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PMC:3320587 / 2689-2964 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-17359235-98010766 211-212 17359235 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1173 267-275 VB denotes produced
T1172 256-266 NN denotes chemokines
T1171 252-255 CC denotes and
T1170 242-251 NN denotes cytokines
T1169 229-241 JJ denotes inflammatory
T1168 227-228 -COMMA- denotes ,
T1167 216-227 RB denotes Furthermore
T1166 213-214 -RRB- denotes )
T1165 212-213 -RRB- denotes ]
T1164 211-212 CD denotes 3
T1163 210-211 -LRB- denotes [
T1162 207-209 IN denotes in
T1161 198-206 VB denotes reviewed
T1160 197-198 -LRB- denotes (
T1159 193-196 NN denotes LTR
T1158 184-192 JJ denotes proviral
T1157 180-183 DT denotes the
T1156 175-179 IN denotes from
T1155 161-174 NN denotes transcription
T1154 154-160 VB denotes induce
T1153 145-153 RB denotes directly
T1152 140-144 WDT denotes that
T1151 131-139 NN denotes cascades
T1150 121-130 NN denotes signaling
T1149 111-120 VB denotes activates
T1148 100-110 NN denotes phagocytes
T1147 88-99 JJ denotes mononuclear
T1146 85-87 IN denotes on
T1145 81-84 NN denotes MTb
T1144 78-80 IN denotes by
T1143 76-77 -RRB- denotes )
T1142 72-76 NN denotes PRRs
T1141 71-72 -LRB- denotes (
T1140 61-70 NN denotes receptors
T1139 49-60 NN denotes recognition
T1138 40-48 NN denotes pathogen
T1137 37-39 IN denotes of
T1136 26-36 NN denotes engagement
T1135 19-25 JJ denotes Direct
T1134 16-17 -RRB- denotes ]
T1133 15-16 CD denotes 2
T1132 14-15 -LRB- denotes [
T1131 12-13 -COMMA- denotes ,
T1130 11-12 -RRB- denotes ]
T1129 10-11 CD denotes 1
T1128 9-10 -LRB- denotes [
T1127 7-8 -RRB- denotes )
T1126 2-7 NN denotes HIV-1
T1125 1-2 -LRB- denotes (
R699 T1126 T1125 arg2Of HIV-1,(
R700 T1127 T1125 arg3Of ),(
R701 T1129 T1128 arg2Of 1,[
R702 T1130 T1128 arg3Of ],[
R703 T1133 T1132 arg2Of 2,[
R704 T1134 T1132 arg3Of ],[
R705 T1136 T1135 arg1Of engagement,Direct
R706 T1136 T1137 arg1Of engagement,of
R707 T1136 T1144 arg1Of engagement,by
R708 T1136 T1146 arg1Of engagement,on
R709 T1136 T1149 arg1Of engagement,activates
R710 T1140 T1137 arg2Of receptors,of
R711 T1140 T1138 arg1Of receptors,pathogen
R712 T1140 T1139 arg1Of receptors,recognition
R713 T1140 T1141 arg1Of receptors,(
R714 T1142 T1141 arg2Of PRRs,(
R715 T1143 T1141 arg3Of ),(
R716 T1145 T1144 arg2Of MTb,by
R717 T1148 T1146 arg2Of phagocytes,on
R718 T1148 T1147 arg1Of phagocytes,mononuclear
R719 T1151 T1149 arg2Of cascades,activates
R720 T1151 T1150 arg1Of cascades,signaling
R721 T1151 T1152 arg1Of cascades,that
R722 T1151 T1154 arg1Of cascades,induce
R723 T1154 T1153 arg1Of induce,directly
R724 T1155 T1154 arg2Of transcription,induce
R725 T1155 T1156 arg1Of transcription,from
R726 T1155 T1160 arg1Of transcription,(
R727 T1159 T1156 arg2Of LTR,from
R728 T1159 T1157 arg1Of LTR,the
R729 T1159 T1158 arg1Of LTR,proviral
R730 T1161 T1160 arg2Of reviewed,(
R731 T1161 T1162 arg1Of reviewed,in
R732 T1161 T1163 arg1Of reviewed,[
R733 T1164 T1163 arg2Of 3,[
R734 T1165 T1163 arg3Of ],[
R735 T1166 T1160 arg3Of ),(
R736 T1170 T1171 arg1Of cytokines,and
R737 T1171 T1169 arg1Of and,inflammatory
R738 T1171 T1173 arg2Of and,produced
R740 T1172 T1171 arg2Of chemokines,and

GO-BP

Id Subject Object Predicate Lexical cue
T1007 161-174 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1005 121-139 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling cascades
T1003 121-130 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1001 111-139 http://purl.obolibrary.org/obo/GO_1903572 denotes activates signaling cascades
T999 111-139 http://purl.obolibrary.org/obo/GO_1902533 denotes activates signaling cascades

sentences

Id Subject Object Predicate Lexical cue
T926 19-215 Sentence denotes Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]).
T18 19-215 Sentence denotes Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2768 72-76 Protein denotes PRRs
T2765 242-251 Protein denotes cytokines
T2762 49-77 Protein denotes recognition receptors (PRRs)
T2746 88-110 Entity denotes mononuclear phagocytes
T2727 81-84 Protein denotes MTb
T2705 256-275 Protein denotes chemokines produced

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2010 267-275 VBN denotes produced
T2009 256-266 NNS denotes chemokines
T2008 252-255 CC denotes and
T2007 242-251 NNS denotes cytokines
T2006 229-241 JJ denotes inflammatory
T2005 227-228 , denotes ,
T2004 216-227 RB denotes Furthermore
T2003 214-215 . denotes .
T2002 213-214 -RRB- denotes )
T2001 212-213 NNP denotes ]
T2000 211-212 CD denotes 3
T1999 210-211 NNP denotes [
T1998 207-209 IN denotes in
T1997 198-206 VBN denotes reviewed
T1996 197-198 -LRB- denotes (
T1995 193-196 NNP denotes LTR
T1994 184-192 JJ denotes proviral
T1993 180-183 DT denotes the
T1992 175-179 IN denotes from
T1991 161-174 NN denotes transcription
T1990 154-160 VBP denotes induce
T1989 145-153 RB denotes directly
T1988 140-144 WDT denotes that
T1987 131-139 NNS denotes cascades
T1986 121-130 VBG denotes signaling
T1985 111-120 VBZ denotes activates
T1984 100-110 NNS denotes phagocytes
T1983 88-99 NN denotes mononuclear
T1982 85-87 IN denotes on
T1981 81-84 NNP denotes MTb
T1980 78-80 IN denotes by
T1979 76-77 -RRB- denotes )
T1978 72-76 NNS denotes PRRs
T1977 71-72 -LRB- denotes (
T1976 61-70 NNS denotes receptors
T1975 49-60 NN denotes recognition
T1974 40-48 NN denotes pathogen
T1973 37-39 IN denotes of
T1972 26-36 NN denotes engagement
T1971 19-25 NNP denotes Direct
T1970 17-18 . denotes .
T1969 16-17 NNP denotes ]
T1968 15-16 CD denotes 2
T1967 14-15 NNP denotes [
T1966 12-13 , denotes ,
T1965 11-12 NNP denotes ]
T1964 10-11 CD denotes 1
T1963 9-10 NN denotes [
T1962 7-8 -RRB- denotes )
T1961 2-7 NN denotes HIV-1
T1960 1-2 -LRB- denotes (
R1452 T2010 T2009 acl produced,chemokines
R1557 T1978 T1976 appos PRRs,receptors
R1561 T1979 T1976 punct ),receptors
R1562 T1980 T1972 prep by,engagement
R1563 T1981 T1980 pobj MTb,by
R1564 T1982 T1972 prep on,engagement
R1565 T1983 T1984 compound mononuclear,phagocytes
R1571 T1984 T1982 pobj phagocytes,on
R1574 T1985 T1985 ROOT activates,activates
R1577 T1986 T1985 xcomp signaling,activates
R1581 T1987 T1986 dobj cascades,signaling
R1585 T1988 T1990 nsubj that,induce
R1589 T1989 T1990 advmod directly,induce
R1594 T1990 T1987 relcl induce,cascades
R1598 T1991 T1990 dobj transcription,induce
R1601 T1992 T1990 prep from,induce
R1605 T1993 T1995 det the,LTR
R1610 T1994 T1995 compound proviral,LTR
R1428 T1995 T1992 pobj LTR,from
R1430 T1996 T1995 punct (,LTR
R1432 T1997 T1995 acl reviewed,LTR
R1433 T1998 T1997 prep in,reviewed
R1434 T1999 T1998 pobj [,in
R1436 T2000 T2001 nummod 3,]
R1438 T2001 T1999 appos ],[
R1440 T2002 T1999 punct ),[
R1441 T2003 T1985 punct .,activates
R1446 T2006 T2007 amod inflammatory,cytokines
R1448 T2008 T2007 cc and,cytokines
R1450 T2009 T2007 conj chemokines,cytokines
R1500 T1963 T1965 nmod [,]
R1504 T1964 T1965 nummod 1,]
R1510 T1966 T1965 punct ",",]
R1515 T1967 T1969 nmod [,]
R1522 T1968 T1969 nummod 2,]
R1527 T1969 T1965 appos ],]
R1534 T1971 T1972 amod Direct,engagement
R1539 T1972 T1985 nsubj engagement,activates
R1542 T1973 T1972 prep of,engagement
R1546 T1974 T1975 compound pathogen,recognition
R1550 T1975 T1976 compound recognition,receptors
R1554 T1976 T1973 pobj receptors,of
R1556 T1977 T1976 punct (,receptors

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1880 26-36 Binding denotes engagement
T1879 26-36 Binding denotes engagement
T1878 72-76 Protein denotes PRRs
T1877 40-70 Protein denotes pathogen recognition receptors
R1391 T1877 T1879 themeOf pathogen recognition receptors,engagement
R1392 T1878 T1880 themeOf PRRs,engagement