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PMC:3320587 / 23207-23528 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22782 298-301 NN denotes abr
T22781 292-297 JJ denotes on is
T22780 290-292 IN denotes si
T22779 281-290 VB denotes T5 expres
T22778 279-281 VB denotes FA
T22777 269-279 NN denotes ion when N
T22776 264-269 NN denotes nfect
T22775 260-264 WRB denotes co-i
T22774 247-259 NN denotes sence of MTb
T22773 244-247 NN denotes pre
T22772 241-243 IN denotes he
T22771 233-241 NN denotes sed in t
T22770 230-233 DT denotes res
T22769 228-230 IN denotes pp
T22768 218-228 VB denotes icantly su
T22767 205-218 RB denotes ion is signif
T22766 203-205 VB denotes at
T22765 192-203 NN denotes pe B replic
T22764 191-192 NN denotes y
T22763 184-191 NN denotes -1 subt
T22762 179-184 NN denotes ) HIV
T22761 178-179 -RRB- denotes C
T22760 177-178 NN denotes (
T22759 175-176 -LRB- denotes .
T22758 174-175 -RRB- denotes )
T22757 170-174 NN denotes bars
T22756 165-169 JJ denotes grey
T22755 164-165 -LRB- denotes (
T22754 153-163 VB denotes suppressed
T22753 139-152 RB denotes significantly
T22752 134-138 VB denotes were
T22751 129-133 NN denotes mRNA
T22750 123-128 NN denotes NFAT5
T22749 121-122 -RRB- denotes )
T22748 112-121 NN denotes p = 0.021
T22747 111-112 -LRB- denotes (
T22746 99-110 JJ denotes MTb-induced
T22745 95-98 CC denotes and
T22744 93-94 -RRB- denotes )
T22743 84-93 NN denotes p = 0.048
T22742 83-84 -LRB- denotes (
T22741 73-82 VB denotes expressed
T22740 58-72 RB denotes constitutively
T22739 53-57 DT denotes both
T22738 51-52 -COMMA- denotes ,
T22737 46-51 NN denotes siRNA
T22736 31-45 JJ denotes NFAT5-specific
T22735 26-30 IN denotes with
T22734 14-25 VB denotes transfected
T22733 9-13 VB denotes were
T22732 5-8 NN denotes MDM
T22731 0-4 WRB denotes When
R16806 T22732 T22733 arg1Of MDM,were
R16807 T22732 T22734 arg2Of MDM,transfected
R16808 T22734 T22731 arg2Of transfected,When
R16809 T22734 T22733 arg2Of transfected,were
R16810 T22734 T22735 arg1Of transfected,with
R16811 T22737 T22735 arg2Of siRNA,with
R16812 T22737 T22736 arg1Of siRNA,NFAT5-specific
R16813 T22741 T22740 arg1Of expressed,constitutively
R16814 T22741 T22742 arg1Of expressed,(
R16815 T22741 T22745 arg1Of expressed,and
R16816 T22743 T22742 arg2Of p = 0.048,(
R16817 T22744 T22742 arg3Of ),(
R16818 T22746 T22745 arg2Of MTb-induced,and
R16819 T22746 T22747 arg1Of MTb-induced,(
R16820 T22748 T22747 arg2Of p = 0.021,(
R16821 T22749 T22747 arg3Of ),(
R16822 T22751 T22739 arg1Of mRNA,both
R16823 T22751 T22741 arg1Of mRNA,expressed
R16824 T22751 T22746 arg1Of mRNA,MTb-induced
R16825 T22751 T22750 arg1Of mRNA,NFAT5
R16826 T22751 T22752 arg1Of mRNA,were
R16827 T22751 T22754 arg2Of mRNA,suppressed
R16828 T22754 T22731 arg1Of suppressed,When
R16829 T22754 T22738 arg1Of suppressed,","
R16830 T22754 T22752 arg2Of suppressed,were
R16831 T22754 T22753 arg1Of suppressed,significantly
R16832 T22757 T22755 arg2Of bars,(
R16833 T22757 T22756 arg1Of bars,grey
R16834 T22758 T22755 arg3Of ),(
R16835 T22760 T22759 arg2Of (,.
R16836 T22761 T22759 arg3Of C,.
R16837 T22765 T22755 arg1Of pe B replic,(
R16838 T22765 T22759 arg1Of pe B replic,.
R16839 T22765 T22762 arg1Of pe B replic,) HIV
R16840 T22765 T22763 arg1Of pe B replic,-1 subt
R16841 T22765 T22764 arg1Of pe B replic,y
R16842 T22765 T22766 arg1Of pe B replic,at
R16843 T22765 T22768 arg2Of pe B replic,icantly su
R16844 T22768 T22754 arg3Of icantly su,suppressed
R16845 T22768 T22766 arg2Of icantly su,at
R16846 T22768 T22767 arg1Of icantly su,ion is signif
R16847 T22768 T22769 arg1Of icantly su,pp
R16848 T22768 T22775 arg1Of icantly su,co-i
R16849 T22769 T22770 arg1Of pp,res
R16850 T22769 T22772 arg1Of pp,he
R16851 T22771 T22769 arg2Of sed in t,pp
R16852 T22774 T22769 arg3Of sence of MTb,pp
R16853 T22774 T22773 arg1Of sence of MTb,pre
R16854 T22777 T22776 arg1Of ion when N,nfect
R16855 T22777 T22778 arg1Of ion when N,FA
R16856 T22777 T22779 arg2Of ion when N,T5 expres
R16857 T22779 T22775 arg2Of T5 expres,co-i
R16858 T22779 T22778 arg2Of T5 expres,FA
R16859 T22779 T22780 arg1Of T5 expres,si
R16860 T22782 T22780 arg2Of abr,si
R16861 T22782 T22781 arg1Of abr,on is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T22458 278-283 Protein denotes NFAT5
T22457 123-128 Protein denotes NFAT5
T22456 31-36 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22890 278-283 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T22889 123-128 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T22888 31-36 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

sentences

Id Subject Object Predicate Lexical cue
T22404 0-321 Sentence denotes When MDM were transfected with NFAT5-specific siRNA, both constitutively expressed (p = 0.048) and MTb-induced (p = 0.021) NFAT5 mRNA were significantly suppressed (grey bars). (C) HIV-1 subtype B replication is significantly suppressed in the presence of MTb co-infection when NFAT5 expression is abrogated in human MDM.
T145 0-321 Sentence denotes When MDM were transfected with NFAT5-specific siRNA, both constitutively expressed (p = 0.048) and MTb-induced (p = 0.021) NFAT5 mRNA were significantly suppressed (grey bars). (C) HIV-1 subtype B replication is significantly suppressed in the presence of MTb co-infection when NFAT5 expression is abrogated in human MDM.

simple1

Id Subject Object Predicate Lexical cue
T22489 278-283 Protein denotes NFAT5
T22488 123-128 Protein denotes NFAT5
T22487 31-36 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T23513 284-294 Gene_expression denotes expression
T23512 298-307 Negative_regulation denotes abrogated
T23511 73-82 Gene_expression denotes expressed
T23510 99-110 Positive_regulation denotes MTb-induced
T23509 153-163 Negative_regulation denotes suppressed
T23491 278-283 Protein denotes NFAT5
T23490 123-128 Protein denotes NFAT5
T23489 31-36 Protein denotes NFAT5
R17499 T23490 T23511 themeOf NFAT5,expressed
R17500 T23490 T23510 themeOf NFAT5,MTb-induced
R17501 T23490 T23509 themeOf NFAT5,suppressed
R17502 T23491 T23513 themeOf NFAT5,expression
R17511 T23511 T23509 themeOf expressed,suppressed
R17512 T23513 T23512 themeOf expression,abrogated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22991 284-294 Gene_expression denotes expression
T22990 298-307 Negative_regulation denotes abrogated
T22989 99-110 Positive_regulation denotes MTb-induced
T22988 153-163 Negative_regulation denotes suppressed
T22987 73-82 Gene_expression denotes expressed
T22969 278-283 Protein denotes NFAT5
T22968 123-128 Protein denotes NFAT5
T22967 31-36 Protein denotes NFAT5
R17006 T22968 T22987 themeOf NFAT5,expressed
R17007 T22968 T22989 themeOf NFAT5,MTb-induced
R17008 T22968 T22988 themeOf NFAT5,suppressed
R17009 T22969 T22991 themeOf NFAT5,expression
R17028 T22987 T22988 themeOf expressed,suppressed
R17029 T22991 T22990 themeOf expression,abrogated

DLUT931

Id Subject Object Predicate Lexical cue
T22929 298-307 Negative_regulation denotes abrogated
T22928 284-294 Gene_expression denotes expression
T22927 153-163 Negative_regulation denotes suppressed
T22926 99-110 Positive_regulation denotes MTb-induced
T22925 73-82 Gene_expression denotes expressed
T22907 278-283 Protein denotes NFAT5
T22906 123-128 Protein denotes NFAT5
T22905 31-36 Protein denotes NFAT5
R16969 T22906 T22925 themeOf NFAT5,expressed
R16970 T22906 T22926 themeOf NFAT5,MTb-induced
R16971 T22907 T22928 themeOf NFAT5,expression
R16982 T22925 T22926 themeOf expressed,MTb-induced
R16983 T22926 T22927 themeOf MTb-induced,suppressed
R16984 T22926 T22927 themeOf MTb-induced,suppressed
R16985 T22928 T22929 themeOf expression,abrogated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23576 278-294 Gene_expression denotes NFAT5 expression
T23567 256-307 Regulation denotes MTb co-infection when NFAT5 expression is abrogated
T23566 273-307 Negative_regulation denotes when NFAT5 expression is abrogated
T23561 99-133 Protein denotes MTb-induced (p = 0.021) NFAT5 mRNA
T23558 99-133 Protein denotes MTb-induced (p = 0.021) NFAT5 mRNA
T23543 5-8 Protein denotes MDM
T23542 256-259 Protein denotes MTb
T23536 278-283 Protein denotes NFAT5
T23526 317-320 Protein denotes MDM
T23521 26-45 Protein denotes with NFAT5-specific
R17514 T23536 T23576 themeOf NFAT5,NFAT5 expression
R17515 T23542 T23567 themeOf MTb,MTb co-infection when NFAT5 expression is abrogated
R17524 T23576 T23566 themeOf NFAT5 expression,when NFAT5 expression is abrogated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23375 320-321 . denotes .
T23374 317-320 NNP denotes MDM
T23373 311-316 JJ denotes human
T23372 308-310 IN denotes in
T23371 298-307 VBN denotes abrogated
T23370 295-297 VBZ denotes is
T23369 284-294 NN denotes expression
T23368 278-283 NNP denotes NFAT5
T23367 273-277 WRB denotes when
T23366 260-272 NN denotes co-infection
T23365 256-259 NNP denotes MTb
T23364 253-255 IN denotes of
T23363 244-252 NN denotes presence
T23362 240-243 DT denotes the
T23361 237-239 IN denotes in
T23360 226-236 VBN denotes suppressed
T23359 212-225 RB denotes significantly
T23358 209-211 VBZ denotes is
T23357 197-208 NN denotes replication
T23356 195-196 NNP denotes B
T23355 187-194 NN denotes subtype
T23354 181-186 JJ denotes HIV-1
T23353 179-180 -RRB- denotes )
T23352 178-179 $ denotes C
T23351 177-178 -LRB- denotes (
T23350 175-176 . denotes .
T23349 174-175 -RRB- denotes )
T23348 170-174 NNS denotes bars
T23347 165-169 NN denotes grey
T23346 164-165 -LRB- denotes (
T23345 153-163 VBN denotes suppressed
T23344 139-152 RB denotes significantly
T23343 134-138 VBD denotes were
T23342 129-133 NNP denotes mRNA
T23341 123-128 CD denotes NFAT5
T23340 121-122 -RRB- denotes )
T23339 116-121 CD denotes 0.021
T23338 114-115 SYM denotes =
T23337 112-113 FW denotes p
T23336 111-112 -LRB- denotes (
T23335 99-110 JJ denotes MTb-induced
T23334 95-98 CC denotes and
T23333 93-94 -RRB- denotes )
T23332 88-93 CD denotes 0.048
T23331 86-87 SYM denotes =
T23330 84-85 FW denotes p
T23329 83-84 -LRB- denotes (
T23328 73-82 VBN denotes expressed
T23327 58-72 RB denotes constitutively
T23326 53-57 DT denotes both
T23325 51-52 , denotes ,
T23324 46-51 NNP denotes siRNA
T23323 31-45 JJ denotes NFAT5-specific
T23322 26-30 IN denotes with
T23321 14-25 VBN denotes transfected
T23320 9-13 VBD denotes were
T23319 5-8 NNP denotes MDM
T23318 0-4 WRB denotes When
R17324 T23318 T23321 advmod When,transfected
R17325 T23319 T23321 nsubjpass MDM,transfected
R17326 T23320 T23321 auxpass were,transfected
R17327 T23321 T23328 advcl transfected,expressed
R17328 T23322 T23321 prep with,transfected
R17329 T23323 T23324 compound NFAT5-specific,siRNA
R17330 T23324 T23322 pobj siRNA,with
R17331 T23325 T23328 punct ",",expressed
R17332 T23326 T23328 nsubj both,expressed
R17333 T23327 T23328 advmod constitutively,expressed
R17334 T23328 T23328 ROOT expressed,expressed
R17335 T23329 T23328 punct (,expressed
R17336 T23330 T23328 dobj p,expressed
R17337 T23331 T23332 punct =,0.048
R17338 T23332 T23330 prep 0.048,p
R17339 T23333 T23330 punct ),p
R17340 T23334 T23330 cc and,p
R17341 T23335 T23330 conj MTb-induced,p
R17342 T23336 T23335 punct (,MTb-induced
R17343 T23337 T23335 appos p,MTb-induced
R17344 T23338 T23339 punct =,0.021
R17345 T23339 T23337 prep 0.021,p
R17346 T23340 T23335 punct ),MTb-induced
R17347 T23341 T23342 nummod NFAT5,mRNA
R17348 T23342 T23345 nsubjpass mRNA,suppressed
R17349 T23343 T23345 auxpass were,suppressed
R17350 T23344 T23345 advmod significantly,suppressed
R17351 T23345 T23345 ROOT suppressed,suppressed
R17352 T23346 T23345 punct (,suppressed
R17353 T23347 T23348 amod grey,bars
R17354 T23348 T23345 npadvmod bars,suppressed
R17355 T23349 T23345 punct ),suppressed
R17356 T23350 T23345 punct .,suppressed
R17357 T23351 T23352 punct (,C
R17358 T23352 T23352 ROOT C,C
R17359 T23353 T23352 punct ),C
R17360 T23354 T23357 amod HIV-1,replication
R17361 T23355 T23356 compound subtype,B
R17362 T23356 T23357 compound B,replication
R17363 T23357 T23360 nsubjpass replication,suppressed
R17364 T23358 T23360 auxpass is,suppressed
R17365 T23359 T23360 advmod significantly,suppressed
R17366 T23360 T23360 ROOT suppressed,suppressed
R17367 T23361 T23360 prep in,suppressed
R17368 T23362 T23363 det the,presence
R17369 T23363 T23361 pobj presence,in
R17370 T23364 T23363 prep of,presence
R17371 T23365 T23366 compound MTb,co-infection
R17372 T23366 T23364 pobj co-infection,of
R17373 T23367 T23371 advmod when,abrogated
R17374 T23368 T23369 compound NFAT5,expression
R17375 T23369 T23371 nsubjpass expression,abrogated
R17376 T23370 T23371 auxpass is,abrogated
R17377 T23371 T23360 advcl abrogated,suppressed
R17378 T23372 T23371 prep in,abrogated
R17379 T23373 T23374 amod human,MDM
R17380 T23374 T23372 pobj MDM,in
R17381 T23375 T23360 punct .,suppressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23025 298-307 Negative_regulation denotes abrogated
T23024 284-294 Gene_expression denotes expression
T23023 311-320 Protein denotes human MDM
T23022 278-283 Protein denotes NFAT5
T23021 153-163 Negative_regulation denotes suppressed
T23020 73-82 Gene_expression denotes expressed
T23019 123-133 Protein denotes NFAT5 mRNA
T23018 31-51 Protein denotes NFAT5-specific siRNA
R17047 T23019 T23020 themeOf NFAT5 mRNA,expressed
R17048 T23020 T23021 themeOf expressed,suppressed
R17049 T23022 T23024 themeOf NFAT5,expression
R17050 T23024 T23025 themeOf expression,abrogated

testone

Id Subject Object Predicate Lexical cue
T22346 278-283 Protein denotes NFAT5
T22345 123-128 Protein denotes NFAT5
T22344 31-36 Protein denotes NFAT5
T22358 153-163 Negative_regulation denotes suppressed
T22357 103-110 Positive_regulation denotes induced
T22356 73-82 Gene_expression denotes expressed

test3

Id Subject Object Predicate Lexical cue
T22393 278-283 Protein denotes NFAT5
T22392 123-128 Protein denotes NFAT5
T22391 31-36 Protein denotes NFAT5
T22372 278-283 Protein denotes NFAT5
T22371 123-128 Protein denotes NFAT5
T22370 31-36 Protein denotes NFAT5