN denotes binding
T10896 991-996 NN denotes NF-κB
T10895 988-990 IN denotes of
T10894 977-987 NN denotes disruption
T10893 968-976 JJ denotes complete
T10892 965-967 IN denotes of
T10891 958-964 NN denotes impact
T10890 954-957 DT denotes the
T10889 949-953 VB denotes test
T10888 946-948 TO denotes to
T10887 940-945 NN denotes order
T10886 937-939 IN denotes in
T10885 935-936 -RRB- denotes )
T10884 927-935 NN denotes I+II-Mut
T10883 907-926 NN denotes HIV-1Lai/Bal-env-κB
T10882 906-907 -LRB- denotes (
T10804 486-492 VB denotes shared
T10803 474-485 NN denotes NF-κB/NFAT5
T10802 470-473 DT denotes the
T10801 465-469 IN denotes into
T10800 455-464 NN denotes mutations
T10799 442-454 NN denotes substitution
T10798 431-441 VB denotes introduced
T10797 427-430 CC denotes and
T10796 422-426 NN denotes site
T10795 414-421 NN denotes binding
T10794 408-413 NN denotes NFAT5
T10793 403-407 NN denotes core
T10792 399-402 DT denotes the
T10791 396-398 IN denotes in
T10790 393-395 NN denotes TT
T10789 390-392 TO denotes to
T10788 377-389 NN denotes dinucleotide
T10787 374-376 NN denotes CC
T10786 370-373 DT denotes the
T10785 361-369 VB denotes changing
T10784 358-360 IN denotes by
T10783 356-357 -RRB- denotes )
T10782 333-356 NN denotes HIV-1Lai/Bal-env-N5-Mut
T10781 327-332 VB denotes named
T10780 326-327 -LRB- denotes (
T10779 318-325 VB denotes mutated
T10778 314-317 VB denotes was
T10777 309-313 NN denotes site
T10776 301-308 NN denotes binding
T10775 295-300 NN denotes NFAT5
T10774 291-294 DT denotes the
T10773 285-290 WDT denotes which
T10772 282-284 IN denotes in
T10771 276-281 NN denotes clone
T10770 274-275 DT denotes a
T10769 262-273 VB denotes constructed
T10768 259-261 PRP denotes we
T10767 257-258 -COMMA- denotes ,
T10766 245-257 RB denotes Specifically
T10765 242-243 -RRB- denotes )
T10764 240-242 NN denotes 3A
T10763 233-239 NN denotes Figure
T10762 232-233 -LRB- denotes (
T10761 222-231 VB denotes disrupted
T10760 215-221 RB denotes dually
T10759 212-214 CC denotes or
T10758 199-211 RB denotes individually
T10757 192-198 CC denotes either
T10756 187-191 VB denotes were
T10755 181-186 NN denotes sites
T10754 173-180 NN denotes binding
T10753 167-172 NN denotes NF-κB
T10752 163-166 CD denotes two
T10751 159-162 DT denotes the
T10750 156-158 CC denotes or
T10749 146-155 VB denotes disrupted
T10748 133-145 RB denotes specifically
T10747 129-132 VB denotes was
T10746 124-128 NN denotes site
T10745 118-123 NN denotes NFAT5
T10744 114-117 DT denotes the
T10743 107-113 CC denotes either
T10742 101-106 WRB denotes where
T10741 94-100 NN denotes clones
T10740 84-93 JJ denotes molecular
T10739 67-83 NN denotes HIV-1Lai/Bal-env
T10738 56-66 JJ denotes infectious
T10737 53-55 IN denotes of
T10736 47-52 NN denotes panel
T10735 45-46 DT denotes a
T10734 33-44 VB denotes constructed
T10733 30-32 PRP denotes we
T10732 28-29 -COMMA- denotes ,
T10731 17-28 NN denotes experiments
T10730 11-16 DT denotes these
T10729 3-10 VB denotes perform
T10728 0-2 TO denotes To
T10881 900-905 NN denotes virus
T10880 893-899 JJ denotes mutant
T10879 888-892 NN denotes site
T10878 882-887 NN denotes NF-κB
T10877 875-881 JJ denotes double
T10876 873-874 DT denotes a
T10875 865-872 VB denotes created
T10874 860-864 RB denotes also
T10873 857-859 PRP denotes We
T10872 854-855 -RRB- denotes )
T10871 848-854 NN denotes II-Mut
T10870 828-847 NN denotes HIV-1Lai/Bal-env-κB
T10869 827-828 -LRB- denotes (
T10868 810-826 NN denotes HIV-1Lai/Bal-env
T10867 807-809 IN denotes in
T10866 805-806 -RRB- denotes )
T10865 803-805 CD denotes II
T10864 800-802 NN denotes κB
T10863 799-800 -LRB- denotes (
T10862 794-798 NN denotes site
T10861 788-793 NN denotes NF-κB
T10860 781-787 JJ denotes distal
T10859 776-780 RB denotes more
T10858 774-775 -COMMA- denotes ,
T10857 768-774 JJ denotes second
T10856 764-767 DT denotes the
T10855 761-763 IN denotes in
T10854 754-760 NN denotes change
T10853 751-753 NN denotes TA
T10852 748-750 TO denotes to
T10851 745-747 NN denotes GG
T10850 740-744 JJ denotes same
T10849 736-739 DT denotes the
T10848 725-735 VB denotes introduced
T10847 720-724 RB denotes also
T10846 716-719 CC denotes and
T10845 714-715 -RRB- denotes )
T10844 709-714 NN denotes I-mut
T10843 689-708 NN denotes HIV-1Lai/Bal-env-κB
T10842 688-689 -LRB- denotes (
T10841 686-687 -RRB- denotes )
T10840 684-686 NN denotes TA
T10839 683-684 -LRB- denotes (
T10838 675-682 NN denotes adenine
T10837 671-674 CC denotes and
T10836 663-670 NN denotes thymine
T10835 660-662 TO denotes to
T10834 655-659 PRP denotes them
T10833 647-654 VB denotes changed
T10832 643-646 CC denotes and
T10831 638-642 NN denotes site
T10830 636-637 NN denotes I
T10829 633-635 NN denotes κB
T10828 629-632 DT denotes the
T10827 626-628 IN denotes in
T10826 624-625 -RRB- denotes )
T10825 622-624 NN denotes GG
T10824 621-622 -LRB- denotes (
T10823 612-620 NN denotes guanines
T10822 608-611 CD denotes two
T10821 600-607 VB denotes mutated
T10820 597-599 PRP denotes we
T10819 595-596 -COMMA- denotes ,
T10818 583-595 RB denotes Specifically
T10817 574-581 NN denotes binding
T10816 568-573 NN denotes NFAT5
T10815 559-567 VB denotes preserve
T10814 555-558 CC denotes but
T10813 547-554 NN denotes binding
T10812 541-546 NN denotes NF-κB
T10811 533-540 VB denotes disrupt
T10810 527-532 MD denotes would
T10809 517-526 VB denotes predicted
T10808 514-516 PRP denotes we
T10807 509-513 IN denotes that
T10806 501-508 NN denotes element
T10805 493-500 NN denotes binding
R8236 T10729 T10728 arg1Of perform,To
R8237 T10731 T10729 arg2Of experiments,perform
R8238 T10731 T10730 arg1Of experiments,these
R8239 T10733 T10729 arg1Of we,perform
R8240 T10733 T10734 arg1Of we,constructed
R8241 T10734 T10728 modOf constructed,To
R8242 T10734 T10732 arg1Of constructed,","
R8243 T10736 T10734 arg2Of panel,constructed
R8244 T10736 T10735 arg1Of panel,a
R8245 T10736 T10737 arg1Of panel,of
R8246 T10741 T10737 arg2Of clones,of
R8247 T10741 T10738 arg1Of clones,infectious
R8248 T10741 T10739 arg1Of clones,HIV-1Lai/Bal-env
R8249 T10741 T10740 arg1Of clones,molecular
R8250 T10741 T10742 arg1Of clones,where
R8251 T10746 T10744 arg1Of site,the
R8252 T10746 T10745 arg1Of site,NFAT5
R8253 T10746 T10747 arg1Of site,was
R8254 T10746 T10749 arg2Of site,disrupted
R8255 T10749 T10747 arg2Of disrupted,was
R8256 T10749 T10748 arg1Of disrupted,specifically
R8257 T10749 T10750 arg1Of disrupted,or
R8258 T10750 T10742 arg2Of or,where
R8259 T10750 T10743 arg1Of or,either
R8260 T10755 T10751 arg1Of sites,the
R8261 T10755 T10752 arg1Of sites,two
R8262 T10755 T10753 arg1Of sites,NF-κB
R8263 T10755 T10754 arg1Of sites,binding
R8264 T10755 T10756 arg1Of sites,were
R8265 T10755 T10761 arg2Of sites,disrupted
R8266 T10758 T10759 arg1Of individually,or
R8267 T10759 T10757 arg1Of or,either
R8268 T10760 T10759 arg2Of dually,or
R8269 T10761 T10750 arg2Of disrupted,or
R8270 T10761 T10756 arg2Of disrupted,were
R8271 T10761 T10758 arg1Of disrupted,individually
R8272 T10761 T10760 arg1Of disrupted,dually
R8273 T10761 T10762 arg1Of disrupted,(
R8274 T10764 T10762 arg2Of 3A,(
R8275 T10764 T10763 arg1Of 3A,Figure
R8276 T10765 T10762 arg3Of ),(
R8277 T10768 T10769 arg1Of we,constructed
R8278 T10769 T10766 arg1Of constructed,Specifically
R8279 T10769 T10767 arg1Of constructed,","
R8280 T10769 T10784 arg1Of constructed,by
R8281 T10769 T10797 arg1Of constructed,and
R8282 T10771 T10769 arg2Of clone,constructed
R8283 T10771 T10770 arg1Of clone,a
R8284 T10771 T10772 arg2Of clone,in
R8285 T10771 T10773 arg1Of clone,which
R8286 T10771 T10780 arg1Of clone,(
R8287 T10777 T10774 arg1Of site,the
R8288 T10777 T10775 arg1Of site,NFAT5
R8289 T10777 T10776 arg1Of site,binding
R8290 T10777 T10778 arg1Of site,was
R8291 T10777 T10779 arg2Of site,mutated
R8292 T10779 T10772 arg1Of mutated,in
R8293 T10779 T10778 arg2Of mutated,was
R8294 T10781 T10780 arg2Of named,(
R8295 T10782 T10781 arg3Of HIV-1Lai/Bal-env-N5-Mut,named
R8296 T10783 T10780 arg3Of ),(
R8297 T10785 T10784 arg2Of changing,by
R8298 T10788 T10785 arg2Of dinucleotide,changing
R8299 T10788 T10786 arg1Of dinucleotide,the
R8300 T10788 T10787 arg1Of dinucleotide,CC
R8301 T10788 T10789 arg1Of dinucleotide,to
R8302 T10788 T10791 arg1Of dinucleotide,in
R8303 T10790 T10789 arg2Of TT,to
R8304 T10796 T10791 arg2Of site,in
R8305 T10796 T10792 arg1Of site,the
R8306 T10796 T10793 arg1Of site,core
R8307 T10796 T10794 arg1Of site,NFAT5
R8308 T10796 T10795 arg1Of site,binding
R8309 T10800 T10798 arg2Of mutations,introduced
R8310 T10800 T10799 arg1Of mutations,substitution
R8311 T10800 T10801 arg1Of mutations,into
R8312 T10800 T10804 arg1Of mutations,shared
R8313 T10803 T10801 arg2Of NF-κB/NFAT5,into
R8314 T10803 T10802 arg1Of NF-κB/NFAT5,the
R8315 T10804 T10797 arg2Of shared,and
R8316 T10806 T10804 arg2Of element,shared
R8317 T10806 T10805 arg1Of element,binding
R8318 T10806 T10807 arg1Of element,that
R8319 T10806 T10810 arg1Of element,would
R8320 T10806 T10811 arg1Of element,disrupt
R8321 T10806 T10815 arg1Of element,preserve
R8322 T10808 T10809 arg1Of we,predicted
R8323 T10811 T10810 arg2Of disrupt,would
R8324 T10811 T10814 arg1Of disrupt,but
R8325 T10813 T10811 arg2Of binding,disrupt
R8326 T10813 T10812 arg1Of binding,NF-κB
R8327 T10814 T10809 arg2Of but,predicted
R8328 T10815 T10814 arg2Of preserve,but
R8329 T10817 T10815 arg2Of binding,preserve
R8330 T10817 T10816 arg1Of binding,NFAT5
R8331 T10820 T10821 arg1Of we,mutated
R8332 T10820 T10833 arg1Of we,changed
R8333 T10820 T10848 arg1Of we,introduced
R8334 T10821 T10827 arg1Of mutated,in
R8335 T10821 T10832 arg1Of mutated,and
R8336 T10823 T10821 arg2Of guanines,mutated
R8337 T10823 T10822 arg1Of guanines,two
R8338 T10823 T10824 arg1Of guanines,(
R8339 T10825 T10824 arg2Of GG,(
R8340 T10826 T10824 arg3Of ),(
R8341 T10831 T10827 arg2Of site,in
R8342 T10831 T10828 arg1Of site,the
R8343 T10831 T10829 arg1Of site,κB
R8344 T10831 T10830 arg1Of site,I
R8345 T10832 T10846 arg1Of and,and
R8346 T10833 T10832 arg2Of changed,and
R8347 T10833 T10835 arg1Of changed,to
R8348 T10834 T10833 arg2Of them,changed
R8349 T10836 T10837 arg1Of thymine,and
R8350 T10837 T10835 arg2Of and,to
R8351 T10837 T10839 arg1Of and,(
R8352 T10837 T10842 arg1Of and,(
R8353 T10838 T10837 arg2Of adenine,and
R8354 T10840 T10839 arg2Of TA,(
R8355 T10841 T10839 arg3Of ),(
R8356 T10844 T10842 arg2Of I-mut,(
R8357 T10844 T10843 arg1Of I-mut,HIV-1Lai/Bal-env-κB
R8358 T10845 T10842 arg3Of ),(
R8359 T10846 T10818 arg1Of and,Specifically
R8360 T10846 T10819 arg1Of and,","
R8361 T10848 T10846 arg2Of introduced,and
R8362 T10848 T10847 arg1Of introduced,also
R8363 T10851 T10848 arg2Of GG,introduced
R8364 T10851 T10849 arg1Of GG,the
R8365 T10851 T10850 arg1Of GG,same
R8366 T10851 T10852 arg1Of GG,to
R8367 T10854 T10852 arg2Of change,to
R8368 T10854 T10853 arg1Of change,TA
R8369 T10854 T10855 arg1Of change,in
R8370 T10854 T10867 arg1Of change,in
R8371 T10857 T10858 arg1Of second,","
R8372 T10860 T10858 arg2Of distal,","
R8373 T10860 T10859 arg1Of distal,more
R8374 T10862 T10855 arg2Of site,in
R8375 T10862 T10856 arg1Of site,the
R8376 T10862 T10857 arg1Of site,second
R8377 T10862 T10860 arg1Of site,distal
R8378 T10862 T10861 arg1Of site,NF-κB
R8379 T10862 T10863 arg1Of site,(
R8380 T10864 T10863 arg2Of κB,(
R8381 T10864 T10865 arg1Of κB,II
R8382 T10866 T10863 arg3Of ),(
R8383 T10868 T10867 arg2Of HIV-1Lai/Bal-env,in
R8384 T10868 T10869 arg1Of HIV-1Lai/Bal-env,(
R8385 T10871 T10869 arg2Of II-Mut,(
R8386 T10871 T10870 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R8387 T10872 T10869 arg3Of ),(
R8388 T10873 T10875 arg1Of We,created
R8389 T10873 T10889 arg1Of We,test
R8390 T10875 T10874 arg1Of created,also
R8391 T10875 T10886 arg1Of created,in
R8392 T10881 T10875 arg2Of virus,created
R8393 T10881 T10876 arg1Of virus,a
R8394 T10881 T10877 arg1Of virus,double
R8395 T10881 T10878 arg1Of virus,NF-κB
R8396 T10881 T10879 arg1Of virus,site
R8397 T10881 T10880 arg1Of virus,mutant
R8398 T10881 T10882 arg1Of virus,(
R8399 T10884 T10882 arg2Of I+II-Mut,(
R8400 T10884 T10883 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R8401 T10885 T10882 arg3Of ),(
R8402 T10887 T10886 arg2Of order,in
R8403 T10889 T10886 arg3Of test,in
R8404 T10889 T10888 arg1Of test,to
R8405 T10891 T10889 arg2Of impact,test
R8406 T10891 T10890 arg1Of impact,the
R8407 T10891 T10892 arg1Of impact,of
R8408 T10894 T10892 arg2Of disruption,of
R8409 T10894 T10893 arg1Of disruption,complete
R8410 T10894 T10895 arg1Of disruption,of
R8411 T10897 T10895 arg2Of binding,of
R8412 T10897 T10896 arg1Of binding,NF-κB
R8413 T10897 T10898 arg1Of binding,to
R8414 T10901 T10898 arg2Of LTR,to
R8415 T10901 T10899 arg1Of LTR,the
R8416 T10901 T10900 arg1Of LTR,HIV-1
R8417 T10901 T10902 arg1Of LTR,on
R8418 T10904 T10902 arg2Of regulation,on
R8419 T10904 T10903 arg1Of regulation,MTb

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10523 568-573 Protein denotes NFAT5
T10522 346-349 Protein denotes env
T10521 80-83 Protein denotes env
T10527 920-923 Protein denotes env
T10526 841-844 Protein denotes env
T10525 823-826 Protein denotes env
T10524 702-705 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11120 920-923 http://www.uniprot.org/uniprot/P04578 denotes env
T11119 841-844 http://www.uniprot.org/uniprot/P04578 denotes env
T11118 823-826 http://www.uniprot.org/uniprot/P04578 denotes env
T11117 702-705 http://www.uniprot.org/uniprot/P04578 denotes env
T11116 346-349 http://www.uniprot.org/uniprot/P04578 denotes env
T11115 80-83 http://www.uniprot.org/uniprot/P04578 denotes env
T11109 568-573 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T11108 480-485 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T11107 408-413 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T11106 295-300 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T11105 118-123 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T10549 1029-1039 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-MF

Id Subject Object Predicate Lexical cue
T10571 991-1004 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T10570 541-554 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T10569 167-180 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T10559 997-1004 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10558 574-581 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10557 547-554 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10556 493-500 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10555 414-421 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10554 301-308 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10553 173-180 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T10573 403-407 http://purl.obolibrary.org/obo/GO_0019013 denotes core

sentences

Id Subject Object Predicate Lexical cue
T10452 857-1040 Sentence denotes We also created a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut) in order to test the impact of complete disruption of NF-κB binding to the HIV-1 LTR on MTb regulation.
T10451 583-856 Sentence denotes Specifically, we mutated two guanines (GG) in the κB I site and changed them to thymine and adenine (TA) (HIV-1Lai/Bal-env-κB I-mut) and also introduced the same GG to TA change in the second, more distal NF-κB site (κB II) in HIV-1Lai/Bal-env (HIV-1Lai/Bal-env-κB II-Mut).
T10450 245-582 Sentence denotes Specifically, we constructed a clone in which the NFAT5 binding site was mutated (named HIV-1Lai/Bal-env-N5-Mut) by changing the CC dinucleotide to TT in the core NFAT5 binding site and introduced substitution mutations into the NF-κB/NFAT5 shared binding element that we predicted would disrupt NF-κB binding but preserve NFAT5 binding.
T10449 0-244 Sentence denotes To perform these experiments, we constructed a panel of infectious HIV-1Lai/Bal-env molecular clones where either the NFAT5 site was specifically disrupted or the two NF-κB binding sites were either individually or dually disrupted (Figure 3A).
T168 0-244 Sentence denotes To perform these experiments, we constructed a panel of infectious HIV-1Lai/Bal-env molecular clones where either the NFAT5 site was specifically disrupted or the two NF-κB binding sites were either individually or dually disrupted (Figure 3A).
T169 245-582 Sentence denotes Specifically, we constructed a clone in which the NFAT5 binding site was mutated (named HIV-1Lai/Bal-env-N5-Mut) by changing the CC dinucleotide to TT in the core NFAT5 binding site and introduced substitution mutations into the NF-κB/NFAT5 shared binding element that we predicted would disrupt NF-κB binding but preserve NFAT5 binding.
T170 583-856 Sentence denotes Specifically, we mutated two guanines (GG) in the κB I site and changed them to thymine and adenine (TA) (HIV-1Lai/Bal-env-κB I-mut) and also introduced the same GG to TA change in the second, more distal NF-κB site (κB II) in HIV-1Lai/Bal-env (HIV-1Lai/Bal-env-κB II-Mut).
T171 857-1040 Sentence denotes We also created a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut) in order to test the impact of complete disruption of NF-κB binding to the HIV-1 LTR on MTb regulation.

simple1

Id Subject Object Predicate Lexical cue
T10617 920-923 Protein denotes env
T10616 841-844 Protein denotes env
T10615 823-826 Protein denotes env
T10614 702-705 Protein denotes env
T10613 568-573 Protein denotes NFAT5
T10612 346-349 Protein denotes env
T10611 80-83 Protein denotes env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12027 574-581 Binding denotes binding
T11999 920-923 Protein denotes env
T11998 841-844 Protein denotes env
T11997 823-826 Protein denotes env
T11996 702-705 Protein denotes env
T11995 568-573 Protein denotes NFAT5
T11994 346-349 Protein denotes env
T11993 80-83 Protein denotes env
R9309 T11995 T12027 themeOf NFAT5,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11246 920-923 Protein denotes env
T11245 841-844 Protein denotes env
T11244 823-826 Protein denotes env
T11243 702-705 Protein denotes env
T11242 568-573 Protein denotes NFAT5
T11241 346-349 Protein denotes env
T11240 80-83 Protein denotes env
T11274 574-581 Binding denotes binding
R8686 T11242 T11274 themeOf NFAT5,binding

DLUT931

Id Subject Object Predicate Lexical cue
T11183 574-581 Binding denotes binding
T11182 146-155 Negative_regulation denotes disrupted
T11151 920-923 Protein denotes env
T11150 841-844 Protein denotes env
T11149 823-826 Protein denotes env
T11148 702-705 Protein denotes env
T11147 568-573 Protein denotes NFAT5
T11146 346-349 Protein denotes env
T11145 80-83 Protein denotes env
R8630 T11145 T11182 themeOf env,disrupted
R8631 T11147 T11183 themeOf NFAT5,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12119 291-313 Binding denotes the NFAT5 binding site
T12113 1008-1039 Regulation denotes the HIV-1 LTR on MTb regulation
T12109 408-413 Protein denotes NFAT5
T12108 764-798 Entity denotes the second, more distal NF-κB site
T12103 474-485 Protein denotes NF-κB/NFAT5
T12102 803-805 Entity denotes II
T12099 751-753 Protein denotes TA
T12097 159-186 Entity denotes the two NF-κB binding sites
T12093 568-573 Protein denotes NFAT5
T12087 663-670 Entity denotes thymine
T12085 118-123 Protein denotes NFAT5
T12084 608-625 Entity denotes two guanines (GG)
T12082 636-642 Entity denotes I site
T12079 370-389 Entity denotes the CC dinucleotide
T12075 399-426 Entity denotes the core NFAT5 binding site
T12074 480-485 Protein denotes NFAT5
T12072 370-389 Entity denotes the CC dinucleotide
T12071 711-714 Protein denotes mut
T12069 684-686 Protein denotes TA
T12068 788-793 Protein denotes NF-κB
T12062 295-300 Protein denotes NFAT5
T12061 291-313 Entity denotes the NFAT5 binding site
T12059 848-854 Protein denotes II-Mut
T12058 873-936 Entity denotes a double NF-κB site mutant virus (HIV-1Lai/Bal-env-κB I+II-Mut)
T12055 403-407 Entity denotes core
T12051 882-887 Protein denotes NF-κB
T12050 474-485 Protein denotes NF-κB/NFAT5
T12048 675-682 Entity denotes adenine
T12047 114-128 Entity denotes the NFAT5 site
T12043 1025-1028 Protein denotes MTb
R9345 T12043 T12113 themeOf MTb,the HIV-1 LTR on MTb regulation
R9348 T12061 T12119 themeOf the NFAT5 binding site,the NFAT5 binding site

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11775 1039-1040 . denotes .
T11774 1029-1039 NN denotes regulation
T11773 1025-1028 NNP denotes MTb
T11772 1022-1024 IN denotes on
T11771 1018-1021 NNP denotes LTR
T11770 1012-1017 NNP denotes HIV-1
T11769 1008-1011 DT denotes the
T11768 1005-1007 TO denotes to
T11767 997-1004 JJ denotes binding
T11766 991-996 JJ denotes NF-κB
T11765 988-990 IN denotes of
T11764 977-987 NN denotes disruption
T11763 968-976 JJ denotes complete
T11762 965-967 IN denotes of
T11761 958-964 NN denotes impact
T11760 954-957 DT denotes the
T11759 949-953 VB denotes test
T11758 946-948 TO denotes to
T11757 940-945 NN denotes order
T11756 937-939 IN denotes in
T11755 935-936 -RRB- denotes )
T11754 932-935 NNP denotes Mut
T11753 931-932 : denotes -
T11752 927-931 NNP denotes I+II
T11751 916-926 NNP denotes Bal-env-κB
T11750 915-916 NN denotes /
T11749 907-915 JJ denotes HIV-1Lai
T11748 906-907 -LRB- denotes (
T11747 900-905 NN denotes virus
T11746 893-899 JJ denotes mutant
T11745 888-892 NN denotes site
T11744 882-887 NN denotes NF-κB
T11743 875-881 JJ denotes double
T11742 873-874 DT denotes a
T11741 865-872 VBD denotes created
T11740 860-864 RB denotes also
T11739 857-859 PRP denotes We
T11738 855-856 . denotes .
T11737 854-855 -RRB- denotes )
T11736 848-854 NNP denotes II-Mut
T11735 837-847 NNP denotes Bal-env-κB
T11734 836-837 NNP denotes /
T11733 828-836 NNP denotes HIV-1Lai
T11732 827-828 -LRB- denotes (
T11731 819-826 NNP denotes Bal-env
T11730 818-819 NNP denotes /
T11729 810-818 NNP denotes HIV-1Lai
T11728 807-809 IN denotes in
T11727 805-806 -RRB- denotes )
T11726 803-805 NNP denotes II
T11725 800-802 NNP denotes κB
T11724 799-800 -LRB- denotes (
T11723 794-798 NN denotes site
T11686 626-628 IN denotes in
T11685 624-625 -RRB- denotes )
T11684 622-624 NNP denotes GG
T11683 621-622 -LRB- denotes (
T11682 612-620 NNS denotes guanines
T11681 608-611 CD denotes two
T11680 600-607 VBD denotes mutated
T11679 597-599 PRP denotes we
T11678 595-596 , denotes ,
T11677 583-595 RB denotes Specifically
T11676 581-582 . denotes .
T11675 574-581 JJ denotes binding
T11674 568-573 NNP denotes NFAT5
T11673 559-567 VB denotes preserve
T11672 555-558 CC denotes but
T11671 547-554 JJ denotes binding
T11670 541-546 JJ denotes NF-κB
T11669 533-540 VB denotes disrupt
T11668 527-532 MD denotes would
T11667 517-526 VBD denotes predicted
T11666 514-516 PRP denotes we
T11665 509-513 IN denotes that
T11664 501-508 NN denotes element
T11663 493-500 JJ denotes binding
T11662 486-492 VBD denotes shared
T11661 480-485 NNP denotes NFAT5
T11660 479-480 NNP denotes /
T11659 474-479 NNP denotes NF-κB
T11658 470-473 DT denotes the
T11657 465-469 IN denotes into
T11656 455-464 NNS denotes mutations
T11655 442-454 NN denotes substitution
T11654 431-441 VBN denotes introduced
T11653 427-430 CC denotes and
T11652 422-426 NN denotes site
T11651 414-421 JJ denotes binding
T11650 408-413 CD denotes NFAT5
T11649 403-407 NN denotes core
T11648 399-402 DT denotes the
T11647 396-398 IN denotes in
T11646 393-395 NNP denotes TT
T11645 390-392 TO denotes to
T11644 377-389 NN denotes dinucleotide
T11643 374-376 NNP denotes CC
T11642 370-373 DT denotes the
T11641 361-369 VBG denotes changing
T11640 358-360 IN denotes by
T11639 356-357 -RRB- denotes )
T11638 342-356 NNP denotes Bal-env-N5-Mut
T11637 341-342 NNP denotes /
T11636 333-341 NNP denotes HIV-1Lai
T11635 327-332 VBN denotes named
T11634 326-327 -LRB- denotes (
T11633 318-325 VBN denotes mutated
T11632 314-317 VBD denotes was
T11631 309-313 NN denotes site
T11630 301-308 JJ denotes binding
T11629 295-300 NNP denotes NFAT5
T11628 291-294 DT denotes the
T11627 285-290 WDT denotes which
T11626 282-284 IN denotes in
T11625 276-281 NN denotes clone
T11624 274-275 DT denotes a
T11623 262-273 VBD denotes constructed
T11622 259-261 PRP denotes we
T11621 257-258 , denotes ,
T11620 245-257 RB denotes Specifically
T11619 243-244 . denotes .
T11618 242-243 -RRB- denotes )
T11617 240-242 NN denotes 3A
T11616 233-239 NN denotes Figure
T11615 232-233 -LRB- denotes (
T11614 222-231 VBN denotes disrupted
T11613 215-221 RB denotes dually
T11612 212-214 CC denotes or
T11611 199-211 RB denotes individually
T11610 192-198 RB denotes either
T11609 187-191 VBD denotes were
T11608 181-186 NNS denotes sites
T11607 173-180 JJ denotes binding
T11606 167-172 JJ denotes NF-κB
T11605 163-166 CD denotes two
T11604 159-162 DT denotes the
T11603 156-158 CC denotes or
T11602 146-155 VBN denotes disrupted
T11601 133-145 RB denotes specifically
T11600 129-132 VBD denotes was
T11599 124-128 NN denotes site
T11598 118-123 NNP denotes NFAT5
T11597 114-117 DT denotes the
T11596 107-113 CC denotes either
T11595 101-106 WRB denotes where
T11594 94-100 NNS denotes clones
T11593 84-93 JJ denotes molecular
T11592 76-83 JJ denotes Bal-env
T11591 75-76 NN denotes /
T11590 67-75 JJ denotes HIV-1Lai
T11589 56-66 JJ denotes infectious
T11588 53-55 IN denotes of
T11587 47-52 NN denotes panel
T11586 45-46 DT denotes a
T11585 33-44 VBD denotes constructed
T11584 30-32 PRP denotes we
T11583 28-29 , denotes ,
T11582 17-28 NNS denotes experiments
T11581 11-16 DT denotes these
T11580 3-10 VB denotes perform
T11579 0-2 TO denotes To
T11722 788-793 NN denotes NF-κB
T11721 781-787 JJ denotes distal
T11720 776-780 RBR denotes more
T11719 774-775 , denotes ,
T11718 768-774 JJ denotes second
T11717 764-767 DT denotes the
T11716 761-763 IN denotes in
T11715 754-760 NN denotes change
T11714 751-753 NNP denotes TA
T11713 748-750 TO denotes to
T11712 745-747 NNP denotes GG
T11711 740-744 JJ denotes same
T11710 736-739 DT denotes the
T11709 725-735 VBD denotes introduced
T11708 720-724 RB denotes also
T11707 716-719 CC denotes and
T11706 714-715 -RRB- denotes )
T11705 709-714 NNP denotes I-mut
T11704 698-708 NNP denotes Bal-env-κB
T11703 697-698 NN denotes /
T11702 689-697 JJ denotes HIV-1Lai
T11701 688-689 -LRB- denotes (
T11700 686-687 -RRB- denotes )
T11699 684-686 NNP denotes TA
T11698 683-684 -LRB- denotes (
T11697 675-682 VB denotes adenine
T11696 671-674 CC denotes and
T11695 663-670 VB denotes thymine
T11694 660-662 TO denotes to
T11693 655-659 PRP denotes them
T11692 647-654 VBD denotes changed
T11691 643-646 CC denotes and
T11690 638-642 NN denotes site
T11689 636-637 PRP denotes I
T11688 633-635 NN denotes κB
T11687 629-632 DT denotes the
R8894 T11579 T11580 aux To,perform
R8895 T11580 T11585 advcl perform,constructed
R8896 T11581 T11582 det these,experiments
R8897 T11582 T11580 dobj experiments,perform
R8898 T11583 T11585 punct ",",constructed
R8899 T11584 T11585 nsubj we,constructed
R8900 T11585 T11585 ROOT constructed,constructed
R8901 T11586 T11587 det a,panel
R8902 T11587 T11585 dobj panel,constructed
R8903 T11588 T11587 prep of,panel
R8904 T11589 T11594 amod infectious,clones
R8905 T11590 T11591 amod HIV-1Lai,/
R8906 T11591 T11594 nmod /,clones
R8907 T11592 T11594 amod Bal-env,clones
R8908 T11593 T11594 amod molecular,clones
R8909 T11594 T11588 pobj clones,of
R8910 T11595 T11602 advmod where,disrupted
R8911 T11596 T11599 preconj either,site
R8912 T11597 T11599 det the,site
R8913 T11598 T11599 compound NFAT5,site
R8914 T11599 T11602 nsubjpass site,disrupted
R8915 T11600 T11602 auxpass was,disrupted
R8916 T11601 T11602 advmod specifically,disrupted
R8917 T11602 T11594 relcl disrupted,clones
R8918 T11603 T11594 cc or,clones
R8919 T11604 T11608 det the,sites
R8920 T11605 T11608 nummod two,sites
R8921 T11606 T11608 amod NF-κB,sites
R8922 T11607 T11608 amod binding,sites
R8923 T11608 T11594 conj sites,clones
R8924 T11609 T11614 auxpass were,disrupted
R8925 T11610 T11611 preconj either,individually
R8926 T11611 T11614 advmod individually,disrupted
R8927 T11612 T11611 cc or,individually
R8928 T11613 T11611 conj dually,individually
R8929 T11614 T11585 conj disrupted,constructed
R8930 T11615 T11617 punct (,3A
R8931 T11616 T11617 compound Figure,3A
R8932 T11617 T11614 oprd 3A,disrupted
R8933 T11618 T11614 punct ),disrupted
R8934 T11619 T11585 punct .,constructed
R8935 T11620 T11623 advmod Specifically,constructed
R8936 T11621 T11623 punct ",",constructed
R8937 T11622 T11623 nsubj we,constructed
R8938 T11623 T11623 ROOT constructed,constructed
R8939 T11624 T11625 det a,clone
R8940 T11625 T11623 dobj clone,constructed
R8941 T11626 T11633 prep in,mutated
R8942 T11627 T11626 pobj which,in
R8943 T11628 T11631 det the,site
R8944 T11629 T11631 nmod NFAT5,site
R8945 T11630 T11631 amod binding,site
R8946 T11631 T11633 nsubjpass site,mutated
R8947 T11632 T11633 auxpass was,mutated
R8948 T11633 T11625 relcl mutated,clone
R8949 T11634 T11633 punct (,mutated
R8950 T11635 T11625 acl named,clone
R8951 T11636 T11638 compound HIV-1Lai,Bal-env-N5-Mut
R8952 T11637 T11638 compound /,Bal-env-N5-Mut
R8953 T11638 T11635 oprd Bal-env-N5-Mut,named
R8954 T11639 T11625 punct ),clone
R8955 T11640 T11623 prep by,constructed
R8956 T11641 T11640 pcomp changing,by
R8957 T11642 T11644 det the,dinucleotide
R8958 T11643 T11644 compound CC,dinucleotide
R8959 T11644 T11641 dobj dinucleotide,changing
R8960 T11645 T11641 prep to,changing
R8961 T11646 T11645 pobj TT,to
R8962 T11647 T11641 prep in,changing
R8963 T11648 T11652 det the,site
R8964 T11649 T11652 amod core,site
R8965 T11650 T11652 nummod NFAT5,site
R8966 T11651 T11652 amod binding,site
R8967 T11652 T11647 pobj site,in
R8968 T11653 T11623 cc and,constructed
R8969 T11654 T11623 conj introduced,constructed
R8970 T11655 T11656 compound substitution,mutations
R8971 T11656 T11654 dobj mutations,introduced
R8972 T11657 T11654 prep into,introduced
R8973 T11658 T11661 det the,NFAT5
R8974 T11659 T11661 compound NF-κB,NFAT5
R8975 T11660 T11661 compound /,NFAT5
R8976 T11661 T11657 pobj NFAT5,into
R8977 T11662 T11623 conj shared,constructed
R8978 T11663 T11664 amod binding,element
R8979 T11664 T11662 dobj element,shared
R8980 T11665 T11667 dobj that,predicted
R8981 T11666 T11667 nsubj we,predicted
R8982 T11667 T11664 relcl predicted,element
R8983 T11668 T11669 aux would,disrupt
R8984 T11669 T11667 ccomp disrupt,predicted
R8985 T11670 T11671 amod NF-κB,binding
R8986 T11671 T11669 dobj binding,disrupt
R8987 T11672 T11669 cc but,disrupt
R8988 T11673 T11669 conj preserve,disrupt
R8989 T11674 T11673 dobj NFAT5,preserve
R8990 T11675 T11673 advcl binding,preserve
R8991 T11676 T11623 punct .,constructed
R8992 T11677 T11680 advmod Specifically,mutated
R8993 T11678 T11680 punct ",",mutated
R8994 T11679 T11680 nsubj we,mutated
R8995 T11680 T11680 ROOT mutated,mutated
R8996 T11681 T11682 nummod two,guanines
R8997 T11682 T11680 dobj guanines,mutated
R8998 T11683 T11682 punct (,guanines
R8999 T11684 T11682 appos GG,guanines
R9000 T11685 T11682 punct ),guanines
R9001 T11686 T11680 prep in,mutated
R9002 T11687 T11688 det the,κB
R9003 T11688 T11686 pobj κB,in
R9004 T11689 T11690 nsubj I,site
R9005 T11690 T11680 conj site,mutated
R9006 T11691 T11680 cc and,mutated
R9007 T11692 T11680 conj changed,mutated
R9008 T11693 T11692 dobj them,changed
R9009 T11694 T11695 aux to,thymine
R9010 T11695 T11692 advcl thymine,changed
R9011 T11696 T11695 cc and,thymine
R9012 T11697 T11695 conj adenine,thymine
R9013 T11698 T11699 punct (,TA
R9014 T11699 T11697 dobj TA,adenine
R9015 T11700 T11695 punct ),thymine
R9016 T11701 T11705 punct (,I-mut
R9017 T11702 T11703 amod HIV-1Lai,/
R9018 T11703 T11705 compound /,I-mut
R9019 T11704 T11705 compound Bal-env-κB,I-mut
R9020 T11705 T11692 parataxis I-mut,changed
R9021 T11706 T11705 punct ),I-mut
R9022 T11707 T11692 cc and,changed
R9023 T11708 T11709 advmod also,introduced
R9024 T11709 T11692 conj introduced,changed
R9025 T11710 T11712 det the,GG
R9026 T11711 T11712 amod same,GG
R9027 T11712 T11709 dobj GG,introduced
R9028 T11713 T11709 prep to,introduced
R9029 T11714 T11715 compound TA,change
R9030 T11715 T11713 pobj change,to
R9031 T11716 T11715 prep in,change
R9032 T11717 T11718 det the,second
R9033 T11718 T11723 amod second,site
R9034 T11719 T11723 punct ",",site
R9035 T11720 T11721 advmod more,distal
R9036 T11721 T11723 amod distal,site
R9037 T11722 T11723 compound NF-κB,site
R9038 T11723 T11716 pobj site,in
R9039 T11724 T11723 punct (,site
R9040 T11725 T11726 compound κB,II
R9041 T11726 T11723 appos II,site
R9042 T11727 T11723 punct ),site
R9043 T11728 T11715 prep in,change
R9044 T11729 T11731 compound HIV-1Lai,Bal-env
R9045 T11730 T11731 compound /,Bal-env
R9046 T11731 T11728 pobj Bal-env,in
R9047 T11732 T11731 punct (,Bal-env
R9048 T11733 T11736 compound HIV-1Lai,II-Mut
R9049 T11734 T11736 compound /,II-Mut
R9050 T11735 T11736 compound Bal-env-κB,II-Mut
R9051 T11736 T11731 appos II-Mut,Bal-env
R9052 T11737 T11731 punct ),Bal-env
R9053 T11738 T11680 punct .,mutated
R9054 T11739 T11741 nsubj We,created
R9055 T11740 T11741 advmod also,created
R9056 T11741 T11741 ROOT created,created
R9057 T11742 T11747 det a,virus
R9058 T11743 T11744 amod double,NF-κB
R9059 T11744 T11745 compound NF-κB,site
R9060 T11745 T11747 nmod site,virus
R9061 T11746 T11747 amod mutant,virus
R9062 T11747 T11741 dobj virus,created
R9063 T11748 T11756 punct (,in
R9064 T11749 T11750 amod HIV-1Lai,/
R9065 T11750 T11752 compound /,I+II
R9066 T11751 T11752 compound Bal-env-κB,I+II
R9067 T11752 T11756 nsubj I+II,in
R9068 T11753 T11754 punct -,Mut
R9069 T11754 T11752 appos Mut,I+II
R9070 T11755 T11752 punct ),I+II
R9071 T11756 T11741 prep in,created
R9072 T11757 T11756 pobj order,in
R9073 T11758 T11759 aux to,test
R9074 T11759 T11757 acl test,order
R9075 T11760 T11761 det the,impact
R9076 T11761 T11759 dobj impact,test
R9077 T11762 T11761 prep of,impact
R9078 T11763 T11764 amod complete,disruption
R9079 T11764 T11762 pobj disruption,of
R9080 T11765 T11764 prep of,disruption
R9081 T11766 T11767 amod NF-κB,binding
R9082 T11767 T11759 oprd binding,test
R9083 T11768 T11767 prep to,binding
R9084 T11769 T11771 det the,LTR
R9085 T11770 T11771 compound HIV-1,LTR
R9086 T11771 T11768 pobj LTR,to
R9087 T11772 T11771 prep on,LTR
R9088 T11773 T11774 compound MTb,regulation
R9089 T11774 T11772 pobj regulation,on
R9090 T11775 T11741 punct .,created

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11324 706-710 Protein denotes κB I
T11323 702-705 Protein denotes env
T11322 633-642 Protein denotes κB I site
T11321 574-581 Binding denotes binding
T11320 547-554 Binding denotes binding
T11319 568-573 Protein denotes NFAT5
T11318 541-546 Protein denotes NF-κB
T11317 480-485 Protein denotes NFAT5
T11316 474-479 Protein denotes NF-κB
T11315 408-426 Protein denotes NFAT5 binding site
T11314 353-356 Protein denotes Mut
T11313 350-352 Protein denotes N5
T11312 346-349 Protein denotes env
T11311 295-313 Protein denotes NFAT5 binding site
T11310 167-172 Protein denotes NF-κB
T11309 118-128 Protein denotes NFAT5 site
T11337 997-1004 Binding denotes binding
T11336 997-1004 Binding denotes binding
T11335 1012-1021 Protein denotes HIV-1 LTR
T11334 991-996 Protein denotes NF-κB
T11333 932-935 Protein denotes Mut
T11332 916-931 Protein denotes Bal-env-κB I+II
T11331 851-854 Protein denotes Mut
T11330 845-850 Protein denotes κB II
T11329 841-844 Protein denotes env
T11328 823-826 Protein denotes env
T11327 800-805 Protein denotes κB II
T11326 788-798 Protein denotes NF-κB site
T11325 711-714 Protein denotes mut
R8730 T11318 T11320 themeOf NF-κB,binding
R8731 T11319 T11321 themeOf NFAT5,binding
R8732 T11334 T11336 themeOf NF-κB,binding
R8733 T11334 T11337 themeOf NF-κB,binding
R8734 T11335 T11337 themeOf HIV-1 LTR,binding

testone

Id Subject Object Predicate Lexical cue
T10352 997-1004 Binding denotes binding
T10351 977-987 Negative_regulation denotes disruption
T10350 754-760 Regulation denotes change
T10349 574-581 Binding denotes binding
T10348 547-554 Binding denotes binding
T10347 533-540 Negative_regulation denotes disrupt
T10346 414-426 Entity denotes binding site
T10345 146-155 Negative_regulation denotes disrupted
T10323 920-923 Protein denotes env
T10322 841-844 Protein denotes env
T10321 823-826 Protein denotes env
T10320 702-705 Protein denotes env
T10319 568-573 Protein denotes NFAT5
T10318 346-349 Protein denotes env
T10317 80-83 Protein denotes env
R8064 T10319 T10349 themeOf NFAT5,binding
R8080 T10348 T10347 themeOf binding,disrupt
R8081 T10349 T10347 themeOf binding,disrupt
R8082 T10352 T10351 themeOf binding,disruption

test3

Id Subject Object Predicate Lexical cue
T10416 920-923 Protein denotes env
T10415 841-844 Protein denotes env
T10414 823-826 Protein denotes env
T10413 702-705 Protein denotes env
T10412 574-581 Binding denotes binding
T10411 568-573 Protein denotes NFAT5
T10410 547-554 Binding denotes binding
T10409 346-349 Protein denotes env
T10408 146-155 Negative_regulation denotes disrupted
T10407 80-83 Protein denotes env
T10381 920-923 Protein denotes env
T10380 841-844 Protein denotes env
T10379 823-826 Protein denotes env
T10378 702-705 Protein denotes env
T10377 568-573 Protein denotes NFAT5
T10376 346-349 Protein denotes env
T10375 80-83 Protein denotes env
R8091 T10411 T10412 themeOf NFAT5,binding
R8092 T10411 T10410 themeOf NFAT5,binding