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PMC:3320587 / 24659-24934 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-2795721-98010792 266-268 2795721 denotes 41
22496647-8419644-98010793 271-273 8419644 denotes 46

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9124 273-274 -RRB- denotes ]
T9123 271-273 CD denotes 46
T9122 270-271 -LRB- denotes [
T9121 269-270 CD denotes –
T9120 268-269 -RRB- denotes ]
T9119 266-268 CD denotes 41
T9118 265-266 -LRB- denotes [
T9117 253-264 NN denotes replication
T9116 247-252 JJ denotes viral
T9115 235-246 JJ denotes full-length
T9114 232-234 IN denotes of
T9113 224-231 NN denotes context
T9112 220-223 DT denotes the
T9111 217-219 IN denotes in
T9110 206-216 NN denotes regulation
T9109 202-205 NN denotes LTR
T9108 193-201 VB denotes examined
T9107 188-192 WDT denotes that
T9106 179-187 NN denotes findings
T9105 170-178 NN denotes research
T9104 161-169 JJ denotes previous
T9103 158-160 IN denotes of
T9102 150-157 NN denotes context
T9101 143-149 JJ denotes proper
T9100 139-142 DT denotes the
T9099 136-138 IN denotes in
T9098 124-135 VB denotes interpreted
T9097 121-123 VB denotes be
T9096 115-120 MD denotes could
T9095 103-114 NN denotes replication
T9094 97-102 NN denotes HIV-1
T9093 85-96 JJ denotes MTb-induced
T9092 82-84 IN denotes in
T9091 76-81 NN denotes NFAT5
T9090 72-75 CC denotes and
T9089 66-71 NN denotes NF-κB
T9088 63-65 IN denotes of
T9087 57-62 NN denotes roles
T9086 53-56 DT denotes the
T9085 50-52 IN denotes of
T9084 41-49 NN denotes analysis
T9083 37-40 PRP-DOLLAR- denotes our
T9082 32-36 IN denotes that
T9081 25-31 VB denotes ensure
T9080 22-24 TO denotes to
T9079 13-21 NN denotes approach
T9078 8-12 DT denotes this
T9077 3-7 VB denotes used
T9076 0-2 PRP denotes We
R7091 T9076 T9077 arg1Of We,used
R7092 T9076 T9081 arg1Of We,ensure
R7093 T9079 T9077 arg2Of approach,used
R7094 T9079 T9078 arg1Of approach,this
R7095 T9081 T9077 arg3Of ensure,used
R7096 T9081 T9080 arg1Of ensure,to
R7097 T9084 T9083 arg1Of analysis,our
R7098 T9084 T9085 arg1Of analysis,of
R7099 T9084 T9096 arg1Of analysis,could
R7100 T9084 T9097 arg1Of analysis,be
R7101 T9084 T9098 arg2Of analysis,interpreted
R7102 T9087 T9085 arg2Of roles,of
R7103 T9087 T9086 arg1Of roles,the
R7104 T9087 T9088 arg1Of roles,of
R7105 T9089 T9090 arg1Of NF-κB,and
R7106 T9090 T9088 arg2Of and,of
R7107 T9090 T9092 arg1Of and,in
R7108 T9091 T9090 arg2Of NFAT5,and
R7109 T9095 T9092 arg2Of replication,in
R7110 T9095 T9093 arg1Of replication,MTb-induced
R7111 T9095 T9094 arg1Of replication,HIV-1
R7112 T9098 T9081 arg2Of interpreted,ensure
R7113 T9098 T9082 arg1Of interpreted,that
R7114 T9098 T9096 arg2Of interpreted,could
R7115 T9098 T9097 arg2Of interpreted,be
R7116 T9098 T9099 arg1Of interpreted,in
R7117 T9098 T9111 arg1Of interpreted,in
R7118 T9102 T9099 arg2Of context,in
R7119 T9102 T9100 arg1Of context,the
R7120 T9102 T9101 arg1Of context,proper
R7121 T9102 T9103 arg1Of context,of
R7122 T9106 T9103 arg2Of findings,of
R7123 T9106 T9104 arg1Of findings,previous
R7124 T9106 T9105 arg1Of findings,research
R7125 T9106 T9107 arg1Of findings,that
R7126 T9106 T9108 arg1Of findings,examined
R7127 T9110 T9108 arg2Of regulation,examined
R7128 T9110 T9109 arg1Of regulation,LTR
R7129 T9113 T9111 arg2Of context,in
R7130 T9113 T9112 arg1Of context,the
R7131 T9113 T9114 arg1Of context,of
R7132 T9117 T9114 arg2Of replication,of
R7133 T9117 T9115 arg1Of replication,full-length
R7134 T9117 T9116 arg1Of replication,viral
R7135 T9119 T9118 arg2Of 41,[
R7136 T9120 T9118 arg3Of ],[
R7137 T9121 T9111 arg3Of –,in
R7138 T9121 T9118 arg1Of –,[
R7139 T9121 T9122 arg1Of –,[
R7140 T9123 T9122 arg2Of 46,[
R7141 T9124 T9122 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8904 76-81 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9460 76-81 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T8927 247-264 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T8926 247-264 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T8925 206-216 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

sentences

Id Subject Object Predicate Lexical cue
T8854 0-275 Sentence denotes We used this approach to ensure that our analysis of the roles of NF-κB and NFAT5 in MTb-induced HIV-1 replication could be interpreted in the proper context of previous research findings that examined LTR regulation in the context of full-length viral replication [41]–[46].
T154 0-275 Sentence denotes We used this approach to ensure that our analysis of the roles of NF-κB and NFAT5 in MTb-induced HIV-1 replication could be interpreted in the proper context of previous research findings that examined LTR regulation in the context of full-length viral replication [41]–[46].

simple1

Id Subject Object Predicate Lexical cue
T8971 76-81 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10158 76-81 Protein denotes NFAT5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9555 76-81 Protein denotes NFAT5

DLUT931

Id Subject Object Predicate Lexical cue
T9510 76-81 Protein denotes NFAT5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10237 66-71 Protein denotes NF-κB
T10214 85-96 Protein denotes MTb-induced
T10211 76-81 Protein denotes NFAT5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9798 274-275 . denotes .
T9797 273-274 NNP denotes ]
T9796 271-273 CD denotes 46
T9795 270-271 NNP denotes [
T9794 268-269 NNP denotes ]
T9793 266-268 CD denotes 41
T9792 265-266 NNP denotes [
T9791 253-264 NN denotes replication
T9751 3-7 VBD denotes used
T9750 0-2 PRP denotes We
T9769 103-114 NN denotes replication
T9768 97-102 NNP denotes HIV-1
T9767 85-96 NNP denotes MTb-induced
T9766 82-84 IN denotes in
T9765 76-81 NNP denotes NFAT5
T9764 72-75 CC denotes and
T9763 66-71 NNP denotes NF-κB
T9762 63-65 IN denotes of
T9761 57-62 NNS denotes roles
T9760 53-56 DT denotes the
T9759 50-52 IN denotes of
T9758 41-49 NN denotes analysis
T9757 37-40 PRP$ denotes our
T9756 32-36 IN denotes that
T9755 25-31 VB denotes ensure
T9754 22-24 TO denotes to
T9753 13-21 NN denotes approach
T9752 8-12 DT denotes this
T9790 247-252 JJ denotes viral
T9789 235-246 JJ denotes full-length
T9788 232-234 IN denotes of
T9787 224-231 NN denotes context
T9786 220-223 DT denotes the
T9785 217-219 IN denotes in
T9784 206-216 NN denotes regulation
T9783 202-205 NNP denotes LTR
T9782 193-201 VBD denotes examined
T9781 188-192 WDT denotes that
T9780 179-187 NNS denotes findings
T9779 170-178 NN denotes research
T9778 161-169 JJ denotes previous
T9777 158-160 IN denotes of
T9776 150-157 NN denotes context
T9775 143-149 JJ denotes proper
T9774 139-142 DT denotes the
T9773 136-138 IN denotes in
T9772 124-135 VBN denotes interpreted
T9771 121-123 VB denotes be
T9770 115-120 MD denotes could
R7639 T9750 T9751 nsubj We,used
R7640 T9751 T9751 ROOT used,used
R7641 T9752 T9753 det this,approach
R7642 T9753 T9751 dobj approach,used
R7643 T9754 T9755 aux to,ensure
R7644 T9755 T9751 xcomp ensure,used
R7645 T9756 T9772 mark that,interpreted
R7646 T9757 T9758 poss our,analysis
R7647 T9758 T9772 nsubjpass analysis,interpreted
R7648 T9759 T9758 prep of,analysis
R7649 T9760 T9761 det the,roles
R7650 T9761 T9759 pobj roles,of
R7651 T9762 T9761 prep of,roles
R7652 T9763 T9762 pobj NF-κB,of
R7653 T9764 T9763 cc and,NF-κB
R7654 T9765 T9763 conj NFAT5,NF-κB
R7655 T9766 T9761 prep in,roles
R7656 T9767 T9768 compound MTb-induced,HIV-1
R7657 T9768 T9769 compound HIV-1,replication
R7658 T9769 T9766 pobj replication,in
R7659 T9770 T9772 aux could,interpreted
R7660 T9771 T9772 auxpass be,interpreted
R7661 T9772 T9755 ccomp interpreted,ensure
R7662 T9773 T9772 prep in,interpreted
R7663 T9774 T9776 det the,context
R7664 T9775 T9776 amod proper,context
R7665 T9776 T9773 pobj context,in
R7666 T9777 T9776 prep of,context
R7667 T9778 T9780 amod previous,findings
R7668 T9779 T9780 compound research,findings
R7669 T9780 T9777 pobj findings,of
R7670 T9781 T9782 nsubj that,examined
R7671 T9782 T9780 relcl examined,findings
R7672 T9783 T9784 compound LTR,regulation
R7673 T9784 T9782 dobj regulation,examined
R7674 T9785 T9784 prep in,regulation
R7675 T9786 T9787 det the,context
R7676 T9787 T9785 pobj context,in
R7677 T9788 T9787 prep of,context
R7678 T9789 T9791 amod full-length,replication
R7679 T9790 T9791 amod viral,replication
R7680 T9791 T9788 pobj replication,of
R7681 T9792 T9794 compound [,]
R7682 T9793 T9794 compound 41,]
R7683 T9794 T9787 appos ],context
R7684 T9795 T9797 nmod [,]
R7685 T9796 T9797 nummod 46,]
R7686 T9797 T9794 appos ],]
R7687 T9798 T9751 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9595 85-88 Protein denotes MTb
T9594 76-81 Protein denotes NFAT5
T9593 66-71 Protein denotes NF-κB

testone

Id Subject Object Predicate Lexical cue
T8779 76-81 Protein denotes NFAT5

test3

Id Subject Object Predicate Lexical cue
T8831 76-81 Protein denotes NFAT5
T8807 76-81 Protein denotes NFAT5