
PMC:3317373 / 637-942
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T183 | 180-182 | TO | denotes | to |
T182 | 170-179 | VB | denotes | performed |
T181 | 166-169 | VB | denotes | was |
T180 | 155-165 | NN | denotes | zymography |
T179 | 147-154 | NN | denotes | Gelatin |
T178 | 136-145 | VB | denotes | evaluated |
T177 | 131-135 | RB | denotes | also |
T176 | 126-130 | VB | denotes | were |
T175 | 121-125 | NN | denotes | MMP9 |
T174 | 117-120 | CC | denotes | and |
T173 | 115-116 | -COMMA- | denotes | , |
T172 | 111-115 | NN | denotes | IL-6 |
T171 | 109-110 | -COMMA- | denotes | , |
T170 | 104-109 | NN | denotes | IL-1β |
T169 | 102-103 | -COMMA- | denotes | , |
T168 | 97-102 | NN | denotes | TNF-α |
T167 | 94-96 | IN | denotes | of |
T166 | 87-93 | NN | denotes | levels |
T165 | 79-86 | NN | denotes | protein |
T164 | 75-78 | CC | denotes | and |
T163 | 70-74 | NN | denotes | mRNA |
T162 | 66-69 | DT | denotes | The |
T161 | 60-64 | NN | denotes | EMSA |
T160 | 57-59 | IN | denotes | by |
T159 | 47-56 | VB | denotes | evaluated |
T158 | 43-46 | VB | denotes | was |
T157 | 37-42 | NN | denotes | NF-κB |
T156 | 34-36 | IN | denotes | of |
T155 | 25-33 | NN | denotes | activity |
T154 | 13-24 | JJ | denotes | DNA-binding |
T153 | 9-12 | DT | denotes | the |
T152 | 4-8 | RB | denotes | Then |
T200 | 294-298 | VB | denotes | were |
T199 | 288-293 | IN | denotes | above |
T198 | 278-287 | VB | denotes | mentioned |
T197 | 268-277 | NN | denotes | cytokines |
T196 | 252-267 | JJ | denotes | proinflammatory |
T195 | 249-251 | IN | denotes | of |
T194 | 238-248 | NN | denotes | expression |
T193 | 234-237 | CC | denotes | and |
T192 | 228-233 | NN | denotes | NF-κB |
T191 | 225-227 | IN | denotes | of |
T190 | 216-224 | NN | denotes | activity |
T189 | 212-215 | DT | denotes | The |
T188 | 206-210 | NN | denotes | MMP9 |
T187 | 203-205 | IN | denotes | of |
T186 | 194-202 | NN | denotes | activity |
T185 | 190-193 | DT | denotes | the |
T184 | 183-189 | VB | denotes | detect |
R102 | T155 | T153 | arg1Of | activity,the |
R103 | T155 | T154 | arg1Of | activity,DNA-binding |
R104 | T155 | T156 | arg1Of | activity,of |
R105 | T155 | T158 | arg1Of | activity,was |
R106 | T155 | T159 | arg2Of | activity,evaluated |
R107 | T157 | T156 | arg2Of | NF-κB,of |
R108 | T159 | T152 | arg1Of | evaluated,Then |
R109 | T159 | T158 | arg2Of | evaluated,was |
R110 | T161 | T159 | arg1Of | EMSA,evaluated |
R111 | T161 | T160 | arg2Of | EMSA,by |
R112 | T163 | T164 | arg1Of | mRNA,and |
R113 | T165 | T164 | arg2Of | protein,and |
R114 | T166 | T162 | arg1Of | levels,The |
R115 | T166 | T163 | arg1Of | levels,mRNA |
R116 | T166 | T165 | arg1Of | levels,protein |
R117 | T166 | T167 | arg1Of | levels,of |
R118 | T166 | T176 | arg1Of | levels,were |
R119 | T166 | T178 | arg2Of | levels,evaluated |
R120 | T168 | T169 | arg1Of | TNF-α,"," |
R121 | T169 | T171 | arg1Of | ",","," |
R122 | T170 | T169 | arg2Of | IL-1β,"," |
R123 | T171 | T174 | arg1Of | ",",and |
R124 | T172 | T171 | arg2Of | IL-6,"," |
R125 | T174 | T167 | arg2Of | and,of |
R126 | T174 | T173 | arg1Of | and,"," |
R127 | T175 | T174 | arg2Of | MMP9,and |
R128 | T178 | T176 | arg2Of | evaluated,were |
R129 | T178 | T177 | arg1Of | evaluated,also |
R130 | T180 | T179 | arg1Of | zymography,Gelatin |
R131 | T180 | T181 | arg1Of | zymography,was |
R132 | T180 | T182 | arg2Of | zymography,performed |
R133 | T182 | T181 | arg2Of | performed,was |
R134 | T184 | T182 | arg3Of | detect,performed |
R135 | T184 | T183 | arg1Of | detect,to |
R136 | T186 | T184 | arg2Of | activity,detect |
R137 | T186 | T185 | arg1Of | activity,the |
R138 | T186 | T187 | arg1Of | activity,of |
R139 | T188 | T187 | arg2Of | MMP9,of |
R140 | T190 | T189 | arg1Of | activity,The |
R141 | T190 | T191 | arg1Of | activity,of |
R142 | T190 | T200 | arg1Of | activity,were |
R144 | T192 | T193 | arg1Of | NF-κB,and |
R145 | T193 | T191 | arg2Of | and,of |
R146 | T193 | T195 | arg1Of | and,of |
R147 | T194 | T193 | arg2Of | expression,and |
R148 | T197 | T195 | arg2Of | cytokines,of |
R149 | T197 | T196 | arg1Of | cytokines,proinflammatory |
R150 | T197 | T198 | arg2Of | cytokines,mentioned |
R151 | T198 | T199 | arg1Of | mentioned,above |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T43 | 104-109 | Protein | denotes | IL-1β |
T44 | 111-115 | Protein | denotes | IL-6 |
T45 | 121-125 | Protein | denotes | MMP9 |
T46 | 206-210 | Protein | denotes | MMP9 |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T265 | 97-102 | http://www.uniprot.org/uniprot/P01375 | denotes | TNF-α |
T266 | 104-109 | http://www.uniprot.org/uniprot/P01584 | denotes | IL-1β |
T267 | 111-115 | http://www.uniprot.org/uniprot/P05231 | denotes | IL-6 |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T257 | 13-24 | http://purl.obolibrary.org/obo/GO_0003677 | denotes | DNA-binding |
T258 | 17-24 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
T259 | 111-115 | http://purl.obolibrary.org/obo/GO_0005138 | denotes | IL-6 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T30 | 147-211 | Sentence | denotes | Gelatin zymography was performed to detect the activity of MMP9. |
T29 | 66-146 | Sentence | denotes | The mRNA and protein levels of TNF-α, IL-1β, IL-6, and MMP9 were also evaluated. |
T28 | 4-65 | Sentence | denotes | Then the DNA-binding activity of NF-κB was evaluated by EMSA. |
T6 | 4-65 | Sentence | denotes | Then the DNA-binding activity of NF-κB was evaluated by EMSA. |
T7 | 66-146 | Sentence | denotes | The mRNA and protein levels of TNF-α, IL-1β, IL-6, and MMP9 were also evaluated. |
T8 | 147-211 | Sentence | denotes | Gelatin zymography was performed to detect the activity of MMP9. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T263 | 206-210 | Protein | denotes | MMP9 |
T260 | 104-109 | Protein | denotes | IL-1β |
T261 | 111-115 | Protein | denotes | IL-6 |
T262 | 121-125 | Protein | denotes | MMP9 |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T555 | 104-109 | Protein | denotes | IL-1β |
T556 | 111-115 | Protein | denotes | IL-6 |
T557 | 121-125 | Protein | denotes | MMP9 |
T558 | 206-210 | Protein | denotes | MMP9 |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T268 | 104-109 | Protein | denotes | IL-1β |
T269 | 111-115 | Protein | denotes | IL-6 |
T270 | 121-125 | Protein | denotes | MMP9 |
T271 | 206-210 | Protein | denotes | MMP9 |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T274 | 104-109 | Protein | denotes | IL-1β |
T275 | 111-115 | Protein | denotes | IL-6 |
T276 | 121-125 | Protein | denotes | MMP9 |
T277 | 206-210 | Protein | denotes | MMP9 |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T592 | 238-287 | Gene_expression | denotes | expression of proinflammatory cytokines mentioned |
T584 | 147-165 | Entity | denotes | Gelatin zymography |
T563 | 203-210 | Protein | denotes | of MMP9 |
T564 | 34-42 | Protein | denotes | of NF-κB |
T566 | 111-115 | Protein | denotes | IL-6 |
T568 | 228-233 | Protein | denotes | NF-κB |
T573 | 121-125 | Protein | denotes | MMP9 |
T576 | 104-116 | Protein | denotes | IL-1β, IL-6, |
T578 | 70-74 | Protein | denotes | mRNA |
T581 | 97-102 | Protein | denotes | TNF-α |
T582 | 79-86 | Protein | denotes | protein |
T583 | 249-277 | Protein | denotes | of proinflammatory cytokines |
R450 | T583 | T592 | themeOf | of proinflammatory cytokines,expression of proinflammatory cytokines mentioned |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T468 | 294-298 | VBD | denotes | were |
T467 | 288-293 | IN | denotes | above |
T466 | 278-287 | VBN | denotes | mentioned |
T465 | 268-277 | NNS | denotes | cytokines |
T464 | 252-267 | JJ | denotes | proinflammatory |
T463 | 249-251 | IN | denotes | of |
T462 | 238-248 | NN | denotes | expression |
T461 | 234-237 | CC | denotes | and |
T460 | 228-233 | NNP | denotes | NF-κB |
T459 | 225-227 | IN | denotes | of |
T458 | 216-224 | NN | denotes | activity |
T457 | 212-215 | DT | denotes | The |
T456 | 210-211 | . | denotes | . |
T455 | 206-210 | NNP | denotes | MMP9 |
T454 | 203-205 | IN | denotes | of |
T453 | 194-202 | NN | denotes | activity |
T452 | 190-193 | DT | denotes | the |
T451 | 183-189 | VB | denotes | detect |
T450 | 180-182 | TO | denotes | to |
T449 | 170-179 | VBN | denotes | performed |
T448 | 166-169 | VBD | denotes | was |
T447 | 155-165 | NN | denotes | zymography |
T446 | 147-154 | NN | denotes | Gelatin |
T445 | 145-146 | . | denotes | . |
T444 | 136-145 | VBN | denotes | evaluated |
T443 | 131-135 | RB | denotes | also |
T442 | 126-130 | VBD | denotes | were |
T441 | 121-125 | NNP | denotes | MMP9 |
T440 | 117-120 | CC | denotes | and |
T439 | 115-116 | , | denotes | , |
T438 | 111-115 | NNP | denotes | IL-6 |
T437 | 109-110 | , | denotes | , |
T436 | 104-109 | NNP | denotes | IL-1β |
T435 | 102-103 | , | denotes | , |
T434 | 97-102 | NNP | denotes | TNF-α |
T433 | 94-96 | IN | denotes | of |
T432 | 87-93 | NNS | denotes | levels |
T431 | 79-86 | NN | denotes | protein |
T430 | 75-78 | CC | denotes | and |
T429 | 70-74 | NNP | denotes | mRNA |
T428 | 66-69 | DT | denotes | The |
T427 | 64-65 | . | denotes | . |
T426 | 60-64 | NNP | denotes | EMSA |
T425 | 57-59 | IN | denotes | by |
T424 | 47-56 | VBN | denotes | evaluated |
T423 | 43-46 | VBD | denotes | was |
T422 | 37-42 | NN | denotes | NF-κB |
T421 | 34-36 | IN | denotes | of |
T420 | 25-33 | NN | denotes | activity |
T419 | 13-24 | JJ | denotes | DNA-binding |
T418 | 9-12 | DT | denotes | the |
T417 | 4-8 | RB | denotes | Then |
T416 | 2-3 | . | denotes | . |
R319 | T417 | T424 | advmod | Then,evaluated |
R320 | T418 | T420 | det | the,activity |
R321 | T419 | T420 | amod | DNA-binding,activity |
R322 | T420 | T424 | nsubjpass | activity,evaluated |
R323 | T421 | T420 | prep | of,activity |
R324 | T422 | T421 | pobj | NF-κB,of |
R325 | T423 | T424 | auxpass | was,evaluated |
R326 | T424 | T424 | ROOT | evaluated,evaluated |
R327 | T425 | T424 | agent | by,evaluated |
R328 | T426 | T425 | pobj | EMSA,by |
R329 | T427 | T424 | punct | .,evaluated |
R330 | T428 | T429 | det | The,mRNA |
R331 | T429 | T444 | nsubjpass | mRNA,evaluated |
R332 | T430 | T429 | cc | and,mRNA |
R333 | T431 | T432 | compound | protein,levels |
R334 | T432 | T429 | conj | levels,mRNA |
R335 | T433 | T432 | prep | of,levels |
R349 | T447 | T449 | nsubjpass | zymography,performed |
R350 | T448 | T449 | auxpass | was,performed |
R351 | T449 | T449 | ROOT | performed,performed |
R352 | T450 | T451 | aux | to,detect |
R353 | T451 | T449 | advcl | detect,performed |
R354 | T452 | T453 | det | the,activity |
R355 | T453 | T451 | dobj | activity,detect |
R356 | T454 | T453 | prep | of,activity |
R357 | T455 | T454 | pobj | MMP9,of |
R358 | T456 | T449 | punct | .,performed |
R359 | T457 | T458 | det | The,activity |
R361 | T459 | T458 | prep | of,activity |
R362 | T460 | T459 | pobj | NF-κB,of |
R363 | T461 | T458 | cc | and,activity |
R364 | T462 | T458 | conj | expression,activity |
R365 | T463 | T462 | prep | of,expression |
R366 | T464 | T465 | amod | proinflammatory,cytokines |
R367 | T465 | T463 | pobj | cytokines,of |
R368 | T466 | T465 | acl | mentioned,cytokines |
R369 | T467 | T466 | advmod | above,mentioned |
R336 | T434 | T433 | pobj | TNF-α,of |
R337 | T435 | T434 | punct | ",",TNF-α |
R338 | T436 | T434 | conj | IL-1β,TNF-α |
R339 | T437 | T436 | punct | ",",IL-1β |
R340 | T438 | T436 | conj | IL-6,IL-1β |
R341 | T439 | T438 | punct | ",",IL-6 |
R342 | T440 | T438 | cc | and,IL-6 |
R343 | T441 | T438 | conj | MMP9,IL-6 |
R344 | T442 | T444 | auxpass | were,evaluated |
R345 | T443 | T444 | advmod | also,evaluated |
R346 | T444 | T444 | ROOT | evaluated,evaluated |
R347 | T445 | T444 | punct | .,evaluated |
R348 | T446 | T447 | compound | Gelatin,zymography |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T305 | 228-233 | Protein | denotes | NF-κB |
T304 | 206-210 | Protein | denotes | MMP9 |
T303 | 121-125 | Protein | denotes | MMP9 |
T302 | 111-115 | Protein | denotes | IL-6 |
T301 | 104-109 | Protein | denotes | IL-1β |
T300 | 97-102 | Protein | denotes | TNF-α |
T299 | 37-42 | Protein | denotes | NF-κB |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9 | 206-210 | Protein | denotes | MMP9 |
T8 | 121-125 | Protein | denotes | MMP9 |
T7 | 111-115 | Protein | denotes | IL-6 |
T6 | 104-109 | Protein | denotes | IL-1β |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 206-210 | Protein | denotes | MMP9 |
T19 | 121-125 | Protein | denotes | MMP9 |
T18 | 111-115 | Protein | denotes | IL-6 |
T17 | 104-109 | Protein | denotes | IL-1β |
T15 | 206-210 | Protein | denotes | MMP9 |
T14 | 121-125 | Protein | denotes | MMP9 |
T13 | 111-115 | Protein | denotes | IL-6 |
T12 | 104-109 | Protein | denotes | IL-1β |