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PMC:3320587 / 1008-1356 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T386 344-347 IN denotes via
T385 332-343 NN denotes replication
T384 326-331 NN denotes HIV-1
T383 323-325 IN denotes of
T382 312-322 NN denotes regulation
T381 308-311 NN denotes MTb
T380 305-307 IN denotes in
T379 300-304 NN denotes role
T378 292-299 JJ denotes crucial
T377 290-291 DT denotes a
T376 284-289 VB denotes plays
T375 278-283 NN denotes NFAT5
T374 274-277 CC denotes and
T373 272-273 -COMMA- denotes ,
T372 262-272 NN denotes expression
T371 254-261 NN denotes protein
T370 250-253 CC denotes and
T369 245-249 NN denotes gene
T368 239-244 NN denotes NFAT5
T367 231-238 VB denotes induces
T366 221-230 NN denotes infection
T365 217-220 NN denotes MTb
T364 214-216 TO denotes to
T363 205-213 NN denotes response
T362 198-204 JJ denotes immune
T361 191-197 JJ denotes innate
T360 187-190 DT denotes the
T359 185-186 -COMMA- denotes ,
T358 181-185 RB denotes Thus
T357 169-179 NN denotes expression
T356 164-168 NN denotes gene
T355 158-163 NN denotes NFAT5
T354 146-157 JJ denotes MTb-induced
T353 137-145 VB denotes inhibits
T352 123-136 RB denotes significantly
T351 121-122 -COMMA- denotes ,
T350 116-121 NN denotes TRAF6
T349 112-115 CC denotes and
T348 110-111 -COMMA- denotes ,
T347 105-110 NN denotes IRAK1
T346 103-104 -COMMA- denotes ,
T345 98-103 NN denotes MyD88
T344 88-97 NN denotes molecules
T343 78-87 VB denotes signaling
T342 67-77 JJ denotes downstream
T341 63-66 DT denotes the
T340 53-62 VB denotes including
T339 51-52 -COMMA- denotes ,
T338 42-51 NN denotes monocytes
T337 36-41 JJ denotes human
T336 33-35 IN denotes in
T335 25-32 NN denotes pathway
T334 21-24 NN denotes TLR
T333 17-20 DT denotes the
T332 14-16 IN denotes of
T331 3-13 NN denotes components
R161 T331 T332 arg1Of components,of
R162 T335 T332 arg2Of pathway,of
R163 T335 T333 arg1Of pathway,the
R164 T335 T334 arg1Of pathway,TLR
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene
R188 T363 T360 arg1Of response,the
R189 T363 T361 arg1Of response,innate
R190 T363 T362 arg1Of response,immune
R191 T363 T364 arg1Of response,to
R192 T363 T367 arg1Of response,induces
R193 T366 T364 arg2Of infection,to
R194 T366 T365 arg1Of infection,MTb
R195 T367 T358 arg1Of induces,Thus
R196 T367 T359 arg1Of induces,","
R197 T367 T374 arg1Of induces,and
R198 T369 T370 arg1Of gene,and
R199 T371 T370 arg2Of protein,and
R200 T372 T367 arg2Of expression,induces
R201 T372 T368 arg1Of expression,NFAT5
R202 T372 T369 arg1Of expression,gene
R203 T372 T371 arg1Of expression,protein
R204 T374 T373 arg1Of and,","
R205 T375 T376 arg1Of NFAT5,plays
R206 T376 T374 arg2Of plays,and
R207 T376 T380 arg1Of plays,in
R208 T376 T386 arg1Of plays,via
R209 T379 T376 arg2Of role,plays
R210 T379 T377 arg1Of role,a
R211 T379 T378 arg1Of role,crucial
R212 T382 T380 arg2Of regulation,in
R213 T382 T381 arg1Of regulation,MTb
R214 T382 T383 arg1Of regulation,of
R215 T385 T383 arg2Of replication,of
R216 T385 T384 arg1Of replication,HIV-1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 98-103 Protein denotes MyD88
T90 105-110 Protein denotes IRAK1
T91 116-121 Protein denotes TRAF6
T92 158-163 Protein denotes NFAT5
T93 239-244 Protein denotes NFAT5
T94 278-283 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 158-163 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T416 239-244 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T417 278-283 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 98-103 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 116-121 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T111 191-213 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T110 191-213 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T109 191-213 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T108 191-213 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T106 164-179 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 78-87 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T97 312-322 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T114 198-213 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T113 191-213 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T112 191-213 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response

simple1

Id Subject Object Predicate Lexical cue
T172 98-103 Protein denotes MyD88
T173 105-110 Protein denotes IRAK1
T174 116-121 Protein denotes TRAF6
T175 158-163 Protein denotes NFAT5
T176 239-244 Protein denotes NFAT5
T177 278-283 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 98-103 Protein denotes MyD88
T760 105-110 Protein denotes IRAK1
T761 116-121 Protein denotes TRAF6
T762 158-163 Protein denotes NFAT5
T763 278-283 Protein denotes NFAT5
T764 239-244 Protein denotes NFAT5
T772 146-157 Positive_regulation denotes MTb-induced
T773 137-145 Negative_regulation denotes inhibits
T774 169-179 Gene_expression denotes expression
T775 231-238 Positive_regulation denotes induces
T776 262-272 Gene_expression denotes expression
R587 T762 T774 themeOf NFAT5,expression
R589 T764 T775 themeOf NFAT5,induces
R590 T764 T776 themeOf NFAT5,expression
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced
R595 T776 T775 themeOf expression,induces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 98-103 Protein denotes MyD88
T446 105-110 Protein denotes IRAK1
T447 116-121 Protein denotes TRAF6
T448 158-163 Protein denotes NFAT5
T449 278-283 Protein denotes NFAT5
T450 239-244 Protein denotes NFAT5
T458 169-179 Gene_expression denotes expression
T459 137-145 Negative_regulation denotes inhibits
T460 146-157 Positive_regulation denotes MTb-induced
T461 262-272 Gene_expression denotes expression
T463 231-238 Positive_regulation denotes induces
R512 T448 T458 themeOf NFAT5,expression
R514 T450 T463 themeOf NFAT5,induces
R515 T450 T461 themeOf NFAT5,expression
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced
R522 T461 T463 themeOf expression,induces

DLUT931

Id Subject Object Predicate Lexical cue
T440 231-238 Positive_regulation denotes induces
T438 262-272 Gene_expression denotes expression
T437 137-145 Negative_regulation denotes inhibits
T436 146-157 Positive_regulation denotes MTb-induced
T435 169-179 Gene_expression denotes expression
T425 98-103 Protein denotes MyD88
T426 105-110 Protein denotes IRAK1
T427 116-121 Protein denotes TRAF6
T428 158-163 Protein denotes NFAT5
T429 278-283 Protein denotes NFAT5
T430 239-244 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R243 T438 T440 themeOf expression,induces
R504 T428 T435 themeOf NFAT5,expression
R506 T430 T438 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T822 217-230 Regulation denotes MTb infection
T820 98-179 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T818 254-272 Gene_expression denotes protein expression
T817 146-179 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 88-97 Entity denotes molecules
T778 239-244 Protein denotes NFAT5
T779 217-220 Protein denotes MTb
T781 98-122 Protein denotes MyD88, IRAK1, and TRAF6,
T783 308-311 Protein denotes MTb
T784 239-249 Protein denotes NFAT5 gene
T791 36-52 Entity denotes human monocytes,
T792 105-111 Protein denotes IRAK1,
T793 254-261 Protein denotes protein
T794 158-163 Protein denotes NFAT5
T799 278-283 Protein denotes NFAT5
T801 146-157 Protein denotes MTb-induced
T802 116-121 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R596 T779 T822 themeOf MTb,MTb infection
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R601 T793 T818 themeOf protein,protein expression
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T727 344-347 IN denotes via
T726 332-343 NN denotes replication
T725 326-331 JJ denotes HIV-1
T724 323-325 IN denotes of
T723 312-322 NN denotes regulation
T722 308-311 NNP denotes MTb
T721 305-307 IN denotes in
T720 300-304 NN denotes role
T719 292-299 JJ denotes crucial
T718 290-291 DT denotes a
T717 284-289 VBZ denotes plays
T716 278-283 NNP denotes NFAT5
T715 274-277 CC denotes and
T714 272-273 , denotes ,
T713 262-272 NN denotes expression
T712 254-261 NN denotes protein
T711 250-253 CC denotes and
T710 245-249 NN denotes gene
T709 239-244 NNP denotes NFAT5
T708 231-238 VBZ denotes induces
T707 221-230 NN denotes infection
T706 217-220 NNP denotes MTb
T705 214-216 TO denotes to
T704 205-213 NN denotes response
T703 198-204 JJ denotes immune
T702 191-197 NN denotes innate
T701 187-190 DT denotes the
T700 185-186 , denotes ,
T699 181-185 RB denotes Thus
T698 179-180 . denotes .
T697 169-179 NN denotes expression
T696 164-168 NN denotes gene
T695 158-163 CD denotes NFAT5
T694 146-157 JJ denotes MTb-induced
T693 137-145 VBZ denotes inhibits
T692 123-136 RB denotes significantly
T691 121-122 , denotes ,
T690 116-121 NNP denotes TRAF6
T689 112-115 CC denotes and
T688 110-111 , denotes ,
T687 105-110 NNP denotes IRAK1
T686 103-104 , denotes ,
T685 98-103 NNP denotes MyD88
T684 88-97 NNS denotes molecules
T683 78-87 VBG denotes signaling
T671 3-13 NNS denotes components
T672 14-16 IN denotes of
T673 17-20 DT denotes the
T674 21-24 NNP denotes TLR
T675 25-32 NN denotes pathway
T676 33-35 IN denotes in
T677 36-41 JJ denotes human
T678 42-51 NNS denotes monocytes
T679 51-52 , denotes ,
T680 53-62 VBG denotes including
T681 63-66 DT denotes the
T682 67-77 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R398 T699 T708 advmod Thus,induces
R399 T700 T708 punct ",",induces
R400 T701 T704 det the,response
R401 T702 T704 amod innate,response
R402 T703 T704 amod immune,response
R403 T704 T708 nsubj response,induces
R404 T705 T704 prep to,response
R405 T706 T707 compound MTb,infection
R406 T707 T705 pobj infection,to
R407 T708 T708 ROOT induces,induces
R408 T709 T710 compound NFAT5,gene
R409 T710 T708 dobj gene,induces
R410 T711 T710 cc and,gene
R411 T712 T713 compound protein,expression
R412 T713 T710 conj expression,gene
R413 T714 T708 punct ",",induces
R414 T715 T708 cc and,induces
R415 T716 T717 nsubj NFAT5,plays
R416 T717 T708 conj plays,induces
R417 T718 T720 det a,role
R418 T719 T720 amod crucial,role
R419 T720 T717 dobj role,plays
R420 T721 T720 prep in,role
R421 T722 T723 compound MTb,regulation
R422 T723 T721 pobj regulation,in
R423 T724 T723 prep of,regulation
R424 T725 T726 compound HIV-1,replication
R425 T726 T724 pobj replication,of
R426 T727 T717 prep via,plays
R570 T672 T671 prep of,components
R571 T673 T675 det the,pathway
R572 T674 T675 compound TLR,pathway
R573 T675 T672 pobj pathway,of
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T154 231-238 Positive_regulation denotes induces
T152 262-272 Gene_expression denotes expression
T151 308-311 Protein denotes MTb
T150 278-283 Protein denotes NFAT5
T149 239-249 Protein denotes NFAT5 gene
T148 137-145 Negative_regulation denotes inhibits
T147 137-145 Negative_regulation denotes inhibits
T146 137-145 Negative_regulation denotes inhibits
T145 146-157 Positive_regulation denotes MTb-induced
T144 169-179 Gene_expression denotes expression
T140 158-168 Protein denotes NFAT5 gene
T139 116-121 Protein denotes TRAF6
T138 105-110 Protein denotes IRAK1
T137 98-103 Protein denotes MyD88
T136 21-24 Protein denotes TLR
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits
R34 T149 T152 themeOf NFAT5 gene,expression
R37 T152 T154 themeOf expression,induces

testone

Id Subject Object Predicate Lexical cue
T30 262-272 Gene_expression denotes expression
T29 231-238 Positive_regulation denotes induces
T28 169-179 Gene_expression denotes expression
T27 150-157 Positive_regulation denotes induced
T26 137-145 Negative_regulation denotes inhibits
T21 278-283 Protein denotes NFAT5
T20 239-244 Protein denotes NFAT5
T19 158-163 Protein denotes NFAT5
T18 116-121 Protein denotes TRAF6
T17 105-110 Protein denotes IRAK1
T16 98-103 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R5 T20 T30 themeOf NFAT5,expression
R7 T21 T29 themeOf NFAT5,induces
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R10 T30 T29 themeOf expression,induces
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T41 278-283 Protein denotes NFAT5
T40 239-244 Protein denotes NFAT5
T39 158-163 Protein denotes NFAT5
T38 116-121 Protein denotes TRAF6
T37 105-110 Protein denotes IRAK1
T36 98-103 Protein denotes MyD88
T54 278-283 Protein denotes NFAT5
T53 262-272 Gene_expression denotes expression
T52 239-244 Protein denotes NFAT5
T51 158-163 Protein denotes NFAT5
T50 116-121 Protein denotes TRAF6
T49 105-110 Protein denotes IRAK1
T48 98-103 Protein denotes MyD88
R14 T52 T53 themeOf NFAT5,expression