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PMC:3317373 / 913-1203 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T243 269-279 JJ denotes aggressive
T242 264-268 RB denotes more
T241 257-263 VB denotes induce
T240 253-256 MD denotes may
T239 248-252 NN denotes Nrf2
T238 245-247 IN denotes of
T237 237-244 NN denotes absence
T236 233-236 DT denotes the
T235 228-232 IN denotes that
T234 220-227 VB denotes suggest
T233 212-219 NN denotes results
T232 206-211 DT denotes These
T231 194-204 NN denotes astrocytes
T230 191-193 JJ denotes WT
T229 188-190 IN denotes in
T228 183-187 DT denotes that
T227 178-182 IN denotes than
T226 167-177 NN denotes astrocytes
T225 164-166 NN denotes KO
T224 159-163 NN denotes Nrf2
T223 156-158 IN denotes in
T222 146-155 JJ denotes prominent
T221 141-145 RB denotes more
T220 136-140 RB denotes much
T219 132-135 VB denotes was
T218 123-131 NN denotes tendency
T217 118-122 JJ denotes such
T216 114-117 CC denotes And
T215 104-112 VB denotes elevated
T214 99-103 RB denotes also
T213 94-98 VB denotes were
T212 89-93 NN denotes MMP9
T211 86-88 IN denotes of
T210 77-85 NN denotes activity
T209 73-76 CC denotes and
T208 62-72 NN denotes expression
T207 58-61 DT denotes The
T206 49-56 NN denotes scratch
T205 43-48 IN denotes after
T204 41-42 NN denotes h
T203 38-40 CD denotes 24
T202 35-37 IN denotes at
T201 23-34 VB denotes upregulated
T200 18-22 VB denotes were
T199 12-17 IN denotes above
T198 2-11 VB denotes mentioned
R151 T198 T199 arg1Of mentioned,above
R152 T201 T200 arg2Of upregulated,were
R153 T201 T202 arg1Of upregulated,at
R154 T204 T202 arg2Of h,at
R155 T204 T203 arg1Of h,24
R156 T204 T205 arg1Of h,after
R157 T206 T205 arg2Of scratch,after
R158 T208 T209 arg1Of expression,and
R159 T209 T207 arg1Of and,The
R160 T209 T211 arg1Of and,of
R161 T209 T213 arg1Of and,were
R162 T209 T215 arg2Of and,elevated
R163 T210 T209 arg2Of activity,and
R164 T212 T211 arg2Of MMP9,of
R165 T215 T213 arg2Of elevated,were
R166 T215 T214 arg1Of elevated,also
R167 T218 T217 arg1Of tendency,such
R168 T218 T219 arg1Of tendency,was
R169 T218 T222 arg1Of tendency,prominent
R170 T219 T216 arg1Of was,And
R171 T221 T220 arg1Of more,much
R172 T222 T219 arg2Of prominent,was
R173 T222 T221 arg1Of prominent,more
R174 T222 T223 arg1Of prominent,in
R175 T222 T227 arg1Of prominent,than
R176 T226 T223 arg2Of astrocytes,in
R177 T226 T224 arg1Of astrocytes,Nrf2
R178 T226 T225 arg1Of astrocytes,KO
R179 T228 T227 arg2Of that,than
R180 T228 T229 arg1Of that,in
R181 T231 T229 arg2Of astrocytes,in
R182 T231 T230 arg1Of astrocytes,WT
R183 T233 T232 arg1Of results,These
R184 T233 T234 arg1Of results,suggest
R185 T237 T236 arg1Of absence,the
R186 T237 T238 arg1Of absence,of
R187 T237 T240 arg1Of absence,may
R188 T237 T241 arg1Of absence,induce
R189 T239 T238 arg2Of Nrf2,of
R190 T241 T234 arg2Of induce,suggest
R191 T241 T235 arg1Of induce,that
R192 T241 T240 arg2Of induce,may
R194 T243 T242 arg1Of aggressive,more

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T47 89-93 Protein denotes MMP9

sentences

Id Subject Object Predicate Lexical cue
T33 114-205 Sentence denotes And such tendency was much more prominent in Nrf2 KO astrocytes than that in WT astrocytes.
T32 58-113 Sentence denotes The expression and activity of MMP9 were also elevated.
T10 58-113 Sentence denotes The expression and activity of MMP9 were also elevated.
T11 114-205 Sentence denotes And such tendency was much more prominent in Nrf2 KO astrocytes than that in WT astrocytes.

simple1

Id Subject Object Predicate Lexical cue
T264 89-93 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T559 89-93 Protein denotes MMP9
T560 104-112 Positive_regulation denotes elevated
T561 62-72 Gene_expression denotes expression
R446 T559 T561 themeOf MMP9,expression
R447 T561 T560 themeOf expression,elevated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T281 62-72 Gene_expression denotes expression
T272 89-93 Protein denotes MMP9
T273 104-112 Positive_regulation denotes elevated
R206 T281 T273 themeOf expression,elevated
R443 T272 T281 themeOf MMP9,expression

DLUT931

Id Subject Object Predicate Lexical cue
T278 89-93 Protein denotes MMP9
T279 62-72 Gene_expression denotes expression
T280 104-112 Positive_regulation denotes elevated
R444 T278 T279 themeOf MMP9,expression
R445 T279 T280 themeOf expression,elevated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T589 86-93 Protein denotes of MMP9
T562 41-56 Entity denotes h after scratch
T565 159-177 Protein denotes Nrf2 KO astrocytes
T570 159-177 Entity denotes Nrf2 KO astrocytes
T571 159-163 Protein denotes Nrf2
T572 191-204 Entity denotes WT astrocytes

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T514 269-279 JJ denotes aggressive
T513 264-268 RBR denotes more
T512 257-263 VB denotes induce
T511 253-256 MD denotes may
T510 248-252 NNP denotes Nrf2
T509 245-247 IN denotes of
T508 237-244 NN denotes absence
T507 233-236 DT denotes the
T506 228-232 IN denotes that
T505 220-227 VBP denotes suggest
T504 212-219 NNS denotes results
T503 206-211 DT denotes These
T502 204-205 . denotes .
T501 194-204 NNS denotes astrocytes
T500 191-193 NNP denotes WT
T499 188-190 IN denotes in
T498 183-187 DT denotes that
T497 178-182 IN denotes than
T496 167-177 NNS denotes astrocytes
T495 164-166 NNP denotes KO
T494 159-163 NNP denotes Nrf2
T493 156-158 IN denotes in
T492 146-155 JJ denotes prominent
T491 141-145 JJR denotes more
T490 136-140 RB denotes much
T489 132-135 VBD denotes was
T488 123-131 NN denotes tendency
T487 118-122 JJ denotes such
T486 114-117 CC denotes And
T485 112-113 . denotes .
T484 104-112 VBN denotes elevated
T483 99-103 RB denotes also
T482 94-98 VBD denotes were
T481 89-93 CD denotes MMP9
T480 86-88 IN denotes of
T479 77-85 NN denotes activity
T478 73-76 CC denotes and
T477 62-72 NN denotes expression
T476 58-61 DT denotes The
T475 56-57 . denotes .
T474 49-56 NN denotes scratch
T473 43-48 IN denotes after
T472 41-42 NN denotes h
T471 38-40 CD denotes 24
T470 35-37 IN denotes at
T469 23-34 VBN denotes upregulated
T468 18-22 VBD denotes were
T467 12-17 IN denotes above
T466 2-11 VBN denotes mentioned
R369 T467 T466 advmod above,mentioned
R370 T468 T469 auxpass were,upregulated
R371 T469 T469 ROOT upregulated,upregulated
R372 T470 T469 prep at,upregulated
R373 T471 T472 nummod 24,h
R374 T472 T470 pobj h,at
R375 T473 T469 prep after,upregulated
R376 T474 T473 pobj scratch,after
R377 T475 T469 punct .,upregulated
R378 T476 T477 det The,expression
R379 T477 T484 nsubjpass expression,elevated
R380 T478 T477 cc and,expression
R381 T479 T477 conj activity,expression
R382 T480 T477 prep of,expression
R383 T481 T480 pobj MMP9,of
R384 T482 T484 auxpass were,elevated
R385 T483 T484 advmod also,elevated
R386 T484 T484 ROOT elevated,elevated
R387 T485 T484 punct .,elevated
R388 T486 T489 cc And,was
R389 T487 T488 amod such,tendency
R390 T488 T489 nsubj tendency,was
R391 T489 T489 ROOT was,was
R392 T490 T491 advmod much,more
R393 T491 T492 advmod more,prominent
R394 T492 T489 acomp prominent,was
R395 T493 T492 prep in,prominent
R396 T494 T495 compound Nrf2,KO
R397 T495 T496 compound KO,astrocytes
R398 T496 T493 pobj astrocytes,in
R399 T497 T492 prep than,prominent
R400 T498 T497 pobj that,than
R401 T499 T498 prep in,that
R402 T500 T501 compound WT,astrocytes
R403 T501 T499 pobj astrocytes,in
R404 T502 T489 punct .,was
R405 T503 T504 det These,results
R406 T504 T505 nsubj results,suggest
R407 T505 T505 ROOT suggest,suggest
R408 T506 T512 mark that,induce
R409 T507 T508 det the,absence
R410 T508 T512 nsubj absence,induce
R411 T509 T508 prep of,absence
R412 T510 T509 pobj Nrf2,of
R413 T511 T512 aux may,induce
R414 T512 T505 ccomp induce,suggest
R415 T513 T514 advmod more,aggressive

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T314 257-263 Positive_regulation denotes induce
T311 248-252 Protein denotes Nrf2
T310 159-166 Protein denotes Nrf2 KO
T309 104-112 Positive_regulation denotes elevated
T308 62-72 Gene_expression denotes expression
T307 89-93 Protein denotes MMP9
T306 23-34 Positive_regulation denotes upregulated
R213 T307 T308 themeOf MMP9,expression
R214 T308 T309 themeOf expression,elevated

testone

Id Subject Object Predicate Lexical cue
T11 237-244 Negative_regulation denotes absence
T10 89-93 Protein denotes MMP9

test3

Id Subject Object Predicate Lexical cue
T22 237-244 Negative_regulation denotes absence
T21 89-93 Protein denotes MMP9
T16 89-93 Protein denotes MMP9