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PMC:3317373 / 5887-6060 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2439 164-172 NN denotes fluoride
T2438 143-163 NN denotes phenylmethylsulfonyl
T2437 140-142 NN denotes mM
T2436 136-139 CD denotes 1.0
T2435 132-135 CC denotes and
T2434 130-131 -COMMA- denotes ,
T2433 127-130 NN denotes DTT
T2432 124-126 NN denotes mM
T2431 120-123 CD denotes 1.0
T2430 118-119 -COMMA- denotes ,
T2429 114-118 NN denotes EGTA
T2428 111-113 NN denotes mM
T2427 107-110 CD denotes 1.0
T2426 105-106 -COMMA- denotes ,
T2425 101-105 NN denotes EDTA
T2424 98-100 NN denotes mM
T2423 94-97 CD denotes 1.0
T2422 92-93 -COMMA- denotes ,
T2421 88-92 NN denotes NaCl
T2420 85-87 NN denotes mM
T2419 81-84 CD denotes 0.4
T2418 79-80 -COMMA- denotes ,
T2417 78-79 -RRB- denotes )
T2416 75-78 CD denotes 7.9
T2415 72-74 NN denotes pH
T2414 71-72 -LRB- denotes (
T2413 65-70 NN denotes HEPES
T2412 62-64 NN denotes mM
T2411 59-61 CD denotes 20
T2410 48-58 VB denotes containing
T2409 41-47 NN denotes buffer
T2408 36-40 IN denotes with
T2407 26-35 VB denotes extracted
T2406 21-25 VB denotes were
T2405 12-20 NN denotes proteins
T2404 4-11 JJ denotes nuclear
T2403 0-3 DT denotes The
R2049 T2405 T2403 arg1Of proteins,The
R2050 T2405 T2404 arg1Of proteins,nuclear
R2051 T2405 T2406 arg1Of proteins,were
R2052 T2405 T2407 arg2Of proteins,extracted
R2053 T2407 T2406 arg2Of extracted,were
R2054 T2407 T2408 arg1Of extracted,with
R2055 T2409 T2410 arg1Of buffer,containing
R2056 T2409 T2422 arg1Of buffer,","
R2057 T2411 T2412 arg1Of 20,mM
R2058 T2413 T2411 arg1Of HEPES,20
R2059 T2413 T2414 arg1Of HEPES,(
R2060 T2413 T2418 arg1Of HEPES,","
R2061 T2415 T2414 arg2Of pH,(
R2062 T2415 T2416 arg1Of pH,7.9
R2063 T2417 T2414 arg3Of ),(
R2064 T2418 T2410 arg2Of ",",containing
R2065 T2419 T2420 arg1Of 0.4,mM
R2066 T2421 T2418 arg2Of NaCl,","
R2067 T2421 T2419 arg1Of NaCl,0.4
R2068 T2422 T2408 arg2Of ",",with
R2069 T2423 T2424 arg1Of 1.0,mM
R2070 T2425 T2423 arg1Of EDTA,1.0
R2071 T2425 T2426 arg1Of EDTA,","
R2072 T2426 T2430 arg1Of ",",","
R2073 T2427 T2428 arg1Of 1.0,mM
R2074 T2429 T2426 arg2Of EGTA,","
R2075 T2429 T2427 arg1Of EGTA,1.0
R2076 T2430 T2435 arg1Of ",",and
R2077 T2431 T2432 arg1Of 1.0,mM
R2078 T2433 T2430 arg2Of DTT,","
R2079 T2433 T2431 arg1Of DTT,1.0
R2080 T2435 T2422 arg2Of and,","
R2081 T2435 T2434 arg1Of and,","
R2082 T2436 T2437 arg1Of 1.0,mM
R2083 T2439 T2435 arg2Of fluoride,and
R2084 T2439 T2436 arg1Of fluoride,1.0
R2085 T2439 T2438 arg1Of fluoride,phenylmethylsulfonyl

sentences

Id Subject Object Predicate Lexical cue
T2314 0-173 Sentence denotes The nuclear proteins were extracted with buffer containing 20 mM HEPES (pH 7.9), 0.4 mM NaCl, 1.0 mM EDTA, 1.0 mM EGTA, 1.0 mM DTT, and 1.0 mM phenylmethylsulfonyl fluoride.
T64 0-173 Sentence denotes The nuclear proteins were extracted with buffer containing 20 mM HEPES (pH 7.9), 0.4 mM NaCl, 1.0 mM EDTA, 1.0 mM EGTA, 1.0 mM DTT, and 1.0 mM phenylmethylsulfonyl fluoride.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3095 0-70 Negative_regulation denotes The nuclear proteins were extracted with buffer containing 20 mM HEPES
T3075 107-131 Entity denotes 1.0 mM EGTA, 1.0 mM DTT,
T3059 0-20 Protein denotes The nuclear proteins
T3042 94-105 Entity denotes 1.0 mM EDTA
T3041 120-130 Entity denotes 1.0 mM DTT
T3040 59-70 Entity denotes 20 mM HEPES
T3070 136-172 Entity denotes 1.0 mM phenylmethylsulfonyl fluoride
T3068 72-74 Protein denotes pH
T3063 81-106 Entity denotes 0.4 mM NaCl, 1.0 mM EDTA,
R2676 T3059 T3095 themeOf The nuclear proteins,The nuclear proteins were extracted with buffer containing 20 mM HEPES

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2772 78-79 -RRB- denotes )
T2771 75-78 CD denotes 7.9
T2770 72-74 NNP denotes pH
T2769 71-72 -LRB- denotes (
T2768 65-70 NNP denotes HEPES
T2767 62-64 NNP denotes mM
T2766 59-61 CD denotes 20
T2765 48-58 VBG denotes containing
T2764 41-47 NN denotes buffer
T2763 36-40 IN denotes with
T2762 26-35 VBN denotes extracted
T2761 21-25 VBD denotes were
T2760 12-20 NNS denotes proteins
T2759 4-11 JJ denotes nuclear
T2758 0-3 DT denotes The
T2795 172-173 . denotes .
T2794 164-172 NN denotes fluoride
T2793 143-163 NN denotes phenylmethylsulfonyl
T2792 140-142 NNP denotes mM
T2791 136-139 CD denotes 1.0
T2790 132-135 CC denotes and
T2789 130-131 , denotes ,
T2788 127-130 NNP denotes DTT
T2787 124-126 NNP denotes mM
T2786 120-123 CD denotes 1.0
T2785 118-119 , denotes ,
T2784 114-118 NNP denotes EGTA
T2783 111-113 NNP denotes mM
T2782 107-110 CD denotes 1.0
T2781 105-106 , denotes ,
T2780 101-105 NNP denotes EDTA
T2779 98-100 NNP denotes mM
T2778 94-97 CD denotes 1.0
T2777 92-93 , denotes ,
T2776 88-92 NNP denotes NaCl
T2775 85-87 NNP denotes mM
T2774 81-84 CD denotes 0.4
T2773 79-80 , denotes ,
R2397 T2758 T2760 det The,proteins
R2398 T2759 T2760 amod nuclear,proteins
R2399 T2760 T2762 nsubjpass proteins,extracted
R2400 T2761 T2762 auxpass were,extracted
R2401 T2762 T2762 ROOT extracted,extracted
R2402 T2763 T2762 prep with,extracted
R2403 T2764 T2763 pobj buffer,with
R2404 T2765 T2764 acl containing,buffer
R2405 T2766 T2768 nummod 20,HEPES
R2406 T2767 T2768 compound mM,HEPES
R2407 T2768 T2765 dobj HEPES,containing
R2408 T2769 T2770 punct (,pH
R2409 T2770 T2768 appos pH,HEPES
R2410 T2771 T2770 nummod 7.9,pH
R2411 T2772 T2770 punct ),pH
R2412 T2773 T2768 punct ",",HEPES
R2413 T2774 T2776 nummod 0.4,NaCl
R2414 T2775 T2776 compound mM,NaCl
R2415 T2776 T2768 appos NaCl,HEPES
R2416 T2777 T2776 punct ",",NaCl
R2417 T2778 T2780 nummod 1.0,EDTA
R2418 T2779 T2780 compound mM,EDTA
R2419 T2780 T2776 conj EDTA,NaCl
R2420 T2781 T2780 punct ",",EDTA
R2421 T2782 T2784 nummod 1.0,EGTA
R2422 T2783 T2784 compound mM,EGTA
R2423 T2784 T2780 conj EGTA,EDTA
R2424 T2785 T2784 punct ",",EGTA
R2425 T2786 T2788 nummod 1.0,DTT
R2426 T2787 T2788 compound mM,DTT
R2427 T2788 T2784 conj DTT,EGTA
R2428 T2789 T2788 punct ",",DTT
R2429 T2790 T2788 cc and,DTT
R2430 T2791 T2794 nummod 1.0,fluoride
R2431 T2792 T2794 compound mM,fluoride
R2432 T2793 T2794 compound phenylmethylsulfonyl,fluoride
R2433 T2794 T2788 conj fluoride,DTT
R2434 T2795 T2762 punct .,extracted