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PMC:3320587 / 24935-25192 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9160 250-256 NN denotes region
T9159 242-249 NN denotes binding
T9158 230-241 NN denotes co-receptor
T9157 221-229 NN denotes envelope
T9156 212-220 NN denotes HIV-1Lai
T9155 208-211 DT denotes the
T9154 205-207 IN denotes of
T9153 199-204 NN denotes place
T9152 196-198 IN denotes in
T9151 189-195 NN denotes region
T9150 181-188 NN denotes binding
T9149 169-180 NN denotes co-receptor
T9148 160-168 NN denotes envelope
T9147 151-159 JJ denotes HIV-1Bal
T9146 147-150 DT denotes the
T9145 144-146 IN denotes of
T9144 131-143 NN denotes substitution
T9143 127-130 DT denotes the
T9142 123-126 IN denotes for
T9141 116-122 IN denotes except
T9140 110-115 NN denotes clone
T9139 99-109 JJ denotes infectious
T9138 90-98 NN denotes HIV-1Lai
T9137 81-89 JJ denotes parental
T9136 77-80 DT denotes the
T9135 74-76 IN denotes of
T9134 65-73 NN denotes sequence
T9133 58-64 JJ denotes entire
T9132 54-57 DT denotes the
T9131 50-53 IN denotes for
T9130 41-49 JJ denotes isogenic
T9129 38-40 VB denotes is
T9128 32-37 NN denotes clone
T9127 21-31 JJ denotes infectious
T9126 4-20 NN denotes HIV-1Lai/Bal-Env
T9125 0-3 DT denotes The
R7142 T9128 T9125 arg1Of clone,The
R7143 T9128 T9126 arg1Of clone,HIV-1Lai/Bal-Env
R7144 T9128 T9127 arg1Of clone,infectious
R7145 T9128 T9129 arg1Of clone,is
R7146 T9128 T9130 arg1Of clone,isogenic
R7147 T9130 T9129 arg2Of isogenic,is
R7148 T9130 T9131 arg1Of isogenic,for
R7149 T9130 T9142 arg1Of isogenic,for
R7150 T9134 T9131 arg2Of sequence,for
R7151 T9134 T9132 arg1Of sequence,the
R7152 T9134 T9133 arg1Of sequence,entire
R7153 T9134 T9135 arg1Of sequence,of
R7154 T9140 T9135 arg2Of clone,of
R7155 T9140 T9136 arg1Of clone,the
R7156 T9140 T9137 arg1Of clone,parental
R7157 T9140 T9138 arg1Of clone,HIV-1Lai
R7158 T9140 T9139 arg1Of clone,infectious
R7159 T9142 T9141 arg1Of for,except
R7160 T9144 T9142 arg2Of substitution,for
R7161 T9144 T9143 arg1Of substitution,the
R7162 T9144 T9145 arg1Of substitution,of
R7163 T9144 T9152 arg1Of substitution,in
R7164 T9151 T9145 arg2Of region,of
R7165 T9151 T9146 arg1Of region,the
R7166 T9151 T9147 arg1Of region,HIV-1Bal
R7167 T9151 T9148 arg1Of region,envelope
R7168 T9151 T9149 arg1Of region,co-receptor
R7169 T9151 T9150 arg1Of region,binding
R7170 T9153 T9152 arg2Of place,in
R7171 T9153 T9154 arg1Of place,of
R7172 T9160 T9154 arg2Of region,of
R7173 T9160 T9155 arg1Of region,the
R7174 T9160 T9156 arg1Of region,HIV-1Lai
R7175 T9160 T9157 arg1Of region,envelope
R7176 T9160 T9158 arg1Of region,co-receptor
R7177 T9160 T9159 arg1Of region,binding

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8907 221-229 Protein denotes envelope
T8906 160-168 Protein denotes envelope
T8905 17-20 Protein denotes Env

GO-MF

Id Subject Object Predicate Lexical cue
T8933 242-249 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T8932 181-188 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T8931 233-249 http://purl.obolibrary.org/obo/GO_0005102 denotes receptor binding
T8930 172-188 http://purl.obolibrary.org/obo/GO_0005102 denotes receptor binding
T8929 230-249 http://purl.obolibrary.org/obo/GO_0039706 denotes co-receptor binding
T8928 169-188 http://purl.obolibrary.org/obo/GO_0039706 denotes co-receptor binding

GO-CC

Id Subject Object Predicate Lexical cue
T8936 221-229 http://purl.obolibrary.org/obo/GO_0009274 denotes envelope
T8935 160-168 http://purl.obolibrary.org/obo/GO_0009274 denotes envelope

sentences

Id Subject Object Predicate Lexical cue
T8855 0-257 Sentence denotes The HIV-1Lai/Bal-Env infectious clone is isogenic for the entire sequence of the parental HIV-1Lai infectious clone except for the substitution of the HIV-1Bal envelope co-receptor binding region in place of the HIV-1Lai envelope co-receptor binding region.
T155 0-257 Sentence denotes The HIV-1Lai/Bal-Env infectious clone is isogenic for the entire sequence of the parental HIV-1Lai infectious clone except for the substitution of the HIV-1Bal envelope co-receptor binding region in place of the HIV-1Lai envelope co-receptor binding region.

simple1

Id Subject Object Predicate Lexical cue
T8974 221-229 Protein denotes envelope
T8973 160-168 Protein denotes envelope
T8972 17-20 Protein denotes Env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10161 221-229 Protein denotes envelope
T10160 160-168 Protein denotes envelope
T10159 17-20 Protein denotes Env

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9558 221-229 Protein denotes envelope
T9557 160-168 Protein denotes envelope
T9556 17-20 Protein denotes Env
T9579 242-249 Binding denotes binding
T9578 181-188 Binding denotes binding
R7517 T9557 T9578 themeOf envelope,binding
R7518 T9558 T9579 themeOf envelope,binding

DLUT931

Id Subject Object Predicate Lexical cue
T9537 242-249 Binding denotes binding
T9536 181-188 Binding denotes binding
T9535 131-143 Negative_regulation denotes substitution
T9513 221-229 Protein denotes envelope
T9512 160-168 Protein denotes envelope
T9511 17-20 Protein denotes Env
R7492 T9513 T9537 themeOf envelope,binding
R7493 T9513 T9536 themeOf envelope,binding
R7494 T9513 T9536 themeOf envelope,binding
R7508 T9536 T9535 themeOf binding,substitution
R7509 T9536 T9535 themeOf binding,substitution
R7510 T9536 T9535 themeOf binding,substitution
R7486 T9511 T9536 themeOf Env,binding
R7488 T9512 T9535 themeOf envelope,substitution
R7487 T9511 T9536 themeOf Env,binding
R7489 T9512 T9536 themeOf envelope,binding
R7490 T9512 T9537 themeOf envelope,binding
R7491 T9512 T9536 themeOf envelope,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10249 169-180 Protein denotes co-receptor
T10243 13-31 Protein denotes Bal-Env infectious
T10215 230-241 Protein denotes co-receptor
T10213 144-168 Protein denotes of the HIV-1Bal envelope
T10212 208-249 Protein denotes the HIV-1Lai envelope co-receptor binding
T10208 13-31 Protein denotes Bal-Env infectious

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9837 256-257 . denotes .
T9836 250-256 NN denotes region
T9835 242-249 JJ denotes binding
T9834 230-241 NN denotes co-receptor
T9833 221-229 NN denotes envelope
T9832 212-220 JJ denotes HIV-1Lai
T9831 208-211 DT denotes the
T9830 205-207 IN denotes of
T9829 199-204 NN denotes place
T9828 196-198 IN denotes in
T9827 189-195 NN denotes region
T9826 181-188 JJ denotes binding
T9825 169-180 NN denotes co-receptor
T9824 160-168 NN denotes envelope
T9823 151-159 JJ denotes HIV-1Bal
T9822 147-150 DT denotes the
T9821 144-146 IN denotes of
T9820 131-143 NN denotes substitution
T9819 127-130 DT denotes the
T9818 123-126 IN denotes for
T9817 116-122 IN denotes except
T9816 110-115 NN denotes clone
T9815 99-109 JJ denotes infectious
T9814 90-98 JJ denotes HIV-1Lai
T9813 81-89 JJ denotes parental
T9812 77-80 DT denotes the
T9811 74-76 IN denotes of
T9810 65-73 NN denotes sequence
T9809 58-64 JJ denotes entire
T9808 54-57 DT denotes the
T9807 50-53 IN denotes for
T9806 41-49 JJ denotes isogenic
T9805 38-40 VBZ denotes is
T9804 32-37 NN denotes clone
T9803 21-31 JJ denotes infectious
T9802 13-20 NNP denotes Bal-Env
T9801 12-13 NN denotes /
T9800 4-12 JJ denotes HIV-1Lai
T9799 0-3 DT denotes The
R7688 T9799 T9804 det The,clone
R7689 T9800 T9801 compound HIV-1Lai,/
R7690 T9801 T9804 nmod /,clone
R7691 T9802 T9804 amod Bal-Env,clone
R7692 T9803 T9804 amod infectious,clone
R7693 T9804 T9805 nsubj clone,is
R7694 T9805 T9805 ROOT is,is
R7695 T9806 T9805 acomp isogenic,is
R7696 T9807 T9806 prep for,isogenic
R7697 T9808 T9810 det the,sequence
R7698 T9809 T9810 amod entire,sequence
R7699 T9810 T9807 pobj sequence,for
R7700 T9811 T9810 prep of,sequence
R7701 T9812 T9816 det the,clone
R7702 T9813 T9816 amod parental,clone
R7703 T9814 T9816 amod HIV-1Lai,clone
R7704 T9815 T9816 amod infectious,clone
R7705 T9816 T9811 pobj clone,of
R7706 T9817 T9810 prep except,sequence
R7707 T9818 T9817 prep for,except
R7708 T9819 T9820 det the,substitution
R7709 T9820 T9818 pobj substitution,for
R7710 T9821 T9820 prep of,substitution
R7711 T9822 T9824 det the,envelope
R7712 T9823 T9824 amod HIV-1Bal,envelope
R7713 T9824 T9827 nmod envelope,region
R7714 T9825 T9827 amod co-receptor,region
R7715 T9826 T9827 amod binding,region
R7716 T9827 T9821 pobj region,of
R7717 T9828 T9820 prep in,substitution
R7718 T9829 T9828 pobj place,in
R7719 T9830 T9829 prep of,place
R7720 T9831 T9836 det the,region
R7721 T9832 T9833 amod HIV-1Lai,envelope
R7722 T9833 T9836 nmod envelope,region
R7723 T9834 T9836 nmod co-receptor,region
R7724 T9835 T9836 amod binding,region
R7725 T9836 T9830 pobj region,of
R7726 T9837 T9805 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9597 212-241 Protein denotes HIV-1Lai envelope co-receptor
T9596 151-195 Protein denotes HIV-1Bal envelope co-receptor binding region

testone

Id Subject Object Predicate Lexical cue
T8782 221-229 Protein denotes envelope
T8781 160-168 Protein denotes envelope
T8780 17-20 Protein denotes Env

test3

Id Subject Object Predicate Lexical cue
T8834 221-229 Protein denotes envelope
T8833 160-168 Protein denotes envelope
T8832 17-20 Protein denotes Env
T8810 221-229 Protein denotes envelope
T8809 160-168 Protein denotes envelope
T8808 17-20 Protein denotes Env