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PMC:3320587 / 1189-1401 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T393 203-211 NN denotes promoter
T392 197-202 JJ denotes viral
T391 193-196 DT denotes the
T390 188-192 IN denotes with
T389 176-187 NN denotes interaction
T388 169-175 JJ denotes direct
T387 167-168 DT denotes a
T386 163-166 IN denotes via
T385 151-162 NN denotes replication
T384 145-150 NN denotes HIV-1
T383 142-144 IN denotes of
T382 131-141 NN denotes regulation
T381 127-130 NN denotes MTb
T380 124-126 IN denotes in
T379 119-123 NN denotes role
T378 111-118 JJ denotes crucial
T377 109-110 DT denotes a
T376 103-108 VB denotes plays
T375 97-102 NN denotes NFAT5
T374 93-96 CC denotes and
T373 91-92 -COMMA- denotes ,
T372 81-91 NN denotes expression
T371 73-80 NN denotes protein
T370 69-72 CC denotes and
T369 64-68 NN denotes gene
T368 58-63 NN denotes NFAT5
T367 50-57 VB denotes induces
T366 40-49 NN denotes infection
T365 36-39 NN denotes MTb
T364 33-35 TO denotes to
T363 24-32 NN denotes response
T362 17-23 JJ denotes immune
T361 10-16 JJ denotes innate
T360 6-9 DT denotes the
T359 4-5 -COMMA- denotes ,
T358 0-4 RB denotes Thus
R188 T363 T360 arg1Of response,the
R189 T363 T361 arg1Of response,innate
R190 T363 T362 arg1Of response,immune
R191 T363 T364 arg1Of response,to
R192 T363 T367 arg1Of response,induces
R193 T366 T364 arg2Of infection,to
R194 T366 T365 arg1Of infection,MTb
R195 T367 T358 arg1Of induces,Thus
R196 T367 T359 arg1Of induces,","
R197 T367 T374 arg1Of induces,and
R198 T369 T370 arg1Of gene,and
R199 T371 T370 arg2Of protein,and
R200 T372 T367 arg2Of expression,induces
R201 T372 T368 arg1Of expression,NFAT5
R202 T372 T369 arg1Of expression,gene
R203 T372 T371 arg1Of expression,protein
R204 T374 T373 arg1Of and,","
R205 T375 T376 arg1Of NFAT5,plays
R206 T376 T374 arg2Of plays,and
R207 T376 T380 arg1Of plays,in
R208 T376 T386 arg1Of plays,via
R209 T379 T376 arg2Of role,plays
R210 T379 T377 arg1Of role,a
R211 T379 T378 arg1Of role,crucial
R212 T382 T380 arg2Of regulation,in
R213 T382 T381 arg1Of regulation,MTb
R214 T382 T383 arg1Of regulation,of
R215 T385 T383 arg2Of replication,of
R216 T385 T384 arg1Of replication,HIV-1
R217 T389 T386 arg2Of interaction,via
R218 T389 T387 arg1Of interaction,a
R219 T389 T388 arg1Of interaction,direct
R220 T389 T390 arg1Of interaction,with
R221 T393 T390 arg2Of promoter,with
R222 T393 T391 arg1Of promoter,the
R223 T393 T392 arg1Of promoter,viral

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T93 58-63 Protein denotes NFAT5
T94 97-102 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T416 58-63 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T417 97-102 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-BP

Id Subject Object Predicate Lexical cue
T111 10-32 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T110 10-32 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T109 10-32 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T108 10-32 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T97 131-141 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T114 17-32 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T113 10-32 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T112 10-32 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response

sentences

Id Subject Object Predicate Lexical cue
T62 0-212 Sentence denotes Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expression, and NFAT5 plays a crucial role in MTb regulation of HIV-1 replication via a direct interaction with the viral promoter.
T8 0-212 Sentence denotes Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expression, and NFAT5 plays a crucial role in MTb regulation of HIV-1 replication via a direct interaction with the viral promoter.

simple1

Id Subject Object Predicate Lexical cue
T176 58-63 Protein denotes NFAT5
T177 97-102 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T763 97-102 Protein denotes NFAT5
T764 58-63 Protein denotes NFAT5
T775 50-57 Positive_regulation denotes induces
T776 81-91 Gene_expression denotes expression
T777 176-187 Binding denotes interaction
R588 T763 T777 themeOf NFAT5,interaction
R589 T764 T775 themeOf NFAT5,induces
R590 T764 T776 themeOf NFAT5,expression
R595 T776 T775 themeOf expression,induces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T449 97-102 Protein denotes NFAT5
T450 58-63 Protein denotes NFAT5
T461 81-91 Gene_expression denotes expression
T462 176-187 Binding denotes interaction
T463 50-57 Positive_regulation denotes induces
R513 T449 T462 themeOf NFAT5,interaction
R514 T450 T463 themeOf NFAT5,induces
R515 T450 T461 themeOf NFAT5,expression
R516 T450 T462 themeOf NFAT5,interaction
R522 T461 T463 themeOf expression,induces

DLUT931

Id Subject Object Predicate Lexical cue
T440 50-57 Positive_regulation denotes induces
T439 176-187 Binding denotes interaction
T438 81-91 Gene_expression denotes expression
T429 97-102 Protein denotes NFAT5
T430 58-63 Protein denotes NFAT5
R243 T438 T440 themeOf expression,induces
R505 T429 T439 themeOf NFAT5,interaction
R506 T430 T438 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T822 36-49 Regulation denotes MTb infection
T818 73-91 Gene_expression denotes protein expression
T815 176-211 Binding denotes interaction with the viral promoter
T814 124-211 Regulation denotes in MTb regulation of HIV-1 replication via a direct interaction with the viral promoter
T778 58-63 Protein denotes NFAT5
T779 36-39 Protein denotes MTb
T783 127-130 Protein denotes MTb
T784 58-68 Protein denotes NFAT5 gene
T785 188-211 Entity denotes with the viral promoter
T793 73-80 Protein denotes protein
T799 97-102 Protein denotes NFAT5
R456 T815 T814 themeOf interaction with the viral promoter,in MTb regulation of HIV-1 replication via a direct interaction with the viral promoter
R596 T779 T822 themeOf MTb,MTb infection
R598 T785 T815 themeOf with the viral promoter,interaction with the viral promoter
R601 T793 T818 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T735 211-212 . denotes .
T734 203-211 NN denotes promoter
T733 197-202 JJ denotes viral
T732 193-196 DT denotes the
T731 188-192 IN denotes with
T730 176-187 NN denotes interaction
T729 169-175 JJ denotes direct
T728 167-168 DT denotes a
T727 163-166 IN denotes via
T726 151-162 NN denotes replication
T725 145-150 JJ denotes HIV-1
T724 142-144 IN denotes of
T723 131-141 NN denotes regulation
T722 127-130 NNP denotes MTb
T721 124-126 IN denotes in
T720 119-123 NN denotes role
T719 111-118 JJ denotes crucial
T718 109-110 DT denotes a
T717 103-108 VBZ denotes plays
T716 97-102 NNP denotes NFAT5
T715 93-96 CC denotes and
T714 91-92 , denotes ,
T713 81-91 NN denotes expression
T712 73-80 NN denotes protein
T711 69-72 CC denotes and
T710 64-68 NN denotes gene
T709 58-63 NNP denotes NFAT5
T708 50-57 VBZ denotes induces
T707 40-49 NN denotes infection
T706 36-39 NNP denotes MTb
T705 33-35 TO denotes to
T704 24-32 NN denotes response
T703 17-23 JJ denotes immune
T702 10-16 NN denotes innate
T701 6-9 DT denotes the
T700 4-5 , denotes ,
T699 0-4 RB denotes Thus
R398 T699 T708 advmod Thus,induces
R399 T700 T708 punct ",",induces
R400 T701 T704 det the,response
R401 T702 T704 amod innate,response
R402 T703 T704 amod immune,response
R403 T704 T708 nsubj response,induces
R404 T705 T704 prep to,response
R405 T706 T707 compound MTb,infection
R406 T707 T705 pobj infection,to
R407 T708 T708 ROOT induces,induces
R408 T709 T710 compound NFAT5,gene
R409 T710 T708 dobj gene,induces
R410 T711 T710 cc and,gene
R411 T712 T713 compound protein,expression
R412 T713 T710 conj expression,gene
R413 T714 T708 punct ",",induces
R414 T715 T708 cc and,induces
R415 T716 T717 nsubj NFAT5,plays
R416 T717 T708 conj plays,induces
R417 T718 T720 det a,role
R418 T719 T720 amod crucial,role
R419 T720 T717 dobj role,plays
R420 T721 T720 prep in,role
R421 T722 T723 compound MTb,regulation
R422 T723 T721 pobj regulation,in
R423 T724 T723 prep of,regulation
R424 T725 T726 compound HIV-1,replication
R425 T726 T724 pobj replication,of
R426 T727 T717 prep via,plays
R427 T728 T730 det a,interaction
R428 T729 T730 amod direct,interaction
R429 T730 T727 pobj interaction,via
R430 T731 T730 prep with,interaction
R431 T732 T734 det the,promoter
R432 T733 T734 amod viral,promoter
R433 T734 T731 pobj promoter,with
R434 T735 T717 punct .,plays

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T154 50-57 Positive_regulation denotes induces
T153 176-187 Binding denotes interaction
T152 81-91 Gene_expression denotes expression
T151 127-130 Protein denotes MTb
T150 97-102 Protein denotes NFAT5
T149 58-68 Protein denotes NFAT5 gene
R34 T149 T152 themeOf NFAT5 gene,expression
R35 T150 T153 themeOf NFAT5,interaction
R36 T151 T153 themeOf MTb,interaction
R37 T152 T154 themeOf expression,induces

testone

Id Subject Object Predicate Lexical cue
T31 176-187 Binding denotes interaction
T30 81-91 Gene_expression denotes expression
T29 50-57 Positive_regulation denotes induces
T21 97-102 Protein denotes NFAT5
T20 58-63 Protein denotes NFAT5
R5 T20 T30 themeOf NFAT5,expression
R6 T21 T31 themeOf NFAT5,interaction
R7 T21 T29 themeOf NFAT5,induces
R10 T30 T29 themeOf expression,induces

test3

Id Subject Object Predicate Lexical cue
T41 97-102 Protein denotes NFAT5
T40 58-63 Protein denotes NFAT5
T55 176-187 Binding denotes interaction
T54 97-102 Protein denotes NFAT5
T53 81-91 Gene_expression denotes expression
T52 58-63 Protein denotes NFAT5
R13 T52 T55 themeOf NFAT5,interaction
R14 T52 T53 themeOf NFAT5,expression
R15 T54 T55 themeOf NFAT5,interaction