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PMC:3320587 / 1001-1206 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T361 198-204 JJ denotes innate
T360 194-197 DT denotes the
T359 192-193 -COMMA- denotes ,
T358 188-192 RB denotes Thus
T357 176-186 NN denotes expression
T356 171-175 NN denotes gene
T355 165-170 NN denotes NFAT5
T354 153-164 JJ denotes MTb-induced
T353 144-152 VB denotes inhibits
T352 130-143 RB denotes significantly
T351 128-129 -COMMA- denotes ,
T350 123-128 NN denotes TRAF6
T349 119-122 CC denotes and
T348 117-118 -COMMA- denotes ,
T347 112-117 NN denotes IRAK1
T346 110-111 -COMMA- denotes ,
T345 105-110 NN denotes MyD88
T344 95-104 NN denotes molecules
T343 85-94 VB denotes signaling
T342 74-84 JJ denotes downstream
T341 70-73 DT denotes the
T340 60-69 VB denotes including
T339 58-59 -COMMA- denotes ,
T338 49-58 NN denotes monocytes
T337 43-48 JJ denotes human
T336 40-42 IN denotes in
T335 32-39 NN denotes pathway
T334 28-31 NN denotes TLR
T333 24-27 DT denotes the
T332 21-23 IN denotes of
T331 10-20 NN denotes components
T330 6-9 JJ denotes key
T329 3-5 IN denotes of
R159 T331 T329 arg2Of components,of
R160 T331 T330 arg1Of components,key
R161 T331 T332 arg1Of components,of
R162 T335 T332 arg2Of pathway,of
R163 T335 T333 arg1Of pathway,the
R164 T335 T334 arg1Of pathway,TLR
R165 T335 T336 arg1Of pathway,in
R166 T338 T336 arg2Of monocytes,in
R167 T338 T337 arg1Of monocytes,human
R168 T338 T339 arg1Of monocytes,","
R169 T338 T340 arg1Of monocytes,including
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R176 T349 T340 arg2Of and,including
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 105-110 Protein denotes MyD88
T90 112-117 Protein denotes IRAK1
T91 123-128 Protein denotes TRAF6
T92 165-170 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 165-170 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 105-110 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 123-128 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T106 171-186 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 85-94 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

simple1

Id Subject Object Predicate Lexical cue
T172 105-110 Protein denotes MyD88
T173 112-117 Protein denotes IRAK1
T174 123-128 Protein denotes TRAF6
T175 165-170 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 105-110 Protein denotes MyD88
T760 112-117 Protein denotes IRAK1
T761 123-128 Protein denotes TRAF6
T762 165-170 Protein denotes NFAT5
T772 153-164 Positive_regulation denotes MTb-induced
T773 144-152 Negative_regulation denotes inhibits
T774 176-186 Gene_expression denotes expression
R587 T762 T774 themeOf NFAT5,expression
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 105-110 Protein denotes MyD88
T446 112-117 Protein denotes IRAK1
T447 123-128 Protein denotes TRAF6
T448 165-170 Protein denotes NFAT5
T458 176-186 Gene_expression denotes expression
T459 144-152 Negative_regulation denotes inhibits
T460 153-164 Positive_regulation denotes MTb-induced
R512 T448 T458 themeOf NFAT5,expression
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T437 144-152 Negative_regulation denotes inhibits
T436 153-164 Positive_regulation denotes MTb-induced
T435 176-186 Gene_expression denotes expression
T425 105-110 Protein denotes MyD88
T426 112-117 Protein denotes IRAK1
T427 123-128 Protein denotes TRAF6
T428 165-170 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T820 105-186 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 153-186 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 95-104 Entity denotes molecules
T781 105-129 Protein denotes MyD88, IRAK1, and TRAF6,
T791 43-59 Entity denotes human monocytes,
T792 112-118 Protein denotes IRAK1,
T794 165-170 Protein denotes NFAT5
T801 153-164 Protein denotes MTb-induced
T802 123-128 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T702 198-204 NN denotes innate
T701 194-197 DT denotes the
T700 192-193 , denotes ,
T699 188-192 RB denotes Thus
T698 186-187 . denotes .
T697 176-186 NN denotes expression
T696 171-175 NN denotes gene
T695 165-170 CD denotes NFAT5
T694 153-164 JJ denotes MTb-induced
T693 144-152 VBZ denotes inhibits
T692 130-143 RB denotes significantly
T691 128-129 , denotes ,
T690 123-128 NNP denotes TRAF6
T689 119-122 CC denotes and
T688 117-118 , denotes ,
T687 112-117 NNP denotes IRAK1
T686 110-111 , denotes ,
T685 105-110 NNP denotes MyD88
T684 95-104 NNS denotes molecules
T683 85-94 VBG denotes signaling
T669 3-5 IN denotes of
T670 6-9 JJ denotes key
T671 10-20 NNS denotes components
T672 21-23 IN denotes of
T673 24-27 DT denotes the
T674 28-31 NNP denotes TLR
T675 32-39 NN denotes pathway
T676 40-42 IN denotes in
T677 43-48 JJ denotes human
T678 49-58 NNS denotes monocytes
T679 58-59 , denotes ,
T680 60-69 VBG denotes including
T681 70-73 DT denotes the
T682 74-84 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R383 T684 T680 pobj molecules,including
R384 T685 T680 pobj MyD88,including
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R568 T670 T671 amod key,components
R569 T671 T669 pobj components,of
R570 T672 T671 prep of,components
R571 T673 T675 det the,pathway
R572 T674 T675 compound TLR,pathway
R573 T675 T672 pobj pathway,of
R574 T676 T675 prep in,pathway
R575 T677 T678 amod human,monocytes
R576 T678 T676 pobj monocytes,in
R577 T679 T678 punct ",",monocytes
R578 T680 T678 prep including,monocytes
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T148 144-152 Negative_regulation denotes inhibits
T147 144-152 Negative_regulation denotes inhibits
T146 144-152 Negative_regulation denotes inhibits
T145 153-164 Positive_regulation denotes MTb-induced
T144 176-186 Gene_expression denotes expression
T140 165-175 Protein denotes NFAT5 gene
T139 123-128 Protein denotes TRAF6
T138 112-117 Protein denotes IRAK1
T137 105-110 Protein denotes MyD88
T136 28-31 Protein denotes TLR
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T28 176-186 Gene_expression denotes expression
T27 157-164 Positive_regulation denotes induced
T26 144-152 Negative_regulation denotes inhibits
T19 165-170 Protein denotes NFAT5
T18 123-128 Protein denotes TRAF6
T17 112-117 Protein denotes IRAK1
T16 105-110 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T39 165-170 Protein denotes NFAT5
T38 123-128 Protein denotes TRAF6
T37 112-117 Protein denotes IRAK1
T36 105-110 Protein denotes MyD88
T51 165-170 Protein denotes NFAT5
T50 123-128 Protein denotes TRAF6
T49 112-117 Protein denotes IRAK1
T48 105-110 Protein denotes MyD88