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PMC:3320587 / 13612-13829 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6062 210-216 NN denotes buffer
T6061 207-209 IN denotes of
T6060 204-206 NN denotes ml
T6059 201-203 CD denotes 25
T6058 197-200 IN denotes per
T6057 195-196 -RRB- denotes )
T6056 190-195 NNP denotes Roche
T6055 189-190 -LRB- denotes (
T6054 180-188 NNP denotes Cocktail
T6053 170-179 NNP denotes Inhibitor
T6052 161-169 NNP denotes Protease
T6051 151-160 NNP denotes EDTA-free
T6050 142-150 NNP denotes Complete
T6049 139-141 IN denotes of
T6048 132-138 NN denotes tablet
T6047 130-131 CD denotes 1
T6046 126-129 CC denotes and
T6045 124-125 -COMMA- denotes ,
T6044 116-124 NN denotes glycerol
T6043 114-115 NN denotes %
T6042 112-114 CD denotes 10
T6041 110-111 -COMMA- denotes ,
T6040 104-110 NN denotes Triton
T6039 102-103 NN denotes %
T6038 101-102 CD denotes 1
T6037 99-100 -COMMA- denotes ,
T6036 96-99 CD denotes 7.5
T6035 93-95 NN denotes pH
T6034 91-92 -COMMA- denotes ,
T6033 83-91 NN denotes Tris–HCl
T6032 80-82 NN denotes mM
T6031 77-79 CD denotes 50
T6030 75-76 -COMMA- denotes ,
T6029 71-75 NN denotes NaCl
T6028 68-70 NN denotes mM
T6027 64-67 CD denotes 150
T6026 53-63 VB denotes containing
T6025 46-52 NN denotes buffer
T6024 40-45 NN denotes lysis
T6023 35-39 IN denotes with
T6022 25-34 VB denotes collected
T6021 20-24 VB denotes were
T6020 11-19 NN denotes extracts
T6019 6-10 NN denotes cell
T6018 0-5 JJ denotes Whole
R4780 T6025 T6037 arg1Of buffer,","
R4792 T6038 T6039 arg1Of 1,%
R4793 T6040 T6038 arg1Of Triton,1
R4794 T6040 T6041 arg1Of Triton,","
R4795 T6041 T6046 arg1Of ",",and
R4796 T6043 T6042 arg1Of %,10
R4797 T6044 T6041 arg2Of glycerol,","
R4798 T6044 T6043 arg1Of glycerol,%
R4799 T6046 T6037 arg2Of and,","
R4800 T6046 T6045 arg1Of and,","
R4801 T6046 T6049 arg1Of and,of
R4802 T6048 T6046 arg2Of tablet,and
R4803 T6048 T6047 arg1Of tablet,1
R4804 T6054 T6050 arg1Of Cocktail,Complete
R4805 T6054 T6051 arg1Of Cocktail,EDTA-free
R4806 T6054 T6052 arg1Of Cocktail,Protease
R4807 T6054 T6053 arg1Of Cocktail,Inhibitor
R4808 T6054 T6055 arg1Of Cocktail,(
R4809 T6054 T6058 arg1Of Cocktail,per
R4810 T6056 T6055 arg2Of Roche,(
R4811 T6057 T6055 arg3Of ),(
R4812 T6060 T6058 arg2Of ml,per
R4813 T6060 T6059 arg1Of ml,25
R4814 T6062 T6049 arg2Of buffer,of
R4815 T6062 T6054 arg1Of buffer,Cocktail
R4816 T6062 T6061 arg1Of buffer,of
R4772 T6020 T6018 arg1Of extracts,Whole
R4773 T6020 T6019 arg1Of extracts,cell
R4774 T6020 T6021 arg1Of extracts,were
R4775 T6020 T6022 arg2Of extracts,collected
R4776 T6022 T6021 arg2Of collected,were
R4777 T6022 T6023 arg1Of collected,with
R4778 T6025 T6024 arg1Of buffer,lysis
R4779 T6025 T6026 arg1Of buffer,containing
R4781 T6027 T6028 arg1Of 150,mM
R4782 T6029 T6027 arg1Of NaCl,150
R4783 T6029 T6030 arg1Of NaCl,","
R4784 T6030 T6034 arg1Of ",",","
R4785 T6031 T6032 arg1Of 50,mM
R4786 T6033 T6030 arg2Of Tris–HCl,","
R4787 T6033 T6031 arg1Of Tris–HCl,50
R4788 T6034 T6026 arg2Of ",",containing
R4789 T6035 T6034 arg2Of pH,","
R4790 T6035 T6036 arg1Of pH,7.5
R4791 T6037 T6023 arg2Of ",",with

GO-BP

Id Subject Object Predicate Lexical cue
T6005 40-45 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-CC

Id Subject Object Predicate Lexical cue
T6008 6-10 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T5994 0-217 Sentence denotes Whole cell extracts were collected with lysis buffer containing 150 mM NaCl, 50 mM Tris–HCl, pH 7.5, 1% Triton, 10% glycerol, and 1 tablet of Complete EDTA-free Protease Inhibitor Cocktail (Roche) per 25 ml of buffer.
T84 0-217 Sentence denotes Whole cell extracts were collected with lysis buffer containing 150 mM NaCl, 50 mM Tris–HCl, pH 7.5, 1% Triton, 10% glycerol, and 1 tablet of Complete EDTA-free Protease Inhibitor Cocktail (Roche) per 25 ml of buffer.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6513 83-91 Entity denotes Tris–HCl
T6512 64-92 Entity denotes 150 mM NaCl, 50 mM Tris–HCl,
T6509 151-160 Entity denotes EDTA-free
T6506 83-91 Entity denotes Tris–HCl
T6504 101-110 Entity denotes 1% Triton
T6500 142-169 Protein denotes Complete EDTA-free Protease
T6497 88-91 Entity denotes HCl
T6495 112-124 Entity denotes 10% glycerol
T6494 11-19 Entity denotes extracts
T6493 170-179 Entity denotes Inhibitor

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6294 216-217 . denotes .
T6293 210-216 NN denotes buffer
T6292 207-209 IN denotes of
T6291 204-206 NN denotes ml
T6290 201-203 CD denotes 25
T6289 197-200 IN denotes per
T6288 195-196 -RRB- denotes )
T6287 190-195 NNP denotes Roche
T6286 189-190 -LRB- denotes (
T6285 180-188 NNP denotes Cocktail
T6284 170-179 NNP denotes Inhibitor
T6283 161-169 NNP denotes Protease
T6282 151-160 JJ denotes EDTA-free
T6281 142-150 JJ denotes Complete
T6280 139-141 IN denotes of
T6279 132-138 NN denotes tablet
T6278 130-131 CD denotes 1
T6277 126-129 CC denotes and
T6276 124-125 , denotes ,
T6275 116-124 NN denotes glycerol
T6274 114-115 NN denotes %
T6273 112-114 CD denotes 10
T6272 110-111 , denotes ,
T6271 104-110 NNP denotes Triton
T6270 102-103 NN denotes %
T6269 101-102 CD denotes 1
T6268 99-100 , denotes ,
T6267 96-99 CD denotes 7.5
T6266 93-95 NNP denotes pH
T6265 91-92 , denotes ,
T6264 88-91 NNP denotes HCl
T6263 83-87 NNP denotes Tris
T6262 80-82 NNP denotes mM
T6261 77-79 CD denotes 50
T6260 75-76 , denotes ,
T6259 71-75 NNP denotes NaCl
T6258 68-70 NNP denotes mM
T6257 64-67 CD denotes 150
T6256 53-63 VBG denotes containing
T6255 46-52 NN denotes buffer
T6254 40-45 NN denotes lysis
T6253 35-39 IN denotes with
T6252 25-34 VBN denotes collected
T6251 20-24 VBD denotes were
T6250 11-19 NNS denotes extracts
T6249 6-10 NN denotes cell
T6248 0-5 NNP denotes Whole
R4994 T6248 T6250 amod Whole,extracts
R4995 T6249 T6250 compound cell,extracts
R4996 T6250 T6252 nsubjpass extracts,collected
R4997 T6251 T6252 auxpass were,collected
R4998 T6252 T6252 ROOT collected,collected
R4999 T6253 T6252 prep with,collected
R5000 T6254 T6255 compound lysis,buffer
R5001 T6255 T6253 pobj buffer,with
R5002 T6256 T6255 acl containing,buffer
R5003 T6257 T6259 nummod 150,NaCl
R5004 T6258 T6259 compound mM,NaCl
R5005 T6259 T6256 dobj NaCl,containing
R5006 T6260 T6259 punct ",",NaCl
R5007 T6261 T6263 nummod 50,Tris
R5008 T6262 T6263 compound mM,Tris
R5009 T6263 T6264 compound Tris,HCl
R5010 T6264 T6259 appos HCl,NaCl
R5011 T6265 T6264 punct ",",HCl
R5012 T6266 T6264 conj pH,HCl
R5013 T6267 T6266 nummod 7.5,pH
R5014 T6268 T6266 punct ",",pH
R5015 T6269 T6270 nummod 1,%
R5016 T6270 T6271 compound %,Triton
R5017 T6271 T6266 appos Triton,pH
R5018 T6272 T6271 punct ",",Triton
R5019 T6273 T6274 nummod 10,%
R5020 T6274 T6275 compound %,glycerol
R5021 T6275 T6271 conj glycerol,Triton
R5022 T6276 T6275 punct ",",glycerol
R5023 T6277 T6275 cc and,glycerol
R5024 T6278 T6279 nummod 1,tablet
R5025 T6279 T6275 conj tablet,glycerol
R5026 T6280 T6279 prep of,tablet
R5027 T6281 T6282 amod Complete,EDTA-free
R5028 T6282 T6285 amod EDTA-free,Cocktail
R5029 T6283 T6285 compound Protease,Cocktail
R5030 T6284 T6285 compound Inhibitor,Cocktail
R5031 T6285 T6280 pobj Cocktail,of
R5032 T6286 T6287 punct (,Roche
R5033 T6287 T6285 appos Roche,Cocktail
R5034 T6288 T6285 punct ),Cocktail
R5035 T6289 T6279 prep per,tablet
R5036 T6290 T6291 nummod 25,ml
R5037 T6291 T6289 pobj ml,per
R5038 T6292 T6291 prep of,ml
R5039 T6293 T6292 pobj buffer,of
R5040 T6294 T6252 punct .,collected

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6244 161-179 Protein denotes Protease Inhibitor