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PMC:3317373 / 637-942 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T183 180-182 TO denotes to
T182 170-179 VB denotes performed
T181 166-169 VB denotes was
T180 155-165 NN denotes zymography
T179 147-154 NN denotes Gelatin
T178 136-145 VB denotes evaluated
T177 131-135 RB denotes also
T176 126-130 VB denotes were
T175 121-125 NN denotes MMP9
T174 117-120 CC denotes and
T173 115-116 -COMMA- denotes ,
T172 111-115 NN denotes IL-6
T171 109-110 -COMMA- denotes ,
T170 104-109 NN denotes IL-1β
T169 102-103 -COMMA- denotes ,
T168 97-102 NN denotes TNF-α
T167 94-96 IN denotes of
T166 87-93 NN denotes levels
T165 79-86 NN denotes protein
T164 75-78 CC denotes and
T163 70-74 NN denotes mRNA
T162 66-69 DT denotes The
T161 60-64 NN denotes EMSA
T160 57-59 IN denotes by
T159 47-56 VB denotes evaluated
T158 43-46 VB denotes was
T157 37-42 NN denotes NF-κB
T156 34-36 IN denotes of
T155 25-33 NN denotes activity
T154 13-24 JJ denotes DNA-binding
T153 9-12 DT denotes the
T152 4-8 RB denotes Then
T200 294-298 VB denotes were
T199 288-293 IN denotes above
T198 278-287 VB denotes mentioned
T197 268-277 NN denotes cytokines
T196 252-267 JJ denotes proinflammatory
T195 249-251 IN denotes of
T194 238-248 NN denotes expression
T193 234-237 CC denotes and
T192 228-233 NN denotes NF-κB
T191 225-227 IN denotes of
T190 216-224 NN denotes activity
T189 212-215 DT denotes The
T188 206-210 NN denotes MMP9
T187 203-205 IN denotes of
T186 194-202 NN denotes activity
T185 190-193 DT denotes the
T184 183-189 VB denotes detect
R102 T155 T153 arg1Of activity,the
R103 T155 T154 arg1Of activity,DNA-binding
R104 T155 T156 arg1Of activity,of
R105 T155 T158 arg1Of activity,was
R106 T155 T159 arg2Of activity,evaluated
R107 T157 T156 arg2Of NF-κB,of
R108 T159 T152 arg1Of evaluated,Then
R109 T159 T158 arg2Of evaluated,was
R110 T161 T159 arg1Of EMSA,evaluated
R111 T161 T160 arg2Of EMSA,by
R112 T163 T164 arg1Of mRNA,and
R113 T165 T164 arg2Of protein,and
R114 T166 T162 arg1Of levels,The
R115 T166 T163 arg1Of levels,mRNA
R116 T166 T165 arg1Of levels,protein
R117 T166 T167 arg1Of levels,of
R118 T166 T176 arg1Of levels,were
R119 T166 T178 arg2Of levels,evaluated
R120 T168 T169 arg1Of TNF-α,","
R121 T169 T171 arg1Of ",",","
R122 T170 T169 arg2Of IL-1β,","
R123 T171 T174 arg1Of ",",and
R124 T172 T171 arg2Of IL-6,","
R125 T174 T167 arg2Of and,of
R126 T174 T173 arg1Of and,","
R127 T175 T174 arg2Of MMP9,and
R128 T178 T176 arg2Of evaluated,were
R129 T178 T177 arg1Of evaluated,also
R130 T180 T179 arg1Of zymography,Gelatin
R131 T180 T181 arg1Of zymography,was
R132 T180 T182 arg2Of zymography,performed
R133 T182 T181 arg2Of performed,was
R134 T184 T182 arg3Of detect,performed
R135 T184 T183 arg1Of detect,to
R136 T186 T184 arg2Of activity,detect
R137 T186 T185 arg1Of activity,the
R138 T186 T187 arg1Of activity,of
R139 T188 T187 arg2Of MMP9,of
R140 T190 T189 arg1Of activity,The
R141 T190 T191 arg1Of activity,of
R142 T190 T200 arg1Of activity,were
R144 T192 T193 arg1Of NF-κB,and
R145 T193 T191 arg2Of and,of
R146 T193 T195 arg1Of and,of
R147 T194 T193 arg2Of expression,and
R148 T197 T195 arg2Of cytokines,of
R149 T197 T196 arg1Of cytokines,proinflammatory
R150 T197 T198 arg2Of cytokines,mentioned
R151 T198 T199 arg1Of mentioned,above

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T43 104-109 Protein denotes IL-1β
T44 111-115 Protein denotes IL-6
T45 121-125 Protein denotes MMP9
T46 206-210 Protein denotes MMP9

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T265 97-102 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T266 104-109 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T267 111-115 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-MF

Id Subject Object Predicate Lexical cue
T257 13-24 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding
T258 17-24 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T259 111-115 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T30 147-211 Sentence denotes Gelatin zymography was performed to detect the activity of MMP9.
T29 66-146 Sentence denotes The mRNA and protein levels of TNF-α, IL-1β, IL-6, and MMP9 were also evaluated.
T28 4-65 Sentence denotes Then the DNA-binding activity of NF-κB was evaluated by EMSA.
T6 4-65 Sentence denotes Then the DNA-binding activity of NF-κB was evaluated by EMSA.
T7 66-146 Sentence denotes The mRNA and protein levels of TNF-α, IL-1β, IL-6, and MMP9 were also evaluated.
T8 147-211 Sentence denotes Gelatin zymography was performed to detect the activity of MMP9.

simple1

Id Subject Object Predicate Lexical cue
T263 206-210 Protein denotes MMP9
T260 104-109 Protein denotes IL-1β
T261 111-115 Protein denotes IL-6
T262 121-125 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T555 104-109 Protein denotes IL-1β
T556 111-115 Protein denotes IL-6
T557 121-125 Protein denotes MMP9
T558 206-210 Protein denotes MMP9

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T268 104-109 Protein denotes IL-1β
T269 111-115 Protein denotes IL-6
T270 121-125 Protein denotes MMP9
T271 206-210 Protein denotes MMP9

DLUT931

Id Subject Object Predicate Lexical cue
T274 104-109 Protein denotes IL-1β
T275 111-115 Protein denotes IL-6
T276 121-125 Protein denotes MMP9
T277 206-210 Protein denotes MMP9

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T592 238-287 Gene_expression denotes expression of proinflammatory cytokines mentioned
T584 147-165 Entity denotes Gelatin zymography
T563 203-210 Protein denotes of MMP9
T564 34-42 Protein denotes of NF-κB
T566 111-115 Protein denotes IL-6
T568 228-233 Protein denotes NF-κB
T573 121-125 Protein denotes MMP9
T576 104-116 Protein denotes IL-1β, IL-6,
T578 70-74 Protein denotes mRNA
T581 97-102 Protein denotes TNF-α
T582 79-86 Protein denotes protein
T583 249-277 Protein denotes of proinflammatory cytokines
R450 T583 T592 themeOf of proinflammatory cytokines,expression of proinflammatory cytokines mentioned

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T468 294-298 VBD denotes were
T467 288-293 IN denotes above
T466 278-287 VBN denotes mentioned
T465 268-277 NNS denotes cytokines
T464 252-267 JJ denotes proinflammatory
T463 249-251 IN denotes of
T462 238-248 NN denotes expression
T461 234-237 CC denotes and
T460 228-233 NNP denotes NF-κB
T459 225-227 IN denotes of
T458 216-224 NN denotes activity
T457 212-215 DT denotes The
T456 210-211 . denotes .
T455 206-210 NNP denotes MMP9
T454 203-205 IN denotes of
T453 194-202 NN denotes activity
T452 190-193 DT denotes the
T451 183-189 VB denotes detect
T450 180-182 TO denotes to
T449 170-179 VBN denotes performed
T448 166-169 VBD denotes was
T447 155-165 NN denotes zymography
T446 147-154 NN denotes Gelatin
T445 145-146 . denotes .
T444 136-145 VBN denotes evaluated
T443 131-135 RB denotes also
T442 126-130 VBD denotes were
T441 121-125 NNP denotes MMP9
T440 117-120 CC denotes and
T439 115-116 , denotes ,
T438 111-115 NNP denotes IL-6
T437 109-110 , denotes ,
T436 104-109 NNP denotes IL-1β
T435 102-103 , denotes ,
T434 97-102 NNP denotes TNF-α
T433 94-96 IN denotes of
T432 87-93 NNS denotes levels
T431 79-86 NN denotes protein
T430 75-78 CC denotes and
T429 70-74 NNP denotes mRNA
T428 66-69 DT denotes The
T427 64-65 . denotes .
T426 60-64 NNP denotes EMSA
T425 57-59 IN denotes by
T424 47-56 VBN denotes evaluated
T423 43-46 VBD denotes was
T422 37-42 NN denotes NF-κB
T421 34-36 IN denotes of
T420 25-33 NN denotes activity
T419 13-24 JJ denotes DNA-binding
T418 9-12 DT denotes the
T417 4-8 RB denotes Then
T416 2-3 . denotes .
R319 T417 T424 advmod Then,evaluated
R320 T418 T420 det the,activity
R321 T419 T420 amod DNA-binding,activity
R322 T420 T424 nsubjpass activity,evaluated
R323 T421 T420 prep of,activity
R324 T422 T421 pobj NF-κB,of
R325 T423 T424 auxpass was,evaluated
R326 T424 T424 ROOT evaluated,evaluated
R327 T425 T424 agent by,evaluated
R328 T426 T425 pobj EMSA,by
R329 T427 T424 punct .,evaluated
R330 T428 T429 det The,mRNA
R331 T429 T444 nsubjpass mRNA,evaluated
R332 T430 T429 cc and,mRNA
R333 T431 T432 compound protein,levels
R334 T432 T429 conj levels,mRNA
R335 T433 T432 prep of,levels
R349 T447 T449 nsubjpass zymography,performed
R350 T448 T449 auxpass was,performed
R351 T449 T449 ROOT performed,performed
R352 T450 T451 aux to,detect
R353 T451 T449 advcl detect,performed
R354 T452 T453 det the,activity
R355 T453 T451 dobj activity,detect
R356 T454 T453 prep of,activity
R357 T455 T454 pobj MMP9,of
R358 T456 T449 punct .,performed
R359 T457 T458 det The,activity
R361 T459 T458 prep of,activity
R362 T460 T459 pobj NF-κB,of
R363 T461 T458 cc and,activity
R364 T462 T458 conj expression,activity
R365 T463 T462 prep of,expression
R366 T464 T465 amod proinflammatory,cytokines
R367 T465 T463 pobj cytokines,of
R368 T466 T465 acl mentioned,cytokines
R369 T467 T466 advmod above,mentioned
R336 T434 T433 pobj TNF-α,of
R337 T435 T434 punct ",",TNF-α
R338 T436 T434 conj IL-1β,TNF-α
R339 T437 T436 punct ",",IL-1β
R340 T438 T436 conj IL-6,IL-1β
R341 T439 T438 punct ",",IL-6
R342 T440 T438 cc and,IL-6
R343 T441 T438 conj MMP9,IL-6
R344 T442 T444 auxpass were,evaluated
R345 T443 T444 advmod also,evaluated
R346 T444 T444 ROOT evaluated,evaluated
R347 T445 T444 punct .,evaluated
R348 T446 T447 compound Gelatin,zymography

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T305 228-233 Protein denotes NF-κB
T304 206-210 Protein denotes MMP9
T303 121-125 Protein denotes MMP9
T302 111-115 Protein denotes IL-6
T301 104-109 Protein denotes IL-1β
T300 97-102 Protein denotes TNF-α
T299 37-42 Protein denotes NF-κB

testone

Id Subject Object Predicate Lexical cue
T9 206-210 Protein denotes MMP9
T8 121-125 Protein denotes MMP9
T7 111-115 Protein denotes IL-6
T6 104-109 Protein denotes IL-1β

test3

Id Subject Object Predicate Lexical cue
T20 206-210 Protein denotes MMP9
T19 121-125 Protein denotes MMP9
T18 111-115 Protein denotes IL-6
T17 104-109 Protein denotes IL-1β
T15 206-210 Protein denotes MMP9
T14 121-125 Protein denotes MMP9
T13 111-115 Protein denotes IL-6
T12 104-109 Protein denotes IL-1β