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PMC:3320587 / 10686-10964 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4777 272-277 NN denotes serum
T4776 269-271 NN denotes AB
T4775 263-268 JJ denotes human
T4774 246-262 JJ denotes heat-inactivated
T4773 244-245 NN denotes %
T4772 243-244 CD denotes 5
T4771 238-242 CC denotes plus
T4770 231-237 NN denotes medium
T4769 216-230 JJ denotes Macrophage-SFM
T4768 213-215 IN denotes in
T4767 210-212 NN denotes µl
T4766 206-209 CD denotes 750
T4765 203-205 IN denotes of
T4764 196-202 NN denotes volume
T4763 190-195 JJ denotes final
T4762 188-189 DT denotes a
T4761 185-187 IN denotes in
T4760 183-184 -COMMA- denotes ,
T4759 171-183 NN denotes manufacturer
T4758 167-170 DT denotes the
T4757 164-166 IN denotes by
T4756 152-163 VB denotes recommended
T4755 149-151 IN denotes as
T4754 140-148 VB denotes prepared
T4753 138-139 -COMMA- denotes ,
T4752 137-138 -RRB- denotes )
T4751 123-137 NN denotes www.ambion.com
T4750 121-122 -COMMA- denotes ,
T4749 117-121 NNP denotes Inc.
T4748 110-116 NNP denotes Ambion
T4747 109-110 -LRB- denotes (
T4746 101-108 NN denotes reagent
T4745 88-100 NN denotes transfection
T4744 82-87 NN denotes NeoFX
T4743 75-81 NN denotes siPORT
T4742 72-74 IN denotes in
T4741 66-71 NN denotes siRNA
T4740 56-65 VB denotes indicated
T4739 52-55 DT denotes the
T4738 49-51 IN denotes of
T4737 46-48 NN denotes µM
T4736 44-45 CD denotes 1
T4735 38-43 VB denotes using
T4734 31-37 NN denotes plates
T4733 24-30 JJ denotes 6-well
T4732 21-23 IN denotes in
T4731 9-20 VB denotes transfected
T4730 4-8 VB denotes were
T4729 0-3 NN denotes MDM
R3701 T4729 T4730 arg1Of MDM,were
R3702 T4729 T4731 arg2Of MDM,transfected
R3703 T4731 T4730 arg2Of transfected,were
R3704 T4731 T4732 arg1Of transfected,in
R3705 T4731 T4760 arg1Of transfected,","
R3706 T4731 T4761 arg1Of transfected,in
R3707 T4734 T4732 arg2Of plates,in
R3708 T4734 T4733 arg1Of plates,6-well
R3709 T4734 T4735 arg1Of plates,using
R3710 T4734 T4753 arg1Of plates,","
R3711 T4734 T4754 arg2Of plates,prepared
R3712 T4737 T4735 arg2Of µM,using
R3713 T4737 T4736 arg1Of µM,1
R3714 T4737 T4738 arg1Of µM,of
R3715 T4737 T4742 arg1Of µM,in
R3716 T4741 T4738 arg2Of siRNA,of
R3717 T4741 T4739 arg1Of siRNA,the
R3718 T4741 T4740 arg2Of siRNA,indicated
R3719 T4746 T4742 arg2Of reagent,in
R3720 T4746 T4743 arg1Of reagent,siPORT
R3721 T4746 T4744 arg1Of reagent,NeoFX
R3722 T4746 T4745 arg1Of reagent,transfection
R3723 T4746 T4747 arg1Of reagent,(
R3724 T4749 T4747 arg2Of Inc.,(
R3725 T4749 T4748 arg1Of Inc.,Ambion
R3726 T4749 T4750 arg1Of Inc.,","
R3727 T4751 T4750 arg2Of www.ambion.com,","
R3728 T4752 T4747 arg3Of ),(
R3729 T4754 T4755 arg1Of prepared,as
R3730 T4756 T4755 arg2Of recommended,as
R3731 T4759 T4756 arg1Of manufacturer,recommended
R3732 T4759 T4757 arg2Of manufacturer,by
R3733 T4759 T4758 arg1Of manufacturer,the
R3734 T4764 T4761 arg2Of volume,in
R3735 T4764 T4762 arg1Of volume,a
R3736 T4764 T4763 arg1Of volume,final
R3737 T4764 T4765 arg1Of volume,of
R3738 T4764 T4768 arg1Of volume,in
R3739 T4767 T4765 arg2Of µl,of
R3740 T4767 T4766 arg1Of µl,750
R3741 T4770 T4769 arg1Of medium,Macrophage-SFM
R3742 T4770 T4771 arg1Of medium,plus
R3743 T4771 T4768 arg2Of plus,in
R3744 T4772 T4773 arg1Of 5,%
R3745 T4777 T4771 arg2Of serum,plus
R3746 T4777 T4772 arg1Of serum,5
R3747 T4777 T4774 arg1Of serum,heat-inactivated
R3748 T4777 T4775 arg1Of serum,human
R3749 T4777 T4776 arg1Of serum,AB

UBERON-AE

Id Subject Object Predicate Lexical cue
T4645 272-277 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

sentences

Id Subject Object Predicate Lexical cue
T4650 0-278 Sentence denotes MDM were transfected in 6-well plates using 1 µM of the indicated siRNA in siPORT NeoFX transfection reagent (Ambion Inc., www.ambion.com), prepared as recommended by the manufacturer, in a final volume of 750 µl in Macrophage-SFM medium plus 5% heat-inactivated human AB serum.
T68 0-278 Sentence denotes MDM were transfected in 6-well plates using 1 µM of the indicated siRNA in siPORT NeoFX transfection reagent (Ambion Inc., www.ambion.com), prepared as recommended by the manufacturer, in a final volume of 750 µl in Macrophage-SFM medium plus 5% heat-inactivated human AB serum.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5031 75-108 Entity denotes siPORT NeoFX transfection reagent
T5026 0-3 Protein denotes MDM

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4974 277-278 . denotes .
T4973 272-277 NN denotes serum
T4972 269-271 NNP denotes AB
T4971 263-268 JJ denotes human
T4970 246-262 JJ denotes heat-inactivated
T4969 244-245 NN denotes %
T4968 243-244 CD denotes 5
T4967 238-242 CC denotes plus
T4966 231-237 NN denotes medium
T4965 216-230 NNP denotes Macrophage-SFM
T4964 213-215 IN denotes in
T4963 210-212 NN denotes µl
T4962 206-209 CD denotes 750
T4961 203-205 IN denotes of
T4960 196-202 NN denotes volume
T4959 190-195 JJ denotes final
T4958 188-189 DT denotes a
T4957 185-187 IN denotes in
T4956 183-184 , denotes ,
T4955 171-183 NN denotes manufacturer
T4954 167-170 DT denotes the
T4953 164-166 IN denotes by
T4952 152-163 VBN denotes recommended
T4951 149-151 IN denotes as
T4950 140-148 VBN denotes prepared
T4949 138-139 , denotes ,
T4948 137-138 -RRB- denotes )
T4947 123-137 NN denotes www.ambion.com
T4946 121-122 , denotes ,
T4945 117-121 NNP denotes Inc.
T4944 110-116 NNP denotes Ambion
T4943 109-110 -LRB- denotes (
T4942 101-108 NN denotes reagent
T4941 88-100 NN denotes transfection
T4940 82-87 NNP denotes NeoFX
T4939 75-81 NNP denotes siPORT
T4938 72-74 IN denotes in
T4937 66-71 NN denotes siRNA
T4936 56-65 VBN denotes indicated
T4935 52-55 DT denotes the
T4934 49-51 IN denotes of
T4933 46-48 NN denotes µM
T4932 44-45 CD denotes 1
T4931 38-43 VBG denotes using
T4930 31-37 NNS denotes plates
T4929 24-30 JJ denotes 6-well
T4928 21-23 IN denotes in
T4927 9-20 VBN denotes transfected
T4926 4-8 VBD denotes were
T4925 0-3 NNP denotes MDM
R3877 T4925 T4927 nsubjpass MDM,transfected
R3878 T4926 T4927 auxpass were,transfected
R3879 T4927 T4927 ROOT transfected,transfected
R3880 T4928 T4927 prep in,transfected
R3881 T4929 T4930 amod 6-well,plates
R3882 T4930 T4928 pobj plates,in
R3883 T4931 T4927 advcl using,transfected
R3884 T4932 T4933 nummod 1,µM
R3885 T4933 T4931 dobj µM,using
R3886 T4934 T4933 prep of,µM
R3887 T4935 T4937 det the,siRNA
R3888 T4936 T4937 amod indicated,siRNA
R3889 T4937 T4934 pobj siRNA,of
R3890 T4938 T4937 prep in,siRNA
R3891 T4939 T4942 nmod siPORT,reagent
R3892 T4940 T4942 nmod NeoFX,reagent
R3893 T4941 T4942 compound transfection,reagent
R3894 T4942 T4945 nmod reagent,Inc.
R3895 T4943 T4945 punct (,Inc.
R3896 T4944 T4945 compound Ambion,Inc.
R3897 T4945 T4938 pobj Inc.,in
R3898 T4946 T4945 punct ",",Inc.
R3899 T4947 T4945 appos www.ambion.com,Inc.
R3900 T4948 T4945 punct ),Inc.
R3901 T4949 T4933 punct ",",µM
R3902 T4950 T4927 conj prepared,transfected
R3903 T4951 T4952 mark as,recommended
R3904 T4952 T4950 advcl recommended,prepared
R3905 T4953 T4952 agent by,recommended
R3906 T4954 T4955 det the,manufacturer
R3907 T4955 T4953 pobj manufacturer,by
R3908 T4956 T4950 punct ",",prepared
R3909 T4957 T4950 prep in,prepared
R3910 T4958 T4960 det a,volume
R3911 T4959 T4960 amod final,volume
R3912 T4960 T4957 pobj volume,in
R3913 T4961 T4960 prep of,volume
R3914 T4962 T4963 nummod 750,µl
R3915 T4963 T4961 pobj µl,of
R3916 T4964 T4963 prep in,µl
R3917 T4965 T4966 compound Macrophage-SFM,medium
R3918 T4966 T4964 pobj medium,in
R3919 T4967 T4927 cc plus,transfected
R3920 T4968 T4969 nummod 5,%
R3921 T4969 T4973 nmod %,serum
R3922 T4970 T4973 amod heat-inactivated,serum
R3923 T4971 T4972 compound human,AB
R3924 T4972 T4973 compound AB,serum
R3925 T4973 T4927 conj serum,transfected
R3926 T4974 T4927 punct .,transfected

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4846 75-87 Protein denotes siPORT NeoFX