> top > docs > PMC:3320587 > spans > 1013-1244 > annotations

PMC:3320587 / 1013-1244 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T366 216-225 NN denotes infection
T365 212-215 NN denotes MTb
T364 209-211 TO denotes to
T363 200-208 NN denotes response
T362 193-199 JJ denotes immune
T361 186-192 JJ denotes innate
T360 182-185 DT denotes the
T359 180-181 -COMMA- denotes ,
T358 176-180 RB denotes Thus
T357 164-174 NN denotes expression
T356 159-163 NN denotes gene
T355 153-158 NN denotes NFAT5
T354 141-152 JJ denotes MTb-induced
T353 132-140 VB denotes inhibits
T352 118-131 RB denotes significantly
T351 116-117 -COMMA- denotes ,
T350 111-116 NN denotes TRAF6
T349 107-110 CC denotes and
T348 105-106 -COMMA- denotes ,
T347 100-105 NN denotes IRAK1
T346 98-99 -COMMA- denotes ,
T345 93-98 NN denotes MyD88
T344 83-92 NN denotes molecules
T343 73-82 VB denotes signaling
T342 62-72 JJ denotes downstream
T341 58-61 DT denotes the
T340 48-57 VB denotes including
T339 46-47 -COMMA- denotes ,
T338 37-46 NN denotes monocytes
T337 31-36 JJ denotes human
T336 28-30 IN denotes in
T335 20-27 NN denotes pathway
T334 16-19 NN denotes TLR
T333 12-15 DT denotes the
T332 9-11 IN denotes of
R162 T335 T332 arg2Of pathway,of
R163 T335 T333 arg1Of pathway,the
R164 T335 T334 arg1Of pathway,TLR
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene
R188 T363 T360 arg1Of response,the
R189 T363 T361 arg1Of response,innate
R190 T363 T362 arg1Of response,immune
R191 T363 T364 arg1Of response,to
R193 T366 T364 arg2Of infection,to
R194 T366 T365 arg1Of infection,MTb

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 93-98 Protein denotes MyD88
T90 100-105 Protein denotes IRAK1
T91 111-116 Protein denotes TRAF6
T92 153-158 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 153-158 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 93-98 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 111-116 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T111 186-208 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T110 186-208 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T109 186-208 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T108 186-208 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T106 159-174 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 73-82 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T114 193-208 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T113 186-208 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T112 186-208 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response

simple1

Id Subject Object Predicate Lexical cue
T172 93-98 Protein denotes MyD88
T173 100-105 Protein denotes IRAK1
T174 111-116 Protein denotes TRAF6
T175 153-158 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 93-98 Protein denotes MyD88
T760 100-105 Protein denotes IRAK1
T761 111-116 Protein denotes TRAF6
T762 153-158 Protein denotes NFAT5
T772 141-152 Positive_regulation denotes MTb-induced
T773 132-140 Negative_regulation denotes inhibits
T774 164-174 Gene_expression denotes expression
R587 T762 T774 themeOf NFAT5,expression
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 93-98 Protein denotes MyD88
T446 100-105 Protein denotes IRAK1
T447 111-116 Protein denotes TRAF6
T448 153-158 Protein denotes NFAT5
T458 164-174 Gene_expression denotes expression
T459 132-140 Negative_regulation denotes inhibits
T460 141-152 Positive_regulation denotes MTb-induced
R512 T448 T458 themeOf NFAT5,expression
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T437 132-140 Negative_regulation denotes inhibits
T436 141-152 Positive_regulation denotes MTb-induced
T435 164-174 Gene_expression denotes expression
T425 93-98 Protein denotes MyD88
T426 100-105 Protein denotes IRAK1
T427 111-116 Protein denotes TRAF6
T428 153-158 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T822 212-225 Regulation denotes MTb infection
T820 93-174 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 141-174 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 83-92 Entity denotes molecules
T779 212-215 Protein denotes MTb
T781 93-117 Protein denotes MyD88, IRAK1, and TRAF6,
T791 31-47 Entity denotes human monocytes,
T792 100-106 Protein denotes IRAK1,
T794 153-158 Protein denotes NFAT5
T801 141-152 Protein denotes MTb-induced
T802 111-116 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R596 T779 T822 themeOf MTb,MTb infection
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T707 216-225 NN denotes infection
T706 212-215 NNP denotes MTb
T705 209-211 TO denotes to
T704 200-208 NN denotes response
T703 193-199 JJ denotes immune
T702 186-192 NN denotes innate
T701 182-185 DT denotes the
T700 180-181 , denotes ,
T699 176-180 RB denotes Thus
T698 174-175 . denotes .
T697 164-174 NN denotes expression
T696 159-163 NN denotes gene
T695 153-158 CD denotes NFAT5
T694 141-152 JJ denotes MTb-induced
T693 132-140 VBZ denotes inhibits
T692 118-131 RB denotes significantly
T691 116-117 , denotes ,
T690 111-116 NNP denotes TRAF6
T689 107-110 CC denotes and
T688 105-106 , denotes ,
T687 100-105 NNP denotes IRAK1
T686 98-99 , denotes ,
T685 93-98 NNP denotes MyD88
T684 83-92 NNS denotes molecules
T683 73-82 VBG denotes signaling
T672 9-11 IN denotes of
T673 12-15 DT denotes the
T674 16-19 NNP denotes TLR
T675 20-27 NN denotes pathway
T676 28-30 IN denotes in
T677 31-36 JJ denotes human
T678 37-46 NNS denotes monocytes
T679 46-47 , denotes ,
T680 48-57 VBG denotes including
T681 58-61 DT denotes the
T682 62-72 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R400 T701 T704 det the,response
R401 T702 T704 amod innate,response
R402 T703 T704 amod immune,response
R404 T705 T704 prep to,response
R405 T706 T707 compound MTb,infection
R406 T707 T705 pobj infection,to
R571 T673 T675 det the,pathway
R572 T674 T675 compound TLR,pathway
R573 T675 T672 pobj pathway,of
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T148 132-140 Negative_regulation denotes inhibits
T147 132-140 Negative_regulation denotes inhibits
T146 132-140 Negative_regulation denotes inhibits
T145 141-152 Positive_regulation denotes MTb-induced
T144 164-174 Gene_expression denotes expression
T140 153-163 Protein denotes NFAT5 gene
T139 111-116 Protein denotes TRAF6
T138 100-105 Protein denotes IRAK1
T137 93-98 Protein denotes MyD88
T136 16-19 Protein denotes TLR
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T28 164-174 Gene_expression denotes expression
T27 145-152 Positive_regulation denotes induced
T26 132-140 Negative_regulation denotes inhibits
T19 153-158 Protein denotes NFAT5
T18 111-116 Protein denotes TRAF6
T17 100-105 Protein denotes IRAK1
T16 93-98 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T39 153-158 Protein denotes NFAT5
T38 111-116 Protein denotes TRAF6
T37 100-105 Protein denotes IRAK1
T36 93-98 Protein denotes MyD88
T51 153-158 Protein denotes NFAT5
T50 111-116 Protein denotes TRAF6
T49 100-105 Protein denotes IRAK1
T48 93-98 Protein denotes MyD88