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PMC:3320587 / 1031-1274 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T371 231-238 NN denotes protein
T370 227-230 CC denotes and
T369 222-226 NN denotes gene
T368 216-221 NN denotes NFAT5
T367 208-215 VB denotes induces
T366 198-207 NN denotes infection
T365 194-197 NN denotes MTb
T364 191-193 TO denotes to
T363 182-190 NN denotes response
T362 175-181 JJ denotes immune
T361 168-174 JJ denotes innate
T360 164-167 DT denotes the
T359 162-163 -COMMA- denotes ,
T358 158-162 RB denotes Thus
T357 146-156 NN denotes expression
T356 141-145 NN denotes gene
T355 135-140 NN denotes NFAT5
T354 123-134 JJ denotes MTb-induced
T353 114-122 VB denotes inhibits
T352 100-113 RB denotes significantly
T351 98-99 -COMMA- denotes ,
T350 93-98 NN denotes TRAF6
T349 89-92 CC denotes and
T348 87-88 -COMMA- denotes ,
T347 82-87 NN denotes IRAK1
T346 80-81 -COMMA- denotes ,
T345 75-80 NN denotes MyD88
T344 65-74 NN denotes molecules
T343 55-64 VB denotes signaling
T342 44-54 JJ denotes downstream
T341 40-43 DT denotes the
T340 30-39 VB denotes including
T339 28-29 -COMMA- denotes ,
T338 19-28 NN denotes monocytes
T337 13-18 JJ denotes human
T336 10-12 IN denotes in
T335 2-9 NN denotes pathway
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene
R188 T363 T360 arg1Of response,the
R189 T363 T361 arg1Of response,innate
R190 T363 T362 arg1Of response,immune
R191 T363 T364 arg1Of response,to
R192 T363 T367 arg1Of response,induces
R193 T366 T364 arg2Of infection,to
R194 T366 T365 arg1Of infection,MTb
R195 T367 T358 arg1Of induces,Thus
R196 T367 T359 arg1Of induces,","
R198 T369 T370 arg1Of gene,and
R199 T371 T370 arg2Of protein,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 75-80 Protein denotes MyD88
T90 82-87 Protein denotes IRAK1
T91 93-98 Protein denotes TRAF6
T92 135-140 Protein denotes NFAT5
T93 216-221 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 135-140 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T416 216-221 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 75-80 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 93-98 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T111 168-190 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T110 168-190 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T109 168-190 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T108 168-190 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T106 141-156 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 55-64 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T114 175-190 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T113 168-190 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T112 168-190 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response

simple1

Id Subject Object Predicate Lexical cue
T172 75-80 Protein denotes MyD88
T173 82-87 Protein denotes IRAK1
T174 93-98 Protein denotes TRAF6
T175 135-140 Protein denotes NFAT5
T176 216-221 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 75-80 Protein denotes MyD88
T760 82-87 Protein denotes IRAK1
T761 93-98 Protein denotes TRAF6
T762 135-140 Protein denotes NFAT5
T764 216-221 Protein denotes NFAT5
T772 123-134 Positive_regulation denotes MTb-induced
T773 114-122 Negative_regulation denotes inhibits
T774 146-156 Gene_expression denotes expression
T775 208-215 Positive_regulation denotes induces
R587 T762 T774 themeOf NFAT5,expression
R589 T764 T775 themeOf NFAT5,induces
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 75-80 Protein denotes MyD88
T446 82-87 Protein denotes IRAK1
T447 93-98 Protein denotes TRAF6
T448 135-140 Protein denotes NFAT5
T450 216-221 Protein denotes NFAT5
T458 146-156 Gene_expression denotes expression
T459 114-122 Negative_regulation denotes inhibits
T460 123-134 Positive_regulation denotes MTb-induced
T463 208-215 Positive_regulation denotes induces
R512 T448 T458 themeOf NFAT5,expression
R514 T450 T463 themeOf NFAT5,induces
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T440 208-215 Positive_regulation denotes induces
T437 114-122 Negative_regulation denotes inhibits
T436 123-134 Positive_regulation denotes MTb-induced
T435 146-156 Gene_expression denotes expression
T425 75-80 Protein denotes MyD88
T426 82-87 Protein denotes IRAK1
T427 93-98 Protein denotes TRAF6
T428 135-140 Protein denotes NFAT5
T430 216-221 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T822 194-207 Regulation denotes MTb infection
T820 75-156 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 123-156 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 65-74 Entity denotes molecules
T778 216-221 Protein denotes NFAT5
T779 194-197 Protein denotes MTb
T781 75-99 Protein denotes MyD88, IRAK1, and TRAF6,
T784 216-226 Protein denotes NFAT5 gene
T791 13-29 Entity denotes human monocytes,
T792 82-88 Protein denotes IRAK1,
T793 231-238 Protein denotes protein
T794 135-140 Protein denotes NFAT5
T801 123-134 Protein denotes MTb-induced
T802 93-98 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R596 T779 T822 themeOf MTb,MTb infection
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T712 231-238 NN denotes protein
T711 227-230 CC denotes and
T710 222-226 NN denotes gene
T709 216-221 NNP denotes NFAT5
T708 208-215 VBZ denotes induces
T707 198-207 NN denotes infection
T706 194-197 NNP denotes MTb
T705 191-193 TO denotes to
T704 182-190 NN denotes response
T703 175-181 JJ denotes immune
T702 168-174 NN denotes innate
T701 164-167 DT denotes the
T700 162-163 , denotes ,
T699 158-162 RB denotes Thus
T698 156-157 . denotes .
T697 146-156 NN denotes expression
T696 141-145 NN denotes gene
T695 135-140 CD denotes NFAT5
T694 123-134 JJ denotes MTb-induced
T693 114-122 VBZ denotes inhibits
T692 100-113 RB denotes significantly
T691 98-99 , denotes ,
T690 93-98 NNP denotes TRAF6
T689 89-92 CC denotes and
T688 87-88 , denotes ,
T687 82-87 NNP denotes IRAK1
T686 80-81 , denotes ,
T685 75-80 NNP denotes MyD88
T684 65-74 NNS denotes molecules
T683 55-64 VBG denotes signaling
T675 2-9 NN denotes pathway
T676 10-12 IN denotes in
T677 13-18 JJ denotes human
T678 19-28 NNS denotes monocytes
T679 28-29 , denotes ,
T680 30-39 VBG denotes including
T681 40-43 DT denotes the
T682 44-54 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R398 T699 T708 advmod Thus,induces
R399 T700 T708 punct ",",induces
R400 T701 T704 det the,response
R401 T702 T704 amod innate,response
R402 T703 T704 amod immune,response
R403 T704 T708 nsubj response,induces
R404 T705 T704 prep to,response
R405 T706 T707 compound MTb,infection
R406 T707 T705 pobj infection,to
R407 T708 T708 ROOT induces,induces
R408 T709 T710 compound NFAT5,gene
R409 T710 T708 dobj gene,induces
R410 T711 T710 cc and,gene
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T154 208-215 Positive_regulation denotes induces
T149 216-226 Protein denotes NFAT5 gene
T148 114-122 Negative_regulation denotes inhibits
T147 114-122 Negative_regulation denotes inhibits
T146 114-122 Negative_regulation denotes inhibits
T145 123-134 Positive_regulation denotes MTb-induced
T144 146-156 Gene_expression denotes expression
T140 135-145 Protein denotes NFAT5 gene
T139 93-98 Protein denotes TRAF6
T138 82-87 Protein denotes IRAK1
T137 75-80 Protein denotes MyD88
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T29 208-215 Positive_regulation denotes induces
T28 146-156 Gene_expression denotes expression
T27 127-134 Positive_regulation denotes induced
T26 114-122 Negative_regulation denotes inhibits
T20 216-221 Protein denotes NFAT5
T19 135-140 Protein denotes NFAT5
T18 93-98 Protein denotes TRAF6
T17 82-87 Protein denotes IRAK1
T16 75-80 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T40 216-221 Protein denotes NFAT5
T39 135-140 Protein denotes NFAT5
T38 93-98 Protein denotes TRAF6
T37 82-87 Protein denotes IRAK1
T36 75-80 Protein denotes MyD88
T52 216-221 Protein denotes NFAT5
T51 135-140 Protein denotes NFAT5
T50 93-98 Protein denotes TRAF6
T49 82-87 Protein denotes IRAK1
T48 75-80 Protein denotes MyD88