PMC:3317373 / 8497-8802
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3572 | 303-304 | -RRB- | denotes | ) |
| T3571 | 300-303 | NN | denotes | kDa |
| T3570 | 297-299 | CD | denotes | 92 |
| T3569 | 295-296 | -COMMA- | denotes | , |
| T3568 | 292-295 | NNP | denotes | USA |
| T3567 | 290-291 | -COMMA- | denotes | , |
| T3566 | 288-290 | NNP | denotes | CA |
| T3565 | 286-287 | -COMMA- | denotes | , |
| T3564 | 273-286 | NNP | denotes | Biotechnology |
| T3563 | 268-272 | NNP | denotes | Cruz |
| T3562 | 262-267 | NNP | denotes | Santa |
| T3561 | 260-261 | -COMMA- | denotes | , |
| T3560 | 253-260 | NN | denotes | sc-6841 |
| T3559 | 252-253 | -LRB- | denotes | ( |
| T3558 | 250-251 | -RRB- | denotes | ) |
| T3557 | 246-250 | NN | denotes | MMP9 |
| T3556 | 245-246 | -LRB- | denotes | ( |
| T3555 | 243-244 | CD | denotes | 9 |
| T3554 | 226-242 | NN | denotes | metallopeptidase |
| T3553 | 214-225 | JJ | denotes | anti-matrix |
| T3552 | 210-213 | CC | denotes | and |
| T3551 | 208-209 | -RRB- | denotes | ) |
| T3550 | 205-208 | NN | denotes | kDa |
| T3549 | 202-204 | CD | denotes | 43 |
| T3548 | 200-201 | -COMMA- | denotes | , |
| T3547 | 197-200 | NNP | denotes | USA |
| T3546 | 195-196 | -COMMA- | denotes | , |
| T3545 | 193-195 | NNP | denotes | CA |
| T3544 | 191-192 | -COMMA- | denotes | , |
| T3543 | 178-191 | NNP | denotes | Biotechnology |
| T3542 | 173-177 | NNP | denotes | Cruz |
| T3541 | 167-172 | NNP | denotes | Santa |
| T3540 | 165-166 | -COMMA- | denotes | , |
| T3539 | 156-165 | NN | denotes | sc-130657 |
| T3538 | 155-156 | -LRB- | denotes | ( |
| T3537 | 142-154 | JJ | denotes | anti-β-actin |
| T3536 | 140-141 | -COLON- | denotes | : |
| T3535 | 136-140 | VB | denotes | used |
| T3534 | 131-135 | VB | denotes | were |
| T3533 | 120-130 | NN | denotes | antibodies |
| T3532 | 110-119 | VB | denotes | following |
| T3531 | 106-109 | DT | denotes | the |
| T3530 | 102-105 | CC | denotes | and |
| T3529 | 100-101 | -COMMA- | denotes | , |
| T3528 | 97-100 | NN | denotes | 4°C |
| T3527 | 94-96 | IN | denotes | at |
| T3526 | 84-93 | RB | denotes | overnight |
| T3525 | 77-83 | NN | denotes | buffer |
| T3524 | 70-76 | NN | denotes | saline |
| T3523 | 67-69 | IN | denotes | in |
| T3522 | 62-66 | NN | denotes | milk |
| T3521 | 58-61 | JJ | denotes | dry |
| T3520 | 51-57 | JJ | denotes | nonfat |
| T3519 | 49-50 | NN | denotes | % |
| T3518 | 48-49 | CD | denotes | 5 |
| T3517 | 43-47 | IN | denotes | with |
| T3516 | 35-42 | VB | denotes | blocked |
| T3515 | 30-34 | VB | denotes | were |
| T3514 | 20-29 | NN | denotes | membranes |
| T3513 | 18-19 | -COMMA- | denotes | , |
| T3512 | 4-18 | NN | denotes | immunoblotting |
| T3511 | 0-3 | IN | denotes | For |
| R3022 | T3512 | T3511 | arg2Of | immunoblotting,For |
| R3023 | T3514 | T3515 | arg1Of | membranes,were |
| R3024 | T3514 | T3516 | arg2Of | membranes,blocked |
| R3025 | T3516 | T3511 | arg1Of | blocked,For |
| R3026 | T3516 | T3513 | arg1Of | blocked,"," |
| R3027 | T3516 | T3515 | arg2Of | blocked,were |
| R3028 | T3516 | T3517 | arg1Of | blocked,with |
| R3029 | T3516 | T3526 | arg1Of | blocked,overnight |
| R3030 | T3516 | T3527 | arg1Of | blocked,at |
| R3031 | T3516 | T3530 | arg1Of | blocked,and |
| R3032 | T3518 | T3519 | arg1Of | 5,% |
| R3033 | T3522 | T3517 | arg2Of | milk,with |
| R3034 | T3522 | T3518 | arg1Of | milk,5 |
| R3035 | T3522 | T3520 | arg1Of | milk,nonfat |
| R3036 | T3522 | T3521 | arg1Of | milk,dry |
| R3037 | T3522 | T3523 | arg1Of | milk,in |
| R3038 | T3525 | T3523 | arg2Of | buffer,in |
| R3039 | T3525 | T3524 | arg1Of | buffer,saline |
| R3040 | T3528 | T3527 | arg2Of | 4°C,at |
| R3041 | T3530 | T3529 | arg1Of | and,"," |
| R3042 | T3530 | T3536 | arg1Of | and,: |
| R3043 | T3530 | T3537 | arg1Of | and,anti-β-actin |
| R3044 | T3530 | T3554 | arg1Of | and,metallopeptidase |
| R3045 | T3533 | T3531 | arg1Of | antibodies,the |
| R3046 | T3533 | T3532 | arg1Of | antibodies,following |
| R3047 | T3533 | T3534 | arg1Of | antibodies,were |
| R3048 | T3533 | T3535 | arg2Of | antibodies,used |
| R3049 | T3535 | T3530 | arg2Of | used,and |
| R3050 | T3535 | T3534 | arg2Of | used,were |
| R3051 | T3537 | T3538 | arg1Of | anti-β-actin,( |
| R3052 | T3537 | T3552 | arg1Of | anti-β-actin,and |
| R3053 | T3539 | T3540 | arg1Of | sc-130657,"," |
| R3054 | T3539 | T3544 | arg1Of | sc-130657,"," |
| R3055 | T3543 | T3540 | arg2Of | Biotechnology,"," |
| R3056 | T3543 | T3541 | arg1Of | Biotechnology,Santa |
| R3057 | T3543 | T3542 | arg1Of | Biotechnology,Cruz |
| R3058 | T3544 | T3538 | arg2Of | ",",( |
| R3059 | T3545 | T3546 | arg1Of | CA,"," |
| R3060 | T3546 | T3548 | arg1Of | ",","," |
| R3061 | T3547 | T3546 | arg2Of | USA,"," |
| R3062 | T3549 | T3548 | arg2Of | 43,"," |
| R3063 | T3550 | T3544 | arg2Of | kDa,"," |
| R3064 | T3550 | T3545 | arg1Of | kDa,CA |
| R3065 | T3550 | T3547 | arg1Of | kDa,USA |
| R3066 | T3550 | T3549 | arg1Of | kDa,43 |
| R3067 | T3551 | T3538 | arg3Of | ),( |
| R3068 | T3552 | T3559 | arg1Of | and,( |
| R3069 | T3554 | T3552 | arg2Of | metallopeptidase,and |
| R3070 | T3554 | T3553 | arg1Of | metallopeptidase,anti-matrix |
| R3071 | T3554 | T3555 | arg1Of | metallopeptidase,9 |
| R3072 | T3554 | T3556 | arg1Of | metallopeptidase,( |
| R3073 | T3557 | T3556 | arg2Of | MMP9,( |
| R3074 | T3558 | T3556 | arg3Of | ),( |
| R3075 | T3560 | T3561 | arg1Of | sc-6841,"," |
| R3076 | T3560 | T3565 | arg1Of | sc-6841,"," |
| R3077 | T3564 | T3561 | arg2Of | Biotechnology,"," |
| R3078 | T3564 | T3562 | arg1Of | Biotechnology,Santa |
| R3079 | T3564 | T3563 | arg1Of | Biotechnology,Cruz |
| R3080 | T3565 | T3559 | arg2Of | ",",( |
| R3081 | T3566 | T3567 | arg1Of | CA,"," |
| R3082 | T3567 | T3569 | arg1Of | ",","," |
| R3083 | T3568 | T3567 | arg2Of | USA,"," |
| R3084 | T3570 | T3569 | arg2Of | 92,"," |
| R3085 | T3571 | T3565 | arg2Of | kDa,"," |
| R3086 | T3571 | T3566 | arg1Of | kDa,CA |
| R3087 | T3571 | T3568 | arg1Of | kDa,USA |
| R3088 | T3571 | T3570 | arg1Of | kDa,92 |
| R3089 | T3572 | T3559 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3385 | 246-250 | Protein | denotes | MMP9 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3687 | 147-154 | http://www.uniprot.org/uniprot/P60709 | denotes | β-actin |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3373 | 62-66 | http://purl.obolibrary.org/obo/UBERON_0001913 | denotes | milk |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3388 | 288-290 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
| T3387 | 193-195 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3672 | 120-130 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T3676 | 288-290 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
| T3675 | 193-195 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3683 | 120-130 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
| T3680 | 120-130 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
| T3679 | 20-29 | http://purl.obolibrary.org/obo/GO_0016020 | denotes | membranes |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3378 | 0-305 | Sentence | denotes | For immunoblotting, membranes were blocked with 5% nonfat dry milk in saline buffer overnight at 4°C, and the following antibodies were used: anti-β-actin (sc-130657, Santa Cruz Biotechnology, CA, USA, 43 kDa) and anti-matrix metallopeptidase 9 (MMP9) (sc-6841, Santa Cruz Biotechnology, CA, USA, 92 kDa). |
| T88 | 0-305 | Sentence | denotes | For immunoblotting, membranes were blocked with 5% nonfat dry milk in saline buffer overnight at 4°C, and the following antibodies were used: anti-β-actin (sc-130657, Santa Cruz Biotechnology, CA, USA, 43 kDa) and anti-matrix metallopeptidase 9 (MMP9) (sc-6841, Santa Cruz Biotechnology, CA, USA, 92 kDa). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3686 | 246-250 | Protein | denotes | MMP9 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3997 | 246-250 | Protein | denotes | MMP9 |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3690 | 246-250 | Protein | denotes | MMP9 |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3689 | 246-250 | Protein | denotes | MMP9 |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4027 | 70-76 | Entity | denotes | saline |
| T4024 | 106-130 | Entity | denotes | the following antibodies |
| T4021 | 246-250 | Protein | denotes | MMP9 |
| T4020 | 214-251 | Protein | denotes | anti-matrix metallopeptidase 9 (MMP9) |
| T4007 | 136-166 | Protein | denotes | used: anti-β-actin (sc-130657, |
| T4006 | 20-29 | Entity | denotes | membranes |
| T4001 | 262-267 | Entity | denotes | Santa |
| T4000 | 167-191 | Entity | denotes | Santa Cruz Biotechnology |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3865 | 205-208 | NN | denotes | kDa |
| T3864 | 202-204 | CD | denotes | 43 |
| T3863 | 200-201 | , | denotes | , |
| T3862 | 197-200 | NNP | denotes | USA |
| T3861 | 195-196 | , | denotes | , |
| T3860 | 193-195 | NNP | denotes | CA |
| T3859 | 191-192 | , | denotes | , |
| T3858 | 178-191 | NNP | denotes | Biotechnology |
| T3857 | 173-177 | NNP | denotes | Cruz |
| T3856 | 167-172 | NNP | denotes | Santa |
| T3855 | 165-166 | , | denotes | , |
| T3854 | 156-165 | JJ | denotes | sc-130657 |
| T3853 | 155-156 | -LRB- | denotes | ( |
| T3852 | 142-154 | JJ | denotes | anti-β-actin |
| T3851 | 140-141 | : | denotes | : |
| T3850 | 136-140 | VBN | denotes | used |
| T3849 | 131-135 | VBD | denotes | were |
| T3848 | 120-130 | NNS | denotes | antibodies |
| T3847 | 110-119 | VBG | denotes | following |
| T3846 | 106-109 | DT | denotes | the |
| T3845 | 102-105 | CC | denotes | and |
| T3844 | 100-101 | , | denotes | , |
| T3843 | 99-100 | NNP | denotes | C |
| T3842 | 98-99 | CD | denotes | ° |
| T3841 | 97-98 | CD | denotes | 4 |
| T3840 | 94-96 | IN | denotes | at |
| T3839 | 84-93 | JJ | denotes | overnight |
| T3838 | 77-83 | NN | denotes | buffer |
| T3837 | 70-76 | NN | denotes | saline |
| T3836 | 67-69 | IN | denotes | in |
| T3835 | 62-66 | NN | denotes | milk |
| T3834 | 58-61 | JJ | denotes | dry |
| T3833 | 51-57 | JJ | denotes | nonfat |
| T3832 | 49-50 | NN | denotes | % |
| T3831 | 48-49 | CD | denotes | 5 |
| T3830 | 43-47 | IN | denotes | with |
| T3829 | 35-42 | VBN | denotes | blocked |
| T3828 | 30-34 | VBD | denotes | were |
| T3827 | 20-29 | NNS | denotes | membranes |
| T3826 | 18-19 | , | denotes | , |
| T3825 | 4-18 | VBG | denotes | immunoblotting |
| T3824 | 0-3 | IN | denotes | For |
| T3888 | 304-305 | . | denotes | . |
| T3887 | 303-304 | -RRB- | denotes | ) |
| T3886 | 300-303 | NN | denotes | kDa |
| T3885 | 297-299 | CD | denotes | 92 |
| T3884 | 295-296 | , | denotes | , |
| T3883 | 292-295 | NNP | denotes | USA |
| T3882 | 290-291 | , | denotes | , |
| T3881 | 288-290 | NNP | denotes | CA |
| T3880 | 286-287 | , | denotes | , |
| T3879 | 273-286 | NNP | denotes | Biotechnology |
| T3878 | 268-272 | NNP | denotes | Cruz |
| T3877 | 262-267 | NNP | denotes | Santa |
| T3876 | 260-261 | , | denotes | , |
| T3875 | 253-260 | JJ | denotes | sc-6841 |
| T3874 | 252-253 | -LRB- | denotes | ( |
| T3873 | 250-251 | -RRB- | denotes | ) |
| T3872 | 246-250 | NNP | denotes | MMP9 |
| T3871 | 245-246 | -LRB- | denotes | ( |
| T3870 | 243-244 | CD | denotes | 9 |
| T3869 | 226-242 | NN | denotes | metallopeptidase |
| T3868 | 214-225 | JJ | denotes | anti-matrix |
| T3867 | 210-213 | CC | denotes | and |
| T3866 | 208-209 | -RRB- | denotes | ) |
| R3318 | T3824 | T3829 | prep | For,blocked |
| R3319 | T3825 | T3824 | pobj | immunoblotting,For |
| R3320 | T3826 | T3829 | punct | ",",blocked |
| R3321 | T3827 | T3829 | nsubjpass | membranes,blocked |
| R3322 | T3828 | T3829 | auxpass | were,blocked |
| R3323 | T3829 | T3829 | ROOT | blocked,blocked |
| R3324 | T3830 | T3829 | prep | with,blocked |
| R3325 | T3831 | T3832 | nummod | 5,% |
| R3326 | T3832 | T3835 | nmod | %,milk |
| R3327 | T3833 | T3835 | amod | nonfat,milk |
| R3328 | T3834 | T3835 | amod | dry,milk |
| R3329 | T3835 | T3830 | pobj | milk,with |
| R3330 | T3836 | T3835 | prep | in,milk |
| R3331 | T3837 | T3838 | compound | saline,buffer |
| R3332 | T3838 | T3839 | compound | buffer,overnight |
| R3333 | T3839 | T3836 | pobj | overnight,in |
| R3355 | T3861 | T3860 | punct | ",",CA |
| R3356 | T3862 | T3860 | conj | USA,CA |
| R3357 | T3863 | T3860 | punct | ",",CA |
| R3358 | T3864 | T3865 | nummod | 43,kDa |
| R3359 | T3865 | T3860 | appos | kDa,CA |
| R3360 | T3866 | T3865 | punct | ),kDa |
| R3361 | T3867 | T3865 | cc | and,kDa |
| R3362 | T3868 | T3869 | amod | anti-matrix,metallopeptidase |
| R3363 | T3869 | T3865 | conj | metallopeptidase,kDa |
| R3364 | T3870 | T3869 | nummod | 9,metallopeptidase |
| R3365 | T3871 | T3872 | punct | (,MMP9 |
| R3366 | T3872 | T3869 | appos | MMP9,metallopeptidase |
| R3367 | T3873 | T3872 | punct | ),MMP9 |
| R3368 | T3874 | T3875 | punct | (,sc-6841 |
| R3369 | T3875 | T3869 | appos | sc-6841,metallopeptidase |
| R3370 | T3876 | T3875 | punct | ",",sc-6841 |
| R3371 | T3877 | T3879 | compound | Santa,Biotechnology |
| R3372 | T3878 | T3879 | compound | Cruz,Biotechnology |
| R3373 | T3879 | T3875 | appos | Biotechnology,sc-6841 |
| R3374 | T3880 | T3879 | punct | ",",Biotechnology |
| R3375 | T3881 | T3879 | conj | CA,Biotechnology |
| R3376 | T3882 | T3881 | punct | ",",CA |
| R3377 | T3883 | T3881 | conj | USA,CA |
| R3378 | T3884 | T3881 | punct | ",",CA |
| R3379 | T3885 | T3886 | nummod | 92,kDa |
| R3380 | T3886 | T3881 | appos | kDa,CA |
| R3381 | T3887 | T3875 | punct | ),sc-6841 |
| R3382 | T3888 | T3854 | punct | .,sc-130657 |
| R3334 | T3840 | T3829 | prep | at,blocked |
| R3335 | T3841 | T3842 | nummod | 4,° |
| R3336 | T3842 | T3843 | nummod | °,C |
| R3337 | T3843 | T3840 | pobj | C,at |
| R3338 | T3844 | T3829 | punct | ",",blocked |
| R3339 | T3845 | T3829 | cc | and,blocked |
| R3340 | T3846 | T3848 | det | the,antibodies |
| R3341 | T3847 | T3848 | amod | following,antibodies |
| R3342 | T3848 | T3850 | nsubjpass | antibodies,used |
| R3343 | T3849 | T3850 | auxpass | were,used |
| R3344 | T3850 | T3829 | conj | used,blocked |
| R3345 | T3851 | T3852 | punct | :,anti-β-actin |
| R3346 | T3852 | T3850 | prep | anti-β-actin,used |
| R3347 | T3853 | T3854 | punct | (,sc-130657 |
| R3348 | T3854 | T3852 | dep | sc-130657,anti-β-actin |
| R3349 | T3855 | T3854 | punct | ",",sc-130657 |
| R3350 | T3856 | T3858 | compound | Santa,Biotechnology |
| R3351 | T3857 | T3858 | compound | Cruz,Biotechnology |
| R3352 | T3858 | T3854 | conj | Biotechnology,sc-130657 |
| R3353 | T3859 | T3858 | punct | ",",Biotechnology |
| R3354 | T3860 | T3858 | conj | CA,Biotechnology |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3693 | 214-244 | Protein | denotes | anti-matrix metallopeptidase 9 |
| T3692 | 149-154 | Protein | denotes | actin |
| T3694 | 246-250 | Protein | denotes | MMP9 |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3370 | 246-250 | Protein | denotes | MMP9 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3372 | 246-250 | Protein | denotes | MMP9 |
| T3371 | 246-250 | Protein | denotes | MMP9 |