PMC:3320587 / 2648-3051
Annnotations
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 22496647-17359235-98010766 | 252-253 | 17359235 | denotes | 3 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1186 | 393-401 | NN | denotes | pathways |
| T1185 | 380-392 | NN | denotes | transduction |
| T1184 | 373-379 | NN | denotes | signal |
| T1183 | 364-372 | VB | denotes | activate |
| T1182 | 354-363 | NN | denotes | infection |
| T1181 | 350-353 | NN | denotes | MTb |
| T1180 | 347-349 | TO | denotes | to |
| T1179 | 338-346 | NN | denotes | response |
| T1178 | 335-337 | IN | denotes | in |
| T1177 | 330-334 | NN | denotes | host |
| T1176 | 324-329 | JJ | denotes | human |
| T1175 | 320-323 | DT | denotes | the |
| T1174 | 317-319 | IN | denotes | by |
| T1173 | 308-316 | VB | denotes | produced |
| T1172 | 297-307 | NN | denotes | chemokines |
| T1171 | 293-296 | CC | denotes | and |
| T1170 | 283-292 | NN | denotes | cytokines |
| T1169 | 270-282 | JJ | denotes | inflammatory |
| T1168 | 268-269 | -COMMA- | denotes | , |
| T1167 | 257-268 | RB | denotes | Furthermore |
| T1166 | 254-255 | -RRB- | denotes | ) |
| T1165 | 253-254 | -RRB- | denotes | ] |
| T1164 | 252-253 | CD | denotes | 3 |
| T1163 | 251-252 | -LRB- | denotes | [ |
| T1162 | 248-250 | IN | denotes | in |
| T1161 | 239-247 | VB | denotes | reviewed |
| T1160 | 238-239 | -LRB- | denotes | ( |
| T1159 | 234-237 | NN | denotes | LTR |
| T1158 | 225-233 | JJ | denotes | proviral |
| T1157 | 221-224 | DT | denotes | the |
| T1156 | 216-220 | IN | denotes | from |
| T1155 | 202-215 | NN | denotes | transcription |
| T1154 | 195-201 | VB | denotes | induce |
| T1153 | 186-194 | RB | denotes | directly |
| T1152 | 181-185 | WDT | denotes | that |
| T1151 | 172-180 | NN | denotes | cascades |
| T1150 | 162-171 | NN | denotes | signaling |
| T1149 | 152-161 | VB | denotes | activates |
| T1148 | 141-151 | NN | denotes | phagocytes |
| T1147 | 129-140 | JJ | denotes | mononuclear |
| T1146 | 126-128 | IN | denotes | on |
| T1145 | 122-125 | NN | denotes | MTb |
| T1144 | 119-121 | IN | denotes | by |
| T1143 | 117-118 | -RRB- | denotes | ) |
| T1142 | 113-117 | NN | denotes | PRRs |
| T1141 | 112-113 | -LRB- | denotes | ( |
| T1140 | 102-111 | NN | denotes | receptors |
| T1139 | 90-101 | NN | denotes | recognition |
| T1138 | 81-89 | NN | denotes | pathogen |
| T1137 | 78-80 | IN | denotes | of |
| T1136 | 67-77 | NN | denotes | engagement |
| T1135 | 60-66 | JJ | denotes | Direct |
| T1134 | 57-58 | -RRB- | denotes | ] |
| T1133 | 56-57 | CD | denotes | 2 |
| T1132 | 55-56 | -LRB- | denotes | [ |
| T1131 | 53-54 | -COMMA- | denotes | , |
| T1130 | 52-53 | -RRB- | denotes | ] |
| T1129 | 51-52 | CD | denotes | 1 |
| T1128 | 50-51 | -LRB- | denotes | [ |
| T1127 | 48-49 | -RRB- | denotes | ) |
| T1126 | 43-48 | NN | denotes | HIV-1 |
| T1125 | 42-43 | -LRB- | denotes | ( |
| T1124 | 40-41 | CD | denotes | 1 |
| T1123 | 35-39 | NN | denotes | type |
| T1122 | 29-34 | NN | denotes | virus |
| T1121 | 12-28 | NN | denotes | immunodeficiency |
| T1120 | 6-11 | JJ | denotes | human |
| T1119 | 1-5 | IN | denotes | with |
| R690 | T1123 | T1119 | arg2Of | type,with |
| R691 | T1123 | T1120 | arg1Of | type,human |
| R692 | T1123 | T1121 | arg1Of | type,immunodeficiency |
| R693 | T1123 | T1122 | arg1Of | type,virus |
| R694 | T1123 | T1124 | arg1Of | type,1 |
| R695 | T1123 | T1125 | arg1Of | type,( |
| R696 | T1123 | T1128 | arg1Of | type,[ |
| R697 | T1123 | T1131 | arg1Of | type,"," |
| R698 | T1123 | T1132 | arg1Of | type,[ |
| R699 | T1126 | T1125 | arg2Of | HIV-1,( |
| R700 | T1127 | T1125 | arg3Of | ),( |
| R701 | T1129 | T1128 | arg2Of | 1,[ |
| R702 | T1130 | T1128 | arg3Of | ],[ |
| R703 | T1133 | T1132 | arg2Of | 2,[ |
| R704 | T1134 | T1132 | arg3Of | ],[ |
| R705 | T1136 | T1135 | arg1Of | engagement,Direct |
| R706 | T1136 | T1137 | arg1Of | engagement,of |
| R707 | T1136 | T1144 | arg1Of | engagement,by |
| R708 | T1136 | T1146 | arg1Of | engagement,on |
| R709 | T1136 | T1149 | arg1Of | engagement,activates |
| R710 | T1140 | T1137 | arg2Of | receptors,of |
| R711 | T1140 | T1138 | arg1Of | receptors,pathogen |
| R712 | T1140 | T1139 | arg1Of | receptors,recognition |
| R713 | T1140 | T1141 | arg1Of | receptors,( |
| R714 | T1142 | T1141 | arg2Of | PRRs,( |
| R715 | T1143 | T1141 | arg3Of | ),( |
| R716 | T1145 | T1144 | arg2Of | MTb,by |
| R717 | T1148 | T1146 | arg2Of | phagocytes,on |
| R718 | T1148 | T1147 | arg1Of | phagocytes,mononuclear |
| R719 | T1151 | T1149 | arg2Of | cascades,activates |
| R720 | T1151 | T1150 | arg1Of | cascades,signaling |
| R721 | T1151 | T1152 | arg1Of | cascades,that |
| R722 | T1151 | T1154 | arg1Of | cascades,induce |
| R723 | T1154 | T1153 | arg1Of | induce,directly |
| R724 | T1155 | T1154 | arg2Of | transcription,induce |
| R725 | T1155 | T1156 | arg1Of | transcription,from |
| R726 | T1155 | T1160 | arg1Of | transcription,( |
| R727 | T1159 | T1156 | arg2Of | LTR,from |
| R728 | T1159 | T1157 | arg1Of | LTR,the |
| R729 | T1159 | T1158 | arg1Of | LTR,proviral |
| R730 | T1161 | T1160 | arg2Of | reviewed,( |
| R731 | T1161 | T1162 | arg1Of | reviewed,in |
| R732 | T1161 | T1163 | arg1Of | reviewed,[ |
| R733 | T1164 | T1163 | arg2Of | 3,[ |
| R734 | T1165 | T1163 | arg3Of | ],[ |
| R735 | T1166 | T1160 | arg3Of | ),( |
| R736 | T1170 | T1171 | arg1Of | cytokines,and |
| R737 | T1171 | T1169 | arg1Of | and,inflammatory |
| R738 | T1171 | T1173 | arg2Of | and,produced |
| R739 | T1171 | T1183 | arg1Of | and,activate |
| R740 | T1172 | T1171 | arg2Of | chemokines,and |
| R741 | T1173 | T1178 | arg1Of | produced,in |
| R742 | T1177 | T1173 | arg1Of | host,produced |
| R743 | T1177 | T1174 | arg2Of | host,by |
| R744 | T1177 | T1175 | arg1Of | host,the |
| R745 | T1177 | T1176 | arg1Of | host,human |
| R746 | T1178 | T1180 | arg1Of | in,to |
| R747 | T1179 | T1178 | arg2Of | response,in |
| R748 | T1182 | T1178 | arg3Of | infection,in |
| R749 | T1182 | T1181 | arg1Of | infection,MTb |
| R750 | T1183 | T1167 | arg1Of | activate,Furthermore |
| R751 | T1183 | T1168 | arg1Of | activate,"," |
| R752 | T1186 | T1183 | arg2Of | pathways,activate |
| R753 | T1186 | T1184 | arg1Of | pathways,signal |
| R754 | T1186 | T1185 | arg1Of | pathways,transduction |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1012 | 364-392 | http://purl.obolibrary.org/obo/GO_1904515 | denotes | activate signal transduction |
| T1011 | 330-346 | http://purl.obolibrary.org/obo/GO_0075136 | denotes | host in response |
| T1007 | 202-215 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T1006 | 373-392 | http://purl.obolibrary.org/obo/GO_0007165 | denotes | signal transduction |
| T1005 | 162-180 | http://purl.obolibrary.org/obo/GO_0007165 | denotes | signaling cascades |
| T1003 | 162-171 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T1002 | 364-392 | http://purl.obolibrary.org/obo/GO_1903572 | denotes | activate signal transduction |
| T1001 | 152-180 | http://purl.obolibrary.org/obo/GO_1903572 | denotes | activates signaling cascades |
| T1000 | 364-401 | http://purl.obolibrary.org/obo/GO_1902533 | denotes | activate signal transduction pathways |
| T999 | 152-180 | http://purl.obolibrary.org/obo/GO_1902533 | denotes | activates signaling cascades |
| T1016 | 364-401 | http://purl.obolibrary.org/obo/GO_0038007 | denotes | activate signal transduction pathways |
| T1015 | 364-392 | http://purl.obolibrary.org/obo/GO_1902849 | denotes | activate signal transduction |
| T1014 | 364-392 | http://purl.obolibrary.org/obo/GO_0009967 | denotes | activate signal transduction |
| T1013 | 364-392 | http://purl.obolibrary.org/obo/GO_1904263 | denotes | activate signal transduction |
| T1021 | 380-392 | http://purl.obolibrary.org/obo/GO_0009293 | denotes | transduction |
| T1020 | 373-401 | http://purl.obolibrary.org/obo/GO_0035556 | denotes | signal transduction pathways |
| T1019 | 373-401 | http://purl.obolibrary.org/obo/GO_0036499 | denotes | signal transduction pathways |
| T1018 | 373-401 | http://purl.obolibrary.org/obo/GO_0036500 | denotes | signal transduction pathways |
| T1017 | 373-401 | http://purl.obolibrary.org/obo/GO_0036498 | denotes | signal transduction pathways |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1047 | 330-334 | http://purl.obolibrary.org/obo/GO_0018995 | denotes | host |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T926 | 60-256 | Sentence | denotes | Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). |
| T18 | 60-256 | Sentence | denotes | Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1037 | 12-28 | http://purl.bioontology.org/ontology/ICD10/D84.9 | denotes | immunodeficiency |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2786 | 350-363 | Regulation | denotes | MTb infection |
| T2768 | 113-117 | Protein | denotes | PRRs |
| T2765 | 283-292 | Protein | denotes | cytokines |
| T2762 | 90-118 | Protein | denotes | recognition receptors (PRRs) |
| T2759 | 350-353 | Protein | denotes | MTb |
| T2746 | 129-151 | Entity | denotes | mononuclear phagocytes |
| T2727 | 122-125 | Protein | denotes | MTb |
| T2709 | 6-49 | Protein | denotes | human immunodeficiency virus type 1 (HIV-1) |
| T2705 | 297-316 | Protein | denotes | chemokines produced |
| R2152 | T2759 | T2786 | themeOf | MTb,MTb infection |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2023 | 393-401 | NNS | denotes | pathways |
| T2022 | 380-392 | NN | denotes | transduction |
| T2021 | 373-379 | NN | denotes | signal |
| T2020 | 364-372 | VBP | denotes | activate |
| T2019 | 354-363 | NN | denotes | infection |
| T2018 | 350-353 | NNP | denotes | MTb |
| T2017 | 347-349 | TO | denotes | to |
| T2016 | 338-346 | NN | denotes | response |
| T2015 | 335-337 | IN | denotes | in |
| T2014 | 330-334 | NN | denotes | host |
| T2013 | 324-329 | JJ | denotes | human |
| T2012 | 320-323 | DT | denotes | the |
| T2011 | 317-319 | IN | denotes | by |
| T2010 | 308-316 | VBN | denotes | produced |
| T2009 | 297-307 | NNS | denotes | chemokines |
| T2008 | 293-296 | CC | denotes | and |
| T2007 | 283-292 | NNS | denotes | cytokines |
| T2006 | 270-282 | JJ | denotes | inflammatory |
| T2005 | 268-269 | , | denotes | , |
| T2004 | 257-268 | RB | denotes | Furthermore |
| T2003 | 255-256 | . | denotes | . |
| T2002 | 254-255 | -RRB- | denotes | ) |
| T2001 | 253-254 | NNP | denotes | ] |
| T2000 | 252-253 | CD | denotes | 3 |
| T1999 | 251-252 | NNP | denotes | [ |
| T1998 | 248-250 | IN | denotes | in |
| T1997 | 239-247 | VBN | denotes | reviewed |
| T1996 | 238-239 | -LRB- | denotes | ( |
| T1995 | 234-237 | NNP | denotes | LTR |
| T1994 | 225-233 | JJ | denotes | proviral |
| T1993 | 221-224 | DT | denotes | the |
| T1992 | 216-220 | IN | denotes | from |
| T1991 | 202-215 | NN | denotes | transcription |
| T1990 | 195-201 | VBP | denotes | induce |
| T1989 | 186-194 | RB | denotes | directly |
| T1988 | 181-185 | WDT | denotes | that |
| T1987 | 172-180 | NNS | denotes | cascades |
| T1986 | 162-171 | VBG | denotes | signaling |
| T1985 | 152-161 | VBZ | denotes | activates |
| T1984 | 141-151 | NNS | denotes | phagocytes |
| T1983 | 129-140 | NN | denotes | mononuclear |
| T1982 | 126-128 | IN | denotes | on |
| T1981 | 122-125 | NNP | denotes | MTb |
| T1980 | 119-121 | IN | denotes | by |
| T1979 | 117-118 | -RRB- | denotes | ) |
| T1978 | 113-117 | NNS | denotes | PRRs |
| T1977 | 112-113 | -LRB- | denotes | ( |
| T1976 | 102-111 | NNS | denotes | receptors |
| T1975 | 90-101 | NN | denotes | recognition |
| T1974 | 81-89 | NN | denotes | pathogen |
| T1973 | 78-80 | IN | denotes | of |
| T1972 | 67-77 | NN | denotes | engagement |
| T1971 | 60-66 | NNP | denotes | Direct |
| T1970 | 58-59 | . | denotes | . |
| T1969 | 57-58 | NNP | denotes | ] |
| T1968 | 56-57 | CD | denotes | 2 |
| T1967 | 55-56 | NNP | denotes | [ |
| T1966 | 53-54 | , | denotes | , |
| T1965 | 52-53 | NNP | denotes | ] |
| T1964 | 51-52 | CD | denotes | 1 |
| T1963 | 50-51 | NN | denotes | [ |
| T1962 | 48-49 | -RRB- | denotes | ) |
| T1961 | 43-48 | NN | denotes | HIV-1 |
| T1960 | 42-43 | -LRB- | denotes | ( |
| T1959 | 40-41 | CD | denotes | 1 |
| T1958 | 35-39 | NN | denotes | type |
| T1957 | 29-34 | NN | denotes | virus |
| T1956 | 12-28 | NN | denotes | immunodeficiency |
| T1955 | 6-11 | JJ | denotes | human |
| T1954 | 1-5 | IN | denotes | with |
| R1452 | T2010 | T2009 | acl | produced,chemokines |
| R1454 | T2011 | T2010 | agent | by,produced |
| R1455 | T2012 | T2014 | det | the,host |
| R1457 | T2013 | T2014 | amod | human,host |
| R1458 | T2014 | T2011 | pobj | host,by |
| R1459 | T2015 | T2010 | prep | in,produced |
| R1461 | T2016 | T2015 | pobj | response,in |
| R1462 | T2017 | T2016 | prep | to,response |
| R1463 | T2018 | T2020 | dep | MTb,activate |
| R1465 | T2019 | T2020 | compound | infection,activate |
| R1466 | T2020 | T2020 | ROOT | activate,activate |
| R1467 | T2021 | T2023 | nmod | signal,pathways |
| R1468 | T2022 | T2023 | compound | transduction,pathways |
| R1469 | T2023 | T2020 | dobj | pathways,activate |
| R1557 | T1978 | T1976 | appos | PRRs,receptors |
| R1561 | T1979 | T1976 | punct | ),receptors |
| R1562 | T1980 | T1972 | prep | by,engagement |
| R1563 | T1981 | T1980 | pobj | MTb,by |
| R1564 | T1982 | T1972 | prep | on,engagement |
| R1565 | T1983 | T1984 | compound | mononuclear,phagocytes |
| R1571 | T1984 | T1982 | pobj | phagocytes,on |
| R1574 | T1985 | T1985 | ROOT | activates,activates |
| R1577 | T1986 | T1985 | xcomp | signaling,activates |
| R1581 | T1987 | T1986 | dobj | cascades,signaling |
| R1585 | T1988 | T1990 | nsubj | that,induce |
| R1589 | T1989 | T1990 | advmod | directly,induce |
| R1594 | T1990 | T1987 | relcl | induce,cascades |
| R1598 | T1991 | T1990 | dobj | transcription,induce |
| R1601 | T1992 | T1990 | prep | from,induce |
| R1605 | T1993 | T1995 | det | the,LTR |
| R1610 | T1994 | T1995 | compound | proviral,LTR |
| R1464 | T1955 | T1956 | amod | human,immunodeficiency |
| R1471 | T1956 | T1957 | compound | immunodeficiency,virus |
| R1475 | T1957 | T1958 | compound | virus,type |
| R1479 | T1958 | T1954 | pobj | type,with |
| R1484 | T1959 | T1958 | nummod | 1,type |
| R1487 | T1960 | T1958 | punct | (,type |
| R1492 | T1961 | T1958 | appos | HIV-1,type |
| R1428 | T1995 | T1992 | pobj | LTR,from |
| R1430 | T1996 | T1995 | punct | (,LTR |
| R1432 | T1997 | T1995 | acl | reviewed,LTR |
| R1433 | T1998 | T1997 | prep | in,reviewed |
| R1434 | T1999 | T1998 | pobj | [,in |
| R1436 | T2000 | T2001 | nummod | 3,] |
| R1438 | T2001 | T1999 | appos | ],[ |
| R1440 | T2002 | T1999 | punct | ),[ |
| R1441 | T2003 | T1985 | punct | .,activates |
| R1443 | T2004 | T2020 | advmod | Furthermore,activate |
| R1444 | T2005 | T2020 | punct | ",",activate |
| R1446 | T2006 | T2007 | amod | inflammatory,cytokines |
| R1447 | T2007 | T2020 | nsubj | cytokines,activate |
| R1448 | T2008 | T2007 | cc | and,cytokines |
| R1450 | T2009 | T2007 | conj | chemokines,cytokines |
| R1496 | T1962 | T1958 | punct | ),type |
| R1500 | T1963 | T1965 | nmod | [,] |
| R1504 | T1964 | T1965 | nummod | 1,] |
| R1510 | T1966 | T1965 | punct | ",",] |
| R1515 | T1967 | T1969 | nmod | [,] |
| R1522 | T1968 | T1969 | nummod | 2,] |
| R1527 | T1969 | T1965 | appos | ],] |
| R1534 | T1971 | T1972 | amod | Direct,engagement |
| R1539 | T1972 | T1985 | nsubj | engagement,activates |
| R1542 | T1973 | T1972 | prep | of,engagement |
| R1546 | T1974 | T1975 | compound | pathogen,recognition |
| R1550 | T1975 | T1976 | compound | recognition,receptors |
| R1554 | T1976 | T1973 | pobj | receptors,of |
| R1556 | T1977 | T1976 | punct | (,receptors |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1880 | 67-77 | Binding | denotes | engagement |
| T1879 | 67-77 | Binding | denotes | engagement |
| T1878 | 113-117 | Protein | denotes | PRRs |
| T1877 | 81-111 | Protein | denotes | pathogen recognition receptors |
| R1391 | T1877 | T1879 | themeOf | pathogen recognition receptors,engagement |
| R1392 | T1878 | T1880 | themeOf | PRRs,engagement |