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PMC:3320587 / 25399-25523 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9197 9-16 VB denotes knocked
T9196 6-8 PRP denotes we
T9195 4-5 -COMMA- denotes ,
T9194 0-4 RB denotes Next
T9218 122-123 -RRB- denotes ]
T9217 120-122 CD denotes 31
T9216 119-120 -LRB- denotes [
T9215 112-118 NN denotes levels
T9214 104-111 NN denotes protein
T9213 98-103 NN denotes NFAT5
T9212 94-97 CC denotes and
T9211 89-93 NN denotes mRNA
T9210 83-88 NN denotes NFAT5
T9209 78-82 CC denotes both
T9208 67-77 VB denotes suppresses
T9207 62-66 WDT denotes that
T9206 56-61 NN denotes siRNA
T9205 53-55 DT denotes an
T9204 47-52 VB denotes using
T9203 43-46 NN denotes MDM
T9202 40-42 IN denotes in
T9201 33-39 NN denotes levels
T9200 28-32 NN denotes mRNA
T9199 22-27 NN denotes NFAT5
T9198 17-21 RB denotes down
R7210 T9196 T9197 arg1Of we,knocked
R7211 T9197 T9194 arg1Of knocked,Next
R7212 T9197 T9195 arg1Of knocked,","
R7213 T9197 T9198 arg1Of knocked,down
R7214 T9201 T9197 arg2Of levels,knocked
R7215 T9201 T9199 arg1Of levels,NFAT5
R7216 T9201 T9200 arg1Of levels,mRNA
R7217 T9201 T9202 arg1Of levels,in
R7218 T9201 T9204 arg1Of levels,using
R7219 T9203 T9202 arg2Of MDM,in
R7220 T9206 T9204 arg2Of siRNA,using
R7221 T9206 T9205 arg1Of siRNA,an
R7222 T9206 T9207 arg1Of siRNA,that
R7223 T9206 T9208 arg1Of siRNA,suppresses
R7224 T9211 T9210 arg1Of mRNA,NFAT5
R7225 T9211 T9212 arg1Of mRNA,and
R7226 T9212 T9208 arg2Of and,suppresses
R7227 T9212 T9209 arg1Of and,both
R7228 T9212 T9216 arg1Of and,[
R7229 T9215 T9212 arg2Of levels,and
R7230 T9215 T9213 arg1Of levels,NFAT5
R7231 T9215 T9214 arg1Of levels,protein
R7232 T9217 T9216 arg2Of 31,[
R7233 T9218 T9216 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8911 98-103 Protein denotes NFAT5
T8910 83-88 Protein denotes NFAT5
T8909 22-27 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9463 98-103 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9462 83-88 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9461 22-27 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

sentences

Id Subject Object Predicate Lexical cue
T8857 0-124 Sentence denotes Next, we knocked down NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31].
T157 0-124 Sentence denotes Next, we knocked down NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31].

simple1

Id Subject Object Predicate Lexical cue
T8978 98-103 Protein denotes NFAT5
T8977 83-88 Protein denotes NFAT5
T8976 22-27 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10183 9-16 Negative_regulation denotes knocked
T10182 33-39 Transcription denotes levels
T10181 112-118 Transcription denotes levels
T10180 67-77 Negative_regulation denotes suppresses
T10165 98-103 Protein denotes NFAT5
T10164 83-88 Protein denotes NFAT5
T10163 22-27 Protein denotes NFAT5
R8045 T10163 T10183 themeOf NFAT5,knocked
R8046 T10163 T10182 themeOf NFAT5,levels
R8047 T10164 T10180 themeOf NFAT5,suppresses
R8048 T10164 T10181 themeOf NFAT5,levels
R8049 T10165 T10180 themeOf NFAT5,suppresses
R8050 T10165 T10181 themeOf NFAT5,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9561 83-88 Protein denotes NFAT5
T9560 22-27 Protein denotes NFAT5
T9562 98-103 Protein denotes NFAT5
T9580 17-21 Negative_regulation denotes down
R7519 T9560 T9580 themeOf NFAT5,down

DLUT931

Id Subject Object Predicate Lexical cue
T9538 33-39 Transcription denotes levels
T9517 98-103 Protein denotes NFAT5
T9516 83-88 Protein denotes NFAT5
T9515 22-27 Protein denotes NFAT5
R7495 T9515 T9538 themeOf NFAT5,levels

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10241 98-123 Protein denotes NFAT5 protein levels [31]
T10234 98-103 Protein denotes NFAT5
T10232 83-88 Protein denotes NFAT5
T10231 43-46 Protein denotes MDM
T10223 83-93 Protein denotes NFAT5 mRNA
T10221 22-27 Protein denotes NFAT5
T10206 22-123 Protein denotes NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31]

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9899 123-124 . denotes .
T9898 122-123 NNP denotes ]
T9897 120-122 CD denotes 31
T9896 119-120 NNP denotes [
T9895 112-118 NNS denotes levels
T9894 104-111 NN denotes protein
T9893 98-103 NNP denotes NFAT5
T9892 94-97 CC denotes and
T9891 89-93 NNP denotes mRNA
T9890 83-88 CD denotes NFAT5
T9889 78-82 DT denotes both
T9888 67-77 VBZ denotes suppresses
T9887 62-66 WDT denotes that
T9886 56-61 NN denotes siRNA
T9885 53-55 DT denotes an
T9884 47-52 VBG denotes using
T9883 43-46 NNP denotes MDM
T9882 40-42 IN denotes in
T9881 33-39 NNS denotes levels
T9880 28-32 JJ denotes mRNA
T9879 22-27 CD denotes NFAT5
T9878 17-21 RP denotes down
T9877 9-16 VBD denotes knocked
T9876 6-8 PRP denotes we
T9875 4-5 , denotes ,
T9874 0-4 JJ denotes Next
R7763 T9874 T9877 advmod Next,knocked
R7764 T9875 T9877 punct ",",knocked
R7765 T9876 T9877 nsubj we,knocked
R7766 T9877 T9877 ROOT knocked,knocked
R7767 T9878 T9877 prt down,knocked
R7768 T9879 T9881 nummod NFAT5,levels
R7769 T9880 T9881 amod mRNA,levels
R7770 T9881 T9877 dobj levels,knocked
R7771 T9882 T9877 prep in,knocked
R7772 T9883 T9882 pobj MDM,in
R7773 T9884 T9877 advcl using,knocked
R7774 T9885 T9886 det an,siRNA
R7775 T9886 T9884 dobj siRNA,using
R7776 T9887 T9888 nsubj that,suppresses
R7777 T9888 T9886 relcl suppresses,siRNA
R7778 T9889 T9891 preconj both,mRNA
R7779 T9890 T9891 nummod NFAT5,mRNA
R7780 T9891 T9895 nmod mRNA,levels
R7781 T9892 T9891 cc and,mRNA
R7782 T9893 T9891 conj NFAT5,mRNA
R7783 T9894 T9895 compound protein,levels
R7784 T9895 T9888 dobj levels,suppresses
R7785 T9896 T9898 nmod [,]
R7786 T9897 T9898 nummod 31,]
R7787 T9898 T9895 appos ],levels
R7788 T9899 T9877 punct .,knocked

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9604 67-77 Negative_regulation denotes suppresses
T9603 67-77 Negative_regulation denotes suppresses
T9602 17-21 Negative_regulation denotes down
T9601 98-111 Protein denotes NFAT5 protein
T9600 83-93 Protein denotes NFAT5 mRNA
T9599 22-32 Protein denotes NFAT5 mRNA
R7530 T9599 T9602 themeOf NFAT5 mRNA,down
R7531 T9600 T9603 themeOf NFAT5 mRNA,suppresses
R7532 T9601 T9604 themeOf NFAT5 protein,suppresses

testone

Id Subject Object Predicate Lexical cue
T8800 67-77 Negative_regulation denotes suppresses
T8799 9-21 Negative_regulation denotes knocked down
T8786 98-103 Protein denotes NFAT5
T8785 83-88 Protein denotes NFAT5
T8784 22-27 Protein denotes NFAT5
R6986 T8784 T8799 themeOf NFAT5,knocked down
R6987 T8785 T8800 themeOf NFAT5,suppresses
R6988 T8786 T8800 themeOf NFAT5,suppresses

test3

Id Subject Object Predicate Lexical cue
T8838 98-103 Protein denotes NFAT5
T8837 83-88 Protein denotes NFAT5
T8836 22-27 Protein denotes NFAT5
T8814 98-103 Protein denotes NFAT5
T8813 83-88 Protein denotes NFAT5
T8812 22-27 Protein denotes NFAT5