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PMC:3320587 / 20330-20808 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7627 474-477 NN denotes LTR
T7626 468-473 NN denotes HIV-1
T7625 464-467 DT denotes the
T7624 461-463 IN denotes of
T7623 450-460 NN denotes activation
T7622 438-449 JJ denotes MTb-induced
T7621 435-437 IN denotes in
T7620 430-434 NN denotes role
T7619 428-429 DT denotes a
T7618 420-427 VB denotes playing
T7617 416-419 PRP-DOLLAR- denotes its
T7616 411-415 IN denotes with
T7615 400-410 JJ denotes consistent
T7614 398-399 -COMMA- denotes ,
T7613 393-398 NN denotes NFAT5
T7612 390-392 IN denotes of
T7611 383-389 NN denotes levels
T7610 374-382 VB denotes enhanced
T7609 371-373 IN denotes in
T7608 363-370 VB denotes results
T7607 359-362 NN denotes MTb
T7606 356-358 IN denotes by
T7605 345-355 NN denotes engagement
T7604 341-344 NN denotes TLR
T7603 336-340 IN denotes that
T7602 326-335 VB denotes revealing
T7601 324-325 -COMMA- denotes ,
T7600 313-324 NN denotes stimulation
T7599 306-312 NN denotes lysate
T7598 302-305 NN denotes MTb
T7597 299-301 TO denotes to
T7596 290-298 NN denotes response
T7595 287-289 IN denotes in
T7594 277-286 VB denotes increased
T7593 268-276 RB denotes steadily
T7592 261-267 NN denotes levels
T7591 253-260 NN denotes protein
T7590 247-252 NN denotes NFAT5
T7589 242-246 IN denotes that
T7588 236-241 VB denotes found
T7587 233-235 PRP denotes we
T7586 231-232 -COMMA- denotes ,
T7585 229-231 NN denotes 1C
T7584 222-228 NN denotes Figure
T7583 219-221 IN denotes in
T7582 213-218 VB denotes shown
T7581 210-212 IN denotes As
T7580 204-208 NN denotes blot
T7579 196-203 JJ denotes western
T7578 193-195 IN denotes by
T7577 186-192 NN denotes levels
T7576 178-185 NN denotes protein
T7575 172-177 NN denotes NFAT5
T7574 163-171 VB denotes examined
T7573 159-162 CC denotes and
T7572 146-158 JJ denotes unstimulated
T7571 141-145 PRP denotes them
T7570 136-140 VB denotes left
T7569 133-135 CC denotes or
T7568 127-132 NN denotes hours
T7567 124-126 CD denotes 24
T7566 121-123 CC denotes or
T7565 119-120 CD denotes 8
T7564 115-118 IN denotes for
T7563 109-114 NN denotes cells
T7562 98-108 VB denotes stimulated
T7549 13-20 IN denotes whether
T7548 3-12 VB denotes determine
T7547 0-2 TO denotes To
T7561 95-97 PRP denotes we
T7560 93-94 -COMMA- denotes ,
T7559 88-93 NN denotes cells
T7558 82-87 NN denotes THP-1
T7557 79-81 IN denotes in
T7556 68-78 NN denotes expression
T7555 62-67 NN denotes NFAT5
T7554 53-61 VB denotes enhances
T7553 44-52 RB denotes directly
T7552 32-43 NN denotes stimulation
T7551 25-31 NN denotes lysate
T7550 21-24 NN denotes MTb
R6047 T7548 T7547 arg1Of determine,To
R6048 T7552 T7550 arg1Of stimulation,MTb
R6049 T7552 T7551 arg1Of stimulation,lysate
R6050 T7552 T7554 arg1Of stimulation,enhances
R6051 T7554 T7548 arg2Of enhances,determine
R6052 T7554 T7549 arg1Of enhances,whether
R6053 T7554 T7553 arg1Of enhances,directly
R6054 T7556 T7554 arg2Of expression,enhances
R6055 T7556 T7555 arg1Of expression,NFAT5
R6056 T7556 T7557 arg1Of expression,in
R6057 T7559 T7557 arg2Of cells,in
R6058 T7559 T7558 arg1Of cells,THP-1
R6059 T7561 T7548 arg1Of we,determine
R6060 T7561 T7562 arg1Of we,stimulated
R6061 T7561 T7570 arg1Of we,left
R6062 T7562 T7564 arg1Of stimulated,for
R6063 T7562 T7569 arg1Of stimulated,or
R6064 T7563 T7562 arg2Of cells,stimulated
R6065 T7565 T7566 arg1Of 8,or
R6066 T7567 T7566 arg2Of 24,or
R6067 T7568 T7564 arg2Of hours,for
R6068 T7568 T7565 arg1Of hours,8
R6069 T7568 T7567 arg1Of hours,24
R6070 T7569 T7547 modOf or,To
R6071 T7569 T7560 arg1Of or,","
R6072 T7570 T7569 arg2Of left,or
R6073 T7570 T7578 arg1Of left,by
R6074 T7571 T7570 arg2Of them,left
R6075 T7577 T7570 arg3Of levels,left
R6076 T7577 T7572 arg1Of levels,unstimulated
R6077 T7577 T7573 arg1Of levels,and
R6078 T7577 T7574 arg2Of levels,examined
R6079 T7577 T7575 arg1Of levels,NFAT5
R6080 T7577 T7576 arg1Of levels,protein
R6081 T7580 T7578 arg2Of blot,by
R6082 T7580 T7579 arg1Of blot,western
R6083 T7582 T7581 arg2Of shown,As
R6084 T7582 T7583 arg1Of shown,in
R6085 T7585 T7583 arg2Of 1C,in
R6086 T7585 T7584 arg1Of 1C,Figure
R6087 T7587 T7588 arg1Of we,found
R6088 T7588 T7581 arg1Of found,As
R6089 T7588 T7586 arg1Of found,","
R6090 T7592 T7590 arg1Of levels,NFAT5
R6091 T7592 T7591 arg1Of levels,protein
R6092 T7592 T7594 arg1Of levels,increased
R6093 T7594 T7588 arg2Of increased,found
R6094 T7594 T7589 arg1Of increased,that
R6095 T7594 T7593 arg1Of increased,steadily
R6096 T7594 T7595 arg1Of increased,in
R6097 T7594 T7601 arg1Of increased,","
R6098 T7594 T7602 modOf increased,revealing
R6099 T7595 T7597 arg1Of in,to
R6100 T7596 T7595 arg2Of response,in
R6101 T7600 T7595 arg3Of stimulation,in
R6102 T7600 T7598 arg1Of stimulation,MTb
R6103 T7600 T7599 arg1Of stimulation,lysate
R6104 T7605 T7604 arg1Of engagement,TLR
R6105 T7605 T7606 arg1Of engagement,by
R6106 T7605 T7608 arg1Of engagement,results
R6107 T7605 T7615 arg1Of engagement,consistent
R6108 T7607 T7606 arg2Of MTb,by
R6109 T7608 T7602 arg2Of results,revealing
R6110 T7608 T7603 arg1Of results,that
R6111 T7608 T7609 arg1Of results,in
R6112 T7608 T7614 arg1Of results,","
R6113 T7608 T7615 modOf results,consistent
R6114 T7611 T7609 arg2Of levels,in
R6115 T7611 T7610 arg2Of levels,enhanced
R6116 T7611 T7612 arg1Of levels,of
R6117 T7613 T7612 arg2Of NFAT5,of
R6118 T7615 T7616 arg1Of consistent,with
R6119 T7617 T7618 arg1Of its,playing
R6120 T7618 T7616 arg2Of playing,with
R6121 T7618 T7617 arg1Of playing,its
R6122 T7618 T7621 arg1Of playing,in
R6123 T7620 T7618 arg2Of role,playing
R6124 T7620 T7619 arg1Of role,a
R6125 T7623 T7621 arg2Of activation,in
R6126 T7623 T7622 arg1Of activation,MTb-induced
R6127 T7623 T7624 arg1Of activation,of
R6128 T7627 T7624 arg2Of LTR,of
R6129 T7627 T7625 arg1Of LTR,the
R6130 T7627 T7626 arg1Of LTR,HIV-1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7329 62-67 Protein denotes NFAT5
T7332 393-398 Protein denotes NFAT5
T7331 247-252 Protein denotes NFAT5
T7330 172-177 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7638 393-398 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T7637 247-252 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T7636 172-177 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T7635 62-67 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-CC

Id Subject Object Predicate Lexical cue
T7347 109-114 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7346 88-93 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7305 210-478 Sentence denotes As shown in Figure 1C, we found that NFAT5 protein levels steadily increased in response to MTb lysate stimulation, revealing that TLR engagement by MTb results in enhanced levels of NFAT5, consistent with its playing a role in MTb-induced activation of the HIV-1 LTR.
T7304 0-209 Sentence denotes To determine whether MTb lysate stimulation directly enhances NFAT5 expression in THP-1 cells, we stimulated cells for 8 or 24 hours or left them unstimulated and examined NFAT5 protein levels by western blot.
T130 0-209 Sentence denotes To determine whether MTb lysate stimulation directly enhances NFAT5 expression in THP-1 cells, we stimulated cells for 8 or 24 hours or left them unstimulated and examined NFAT5 protein levels by western blot.
T131 210-478 Sentence denotes As shown in Figure 1C, we found that NFAT5 protein levels steadily increased in response to MTb lysate stimulation, revealing that TLR engagement by MTb results in enhanced levels of NFAT5, consistent with its playing a role in MTb-induced activation of the HIV-1 LTR.

simple1

Id Subject Object Predicate Lexical cue
T7364 393-398 Protein denotes NFAT5
T7363 247-252 Protein denotes NFAT5
T7362 172-177 Protein denotes NFAT5
T7361 62-67 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8038 374-382 Positive_regulation denotes enhanced
T8037 277-286 Positive_regulation denotes increased
T8036 68-78 Gene_expression denotes expression
T8035 53-61 Positive_regulation denotes enhances
T8029 393-398 Protein denotes NFAT5
T8028 247-252 Protein denotes NFAT5
T8027 172-177 Protein denotes NFAT5
T8026 62-67 Protein denotes NFAT5
R6461 T8026 T8036 themeOf NFAT5,expression
R6462 T8028 T8037 themeOf NFAT5,increased
R6463 T8029 T8038 themeOf NFAT5,enhanced
R6465 T8036 T8035 themeOf expression,enhances

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7686 277-286 Positive_regulation denotes increased
T7685 374-382 Positive_regulation denotes enhanced
T7684 68-78 Gene_expression denotes expression
T7683 53-61 Positive_regulation denotes enhances
T7676 393-398 Protein denotes NFAT5
T7675 247-252 Protein denotes NFAT5
T7674 172-177 Protein denotes NFAT5
T7673 62-67 Protein denotes NFAT5
R6151 T7673 T7684 themeOf NFAT5,expression
R6152 T7675 T7686 themeOf NFAT5,increased
R6153 T7676 T7685 themeOf NFAT5,enhanced
R6156 T7684 T7683 themeOf expression,enhances

DLUT931

Id Subject Object Predicate Lexical cue
T7657 363-370 Positive_regulation denotes results
T7656 374-382 Positive_regulation denotes enhanced
T7655 277-286 Positive_regulation denotes increased
T7654 53-61 Positive_regulation denotes enhances
T7653 68-78 Gene_expression denotes expression
T7646 393-398 Protein denotes NFAT5
T7645 247-252 Protein denotes NFAT5
T7644 172-177 Protein denotes NFAT5
T7643 62-67 Protein denotes NFAT5
R6135 T7643 T7653 themeOf NFAT5,expression
R6136 T7645 T7655 themeOf NFAT5,increased
R6137 T7646 T7656 themeOf NFAT5,enhanced
R6141 T7653 T7654 themeOf expression,enhances
R6142 T7656 T7657 themeOf enhanced,results

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8081 21-78 Positive_regulation denotes MTb lysate stimulation directly enhances NFAT5 expression
T8079 62-78 Gene_expression denotes NFAT5 expression
T8073 247-267 Protein denotes NFAT5 protein levels
T8071 393-398 Protein denotes NFAT5
T8069 62-67 Protein denotes NFAT5
T8063 172-192 Protein denotes NFAT5 protein levels
T8059 247-252 Protein denotes NFAT5
T8056 21-24 Protein denotes MTb
T8055 438-440 Entity denotes MT
T8053 109-114 Entity denotes cells
T8045 172-177 Protein denotes NFAT5
T8044 359-362 Protein denotes MTb
T8039 302-305 Protein denotes MTb
R6470 T8069 T8079 themeOf NFAT5,NFAT5 expression
R6472 T8079 T8081 themeOf NFAT5 expression,MTb lysate stimulation directly enhances NFAT5 expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8021 477-478 . denotes .
T8020 474-477 NNP denotes LTR
T8019 468-473 NNP denotes HIV-1
T8018 464-467 DT denotes the
T8017 461-463 IN denotes of
T8016 450-460 NN denotes activation
T8015 438-449 JJ denotes MTb-induced
T8014 435-437 IN denotes in
T8013 430-434 NN denotes role
T8012 428-429 DT denotes a
T8011 420-427 VBG denotes playing
T8010 416-419 PRP$ denotes its
T8009 411-415 IN denotes with
T8008 400-410 JJ denotes consistent
T8007 398-399 , denotes ,
T8006 393-398 NNP denotes NFAT5
T8005 390-392 IN denotes of
T8004 383-389 NNS denotes levels
T8003 374-382 JJ denotes enhanced
T8002 371-373 IN denotes in
T8001 363-370 NNS denotes results
T8000 359-362 NNP denotes MTb
T7999 356-358 IN denotes by
T7998 345-355 NN denotes engagement
T7997 341-344 NNP denotes TLR
T7996 336-340 IN denotes that
T7995 326-335 VBG denotes revealing
T7994 324-325 , denotes ,
T7993 313-324 NN denotes stimulation
T7992 306-312 NN denotes lysate
T7991 302-305 NNP denotes MTb
T7990 299-301 TO denotes to
T7989 290-298 NN denotes response
T7988 287-289 IN denotes in
T7987 277-286 VBN denotes increased
T7986 268-276 RB denotes steadily
T7985 261-267 NNS denotes levels
T7984 253-260 NN denotes protein
T7983 247-252 CD denotes NFAT5
T7982 242-246 IN denotes that
T7981 236-241 VBD denotes found
T7980 233-235 PRP denotes we
T7979 231-232 , denotes ,
T7978 229-231 CD denotes 1C
T7977 222-228 NN denotes Figure
T7976 219-221 IN denotes in
T7975 213-218 VBN denotes shown
T7974 210-212 IN denotes As
T7973 208-209 . denotes .
T7972 204-208 NN denotes blot
T7971 196-203 JJ denotes western
T7970 193-195 IN denotes by
T7969 186-192 NNS denotes levels
T7968 178-185 NN denotes protein
T7967 172-177 CD denotes NFAT5
T7966 163-171 VBD denotes examined
T7965 159-162 CC denotes and
T7964 146-158 JJ denotes unstimulated
T7963 141-145 PRP denotes them
T7962 136-140 VBD denotes left
T7961 133-135 CC denotes or
T7960 127-132 NNS denotes hours
T7959 124-126 CD denotes 24
T7958 121-123 CC denotes or
T7957 119-120 CD denotes 8
T7956 115-118 IN denotes for
T7955 109-114 NNS denotes cells
T7954 98-108 VBD denotes stimulated
T7953 95-97 PRP denotes we
T7952 93-94 , denotes ,
T7951 88-93 NNS denotes cells
T7950 82-87 CD denotes THP-1
T7949 79-81 IN denotes in
T7948 68-78 NN denotes expression
T7947 62-67 CD denotes NFAT5
T7946 53-61 VBZ denotes enhances
T7945 44-52 RB denotes directly
T7944 32-43 NN denotes stimulation
T7943 25-31 VBP denotes lysate
T7942 21-24 NNP denotes MTb
T7941 13-20 IN denotes whether
T7940 3-12 VB denotes determine
T7939 0-2 TO denotes To
R6373 T7939 T7940 aux To,determine
R6374 T7940 T7954 advcl determine,stimulated
R6375 T7941 T7946 mark whether,enhances
R6376 T7942 T7944 compound MTb,stimulation
R6377 T7943 T7944 compound lysate,stimulation
R6378 T7944 T7946 nsubj stimulation,enhances
R6379 T7945 T7946 advmod directly,enhances
R6380 T7946 T7940 ccomp enhances,determine
R6381 T7947 T7948 nummod NFAT5,expression
R6382 T7948 T7946 dobj expression,enhances
R6383 T7949 T7948 prep in,expression
R6384 T7950 T7951 nummod THP-1,cells
R6385 T7951 T7949 pobj cells,in
R6386 T7952 T7954 punct ",",stimulated
R6387 T7953 T7954 nsubj we,stimulated
R6388 T7954 T7954 ROOT stimulated,stimulated
R6389 T7955 T7954 dobj cells,stimulated
R6390 T7956 T7954 prep for,stimulated
R6391 T7957 T7956 pobj 8,for
R6394 T7960 T7957 conj hours,8
R6395 T7961 T7954 cc or,stimulated
R6396 T7962 T7954 conj left,stimulated
R6397 T7963 T7962 dobj them,left
R6398 T7964 T7962 oprd unstimulated,left
R6399 T7965 T7962 cc and,left
R6400 T7966 T7962 conj examined,left
R6401 T7967 T7969 nummod NFAT5,levels
R6402 T7968 T7969 compound protein,levels
R6403 T7969 T7966 dobj levels,examined
R6404 T7970 T7966 prep by,examined
R6405 T7971 T7972 amod western,blot
R6406 T7972 T7970 pobj blot,by
R6407 T7973 T7954 punct .,stimulated
R6408 T7974 T7975 mark As,shown
R6409 T7975 T7981 advcl shown,found
R6410 T7976 T7975 prep in,shown
R6411 T7977 T7976 pobj Figure,in
R6412 T7978 T7977 nummod 1C,Figure
R6413 T7979 T7981 punct ",",found
R6414 T7980 T7981 nsubj we,found
R6415 T7981 T7981 ROOT found,found
R6416 T7982 T7987 mark that,increased
R6417 T7983 T7985 nummod NFAT5,levels
R6418 T7984 T7985 compound protein,levels
R6419 T7985 T7987 nsubj levels,increased
R6420 T7986 T7987 advmod steadily,increased
R6421 T7987 T7981 ccomp increased,found
R6422 T7988 T7987 prep in,increased
R6423 T7989 T7988 pobj response,in
R6424 T7990 T7989 prep to,response
R6425 T7991 T7993 compound MTb,stimulation
R6426 T7992 T7993 compound lysate,stimulation
R6427 T7993 T7990 pobj stimulation,to
R6428 T7994 T7987 punct ",",increased
R6429 T7995 T7987 advcl revealing,increased
R6430 T7996 T7998 det that,engagement
R6431 T7997 T7998 compound TLR,engagement
R6432 T7998 T7995 dobj engagement,revealing
R6433 T7999 T7998 prep by,engagement
R6434 T8000 T8001 compound MTb,results
R6435 T8001 T7999 pobj results,by
R6436 T8002 T8001 prep in,results
R6437 T8003 T8004 amod enhanced,levels
R6438 T8004 T8002 pobj levels,in
R6439 T8005 T8004 prep of,levels
R6440 T8006 T8005 pobj NFAT5,of
R6441 T8007 T8006 punct ",",NFAT5
R6442 T8008 T8006 amod consistent,NFAT5
R6443 T8009 T8008 prep with,consistent
R6444 T8010 T8011 nsubj its,playing
R6445 T8011 T8009 pcomp playing,with
R6446 T8012 T8013 det a,role
R6447 T8013 T8011 dobj role,playing
R6448 T8014 T8013 prep in,role
R6449 T8015 T8016 amod MTb-induced,activation
R6450 T8016 T8014 pobj activation,in
R6451 T8017 T8016 prep of,activation
R6452 T8018 T8020 det the,LTR
R6453 T8019 T8020 compound HIV-1,LTR
R6454 T8020 T8017 pobj LTR,of
R6455 T8021 T7981 punct .,found
R6392 T7958 T7957 cc or,8
R6393 T7959 T7960 nummod 24,hours

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7719 450-460 Positive_regulation denotes activation
T7718 374-382 Positive_regulation denotes enhanced
T7717 345-355 Binding denotes engagement
T7716 277-286 Positive_regulation denotes increased
T7715 468-477 Protein denotes HIV-1 LTR
T7714 393-398 Protein denotes NFAT5
T7713 341-344 Protein denotes TLR
T7712 247-260 Protein denotes NFAT5 protein
T7711 53-61 Positive_regulation denotes enhances
T7710 68-78 Gene_expression denotes expression
T7709 172-185 Protein denotes NFAT5 protein
T7708 62-67 Protein denotes NFAT5
R6166 T7708 T7710 themeOf NFAT5,expression
R6167 T7710 T7711 themeOf expression,enhances
R6168 T7712 T7716 themeOf NFAT5 protein,increased
R6169 T7713 T7717 themeOf TLR,engagement
R6170 T7714 T7718 themeOf NFAT5,enhanced
R6171 T7715 T7719 themeOf HIV-1 LTR,activation

testone

Id Subject Object Predicate Lexical cue
T7279 345-355 Binding denotes engagement
T7278 68-78 Gene_expression denotes expression
T7277 53-61 Positive_regulation denotes enhances
T7270 393-398 Protein denotes NFAT5
T7269 247-252 Protein denotes NFAT5
T7268 172-177 Protein denotes NFAT5
T7267 62-67 Protein denotes NFAT5
R5844 T7267 T7278 themeOf NFAT5,expression
R5846 T7278 T7277 themeOf expression,enhances

test3

Id Subject Object Predicate Lexical cue
T7298 393-398 Protein denotes NFAT5
T7297 345-355 Binding denotes engagement
T7296 247-252 Protein denotes NFAT5
T7295 172-177 Protein denotes NFAT5
T7294 68-78 Gene_expression denotes expression
T7293 62-67 Protein denotes NFAT5
T7287 393-398 Protein denotes NFAT5
T7286 247-252 Protein denotes NFAT5
T7285 172-177 Protein denotes NFAT5
T7284 62-67 Protein denotes NFAT5
R5848 T7293 T7294 themeOf NFAT5,expression