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PMC:3317373 / 4366-4839 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22529521-8455207-67992085 64-65 8455207 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1878 269-276 NN denotes scratch
T1916 467-472 NN denotes group
T1915 462-466 NN denotes sham
T1914 459-461 IN denotes as
T1913 453-458 VB denotes named
T1912 449-452 CC denotes and
T1911 441-448 NN denotes control
T1910 435-440 JJ denotes blank
T1909 432-434 IN denotes as
T1908 427-431 VB denotes used
T1907 422-426 VB denotes were
T1906 420-421 -COMMA- denotes ,
T1905 413-420 NN denotes scratch
T1904 404-412 VB denotes received
T1903 400-403 RB denotes not
T1902 396-399 VB denotes did
T1901 390-395 WDT denotes which
T1900 388-389 -COMMA- denotes ,
T1899 383-388 NN denotes Cells
T1898 376-381 NN denotes group
T1897 372-375 NN denotes TBI
T1896 369-371 IN denotes as
T1895 363-368 VB denotes named
T1894 359-362 CC denotes and
T1893 357-358 -COMMA- denotes ,
T1892 351-357 NN denotes medium
T1891 343-350 NN denotes culture
T1890 334-342 JJ denotes complete
T1889 329-333 IN denotes with
T1888 320-328 VB denotes cultured
T1887 318-319 -COMMA- denotes ,
T1886 315-318 NNP denotes PBS
T1885 307-314 JJ denotes sterile
T1884 302-306 IN denotes with
T1883 296-301 RB denotes twice
T1882 289-295 VB denotes washed
T1881 284-288 VB denotes were
T1880 278-283 NN denotes cells
T1879 276-277 -COMMA- denotes ,
T1877 263-268 IN denotes after
T1876 251-262 RB denotes Immediately
T1875 246-249 NN denotes gap
T1874 241-245 JJ denotes wide
T1873 238-240 NN denotes mm
T1872 234-237 CD denotes 0.5
T1871 232-233 DT denotes a
T1870 229-231 IN denotes of
T1869 219-228 NN denotes formation
T1868 215-218 DT denotes the
T1867 212-214 IN denotes in
T1866 202-211 VB denotes resulting
T1865 200-201 -COMMA- denotes ,
T1864 194-200 NN denotes needle
T1863 186-193 NN denotes syringe
T1862 182-185 NN denotes 26G
T1861 174-181 JJ denotes sterile
T1860 172-173 DT denotes a
T1859 167-171 IN denotes with
T1858 157-166 VB denotes scratched
T1857 153-156 VB denotes was
T1856 143-152 NN denotes monolayer
T1855 138-142 NN denotes cell
T1854 134-137 DT denotes The
T1853 122-132 VB denotes confluence
T1852 119-121 TO denotes to
T1851 113-118 VB denotes grown
T1850 109-112 CC denotes and
T1849 102-108 NN denotes plates
T1848 95-101 JJ denotes 6-well
T1847 92-94 IN denotes in
T1846 84-91 VB denotes planted
T1845 79-83 VB denotes were
T1844 68-78 NN denotes Astrocytes
T1843 65-66 -RRB- denotes ]
T1842 64-65 CD denotes 7
T1841 63-64 -LRB- denotes [
T1840 56-62 NN denotes report
T1839 47-55 JJ denotes previous
T1838 45-46 DT denotes a
T1837 42-44 IN denotes in
T1836 39-41 IN denotes as
T1835 29-38 VB denotes performed
T1834 25-28 VB denotes was
T1833 18-24 NN denotes injury
T1832 10-17 NN denotes scratch
T1831 0-9 NN denotes Astrocyte
R1534 T1833 T1831 arg1Of injury,Astrocyte
R1535 T1833 T1832 arg1Of injury,scratch
R1536 T1833 T1834 arg1Of injury,was
R1537 T1833 T1835 arg2Of injury,performed
R1538 T1835 T1834 arg2Of performed,was
R1539 T1835 T1837 arg1Of performed,in
R1540 T1835 T1841 arg1Of performed,[
R1541 T1837 T1836 arg1Of in,as
R1542 T1840 T1837 arg2Of report,in
R1543 T1840 T1838 arg1Of report,a
R1544 T1840 T1839 arg1Of report,previous
R1545 T1842 T1841 arg2Of 7,[
R1546 T1843 T1841 arg3Of ],[
R1547 T1844 T1845 arg1Of Astrocytes,were
R1548 T1844 T1846 arg2Of Astrocytes,planted
R1549 T1844 T1851 arg2Of Astrocytes,grown
R1550 T1846 T1847 arg1Of planted,in
R1551 T1846 T1850 arg1Of planted,and
R1552 T1849 T1847 arg2Of plates,in
R1553 T1849 T1848 arg1Of plates,6-well
R1554 T1850 T1845 arg2Of and,were
R1555 T1850 T1852 modOf and,to
R1556 T1851 T1850 arg2Of grown,and
R1557 T1853 T1852 arg1Of confluence,to
R1558 T1856 T1854 arg1Of monolayer,The
R1559 T1856 T1855 arg1Of monolayer,cell
R1560 T1856 T1857 arg1Of monolayer,was
R1561 T1856 T1858 arg2Of monolayer,scratched
R1562 T1858 T1857 arg2Of scratched,was
R1563 T1858 T1859 arg1Of scratched,with
R1564 T1858 T1865 arg1Of scratched,","
R1565 T1858 T1866 modOf scratched,resulting
R1566 T1864 T1859 arg2Of needle,with
R1567 T1864 T1860 arg1Of needle,a
R1568 T1864 T1861 arg1Of needle,sterile
R1569 T1864 T1862 arg1Of needle,26G
R1570 T1864 T1863 arg1Of needle,syringe
R1571 T1866 T1867 arg1Of resulting,in
R1572 T1869 T1867 arg2Of formation,in
R1573 T1869 T1868 arg1Of formation,the
R1574 T1869 T1870 arg1Of formation,of
R1575 T1875 T1870 arg2Of gap,of
R1576 T1875 T1871 arg1Of gap,a
R1577 T1875 T1872 arg1Of gap,0.5
R1578 T1875 T1873 arg1Of gap,mm
R1579 T1875 T1874 arg1Of gap,wide
R1580 T1877 T1876 arg1Of after,Immediately
R1581 T1878 T1877 arg2Of scratch,after
R1582 T1880 T1881 arg1Of cells,were
R1583 T1880 T1882 arg2Of cells,washed
R1584 T1880 T1895 arg2Of cells,named
R1585 T1882 T1883 arg1Of washed,twice
R1586 T1882 T1884 arg1Of washed,with
R1587 T1882 T1894 arg1Of washed,and
R1588 T1886 T1884 arg2Of PBS,with
R1589 T1886 T1885 arg1Of PBS,sterile
R1590 T1886 T1887 arg1Of PBS,","
R1591 T1886 T1888 arg2Of PBS,cultured
R1592 T1888 T1889 arg1Of cultured,with
R1593 T1892 T1889 arg2Of medium,with
R1594 T1892 T1890 arg1Of medium,complete
R1595 T1892 T1891 arg1Of medium,culture
R1596 T1894 T1877 arg1Of and,after
R1597 T1894 T1879 arg1Of and,","
R1598 T1894 T1881 arg2Of and,were
R1599 T1894 T1893 arg1Of and,","
R1600 T1895 T1894 arg2Of named,and
R1601 T1895 T1896 arg1Of named,as
R1602 T1898 T1896 arg2Of group,as
R1603 T1898 T1897 arg1Of group,TBI
R1604 T1899 T1900 arg1Of Cells,","
R1605 T1899 T1901 arg1Of Cells,which
R1606 T1899 T1902 arg1Of Cells,did
R1607 T1899 T1907 arg1Of Cells,were
R1608 T1899 T1908 arg2Of Cells,used
R1609 T1899 T1913 arg2Of Cells,named
R1610 T1902 T1903 arg1Of did,not
R1611 T1905 T1902 arg2Of scratch,did
R1612 T1905 T1904 arg2Of scratch,received
R1613 T1908 T1909 arg1Of used,as
R1614 T1908 T1912 arg1Of used,and
R1615 T1911 T1909 arg2Of control,as
R1616 T1911 T1910 arg1Of control,blank
R1617 T1912 T1906 arg1Of and,","
R1618 T1912 T1907 arg2Of and,were
R1619 T1913 T1912 arg2Of named,and
R1620 T1913 T1914 arg1Of named,as
R1621 T1916 T1914 arg2Of group,as
R1622 T1916 T1915 arg1Of group,sham

GO-BP

Id Subject Object Predicate Lexical cue
T1820 219-228 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

GO-CC

Id Subject Object Predicate Lexical cue
T1920 278-283 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1919 138-142 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1819 383-473 Sentence denotes Cells, which did not received scratch, were used as blank control and named as sham group.
T1818 251-382 Sentence denotes Immediately after scratch, cells were washed twice with sterile PBS, cultured with complete culture medium, and named as TBI group.
T1817 134-250 Sentence denotes The cell monolayer was scratched with a sterile 26G syringe needle, resulting in the formation of a 0.5 mm wide gap.
T1816 68-133 Sentence denotes Astrocytes were planted in 6-well plates and grown to confluence.
T1815 0-67 Sentence denotes Astrocyte scratch injury was performed as in a previous report [7].
T45 0-67 Sentence denotes Astrocyte scratch injury was performed as in a previous report [7].
T46 68-133 Sentence denotes Astrocytes were planted in 6-well plates and grown to confluence.
T47 134-250 Sentence denotes The cell monolayer was scratched with a sterile 26G syringe needle, resulting in the formation of a 0.5 mm wide gap.
T48 251-382 Sentence denotes Immediately after scratch, cells were washed twice with sterile PBS, cultured with complete culture medium, and named as TBI group.
T49 383-473 Sentence denotes Cells, which did not received scratch, were used as blank control and named as sham group.

ICD10

Id Subject Object Predicate Lexical cue
T1918 18-24 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2031 307-357 Regulation denotes sterile PBS, cultured with complete culture medium
T2030 278-283 Entity denotes cells
T2029 134-142 Entity denotes The cell
T2028 0-66 Entity denotes Astrocyte scratch injury was performed as in a previous report [7]
T2027 68-78 Entity denotes Astrocytes
T2026 307-357 Protein denotes sterile PBS, cultured with complete culture medium
T2025 383-403 Entity denotes Cells, which did not
T2024 462-466 Entity denotes sham
T2023 174-181 Protein denotes sterile
R1725 T2026 T2031 themeOf "sterile PBS, cultured with complete culture medium","sterile PBS, cultured with complete culture medium"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2022 472-473 . denotes .
T2021 467-472 NN denotes group
T2020 462-466 NN denotes sham
T2019 459-461 IN denotes as
T2018 453-458 VBN denotes named
T2017 449-452 CC denotes and
T2016 441-448 NN denotes control
T2015 435-440 JJ denotes blank
T2014 432-434 IN denotes as
T2013 427-431 VBN denotes used
T2012 422-426 VBD denotes were
T2011 420-421 , denotes ,
T2010 413-420 NN denotes scratch
T2009 404-412 VBN denotes received
T2008 400-403 RB denotes not
T2007 396-399 VBD denotes did
T2006 390-395 WDT denotes which
T2005 388-389 , denotes ,
T2004 383-388 NNS denotes Cells
T2003 381-382 . denotes .
T2002 376-381 NN denotes group
T2001 372-375 NNP denotes TBI
T2000 369-371 IN denotes as
T1999 363-368 VBN denotes named
T1998 359-362 CC denotes and
T1997 357-358 , denotes ,
T1996 351-357 NN denotes medium
T1995 343-350 NN denotes culture
T1994 334-342 JJ denotes complete
T1993 329-333 IN denotes with
T1992 320-328 VBN denotes cultured
T1991 318-319 , denotes ,
T1990 315-318 NNP denotes PBS
T1989 307-314 JJ denotes sterile
T1988 302-306 IN denotes with
T1987 296-301 RB denotes twice
T1986 289-295 VBN denotes washed
T1985 284-288 VBD denotes were
T1984 278-283 NNS denotes cells
T1983 276-277 , denotes ,
T1982 269-276 NN denotes scratch
T1981 263-268 IN denotes after
T1980 251-262 RB denotes Immediately
T1979 249-250 . denotes .
T1978 246-249 NN denotes gap
T1977 241-245 JJ denotes wide
T1976 238-240 NN denotes mm
T1975 234-237 CD denotes 0.5
T1974 232-233 DT denotes a
T1973 229-231 IN denotes of
T1972 219-228 NN denotes formation
T1971 215-218 DT denotes the
T1970 212-214 IN denotes in
T1969 202-211 VBG denotes resulting
T1968 200-201 , denotes ,
T1967 194-200 NN denotes needle
T1966 186-193 NN denotes syringe
T1965 182-185 JJ denotes 26G
T1964 174-181 JJ denotes sterile
T1963 172-173 DT denotes a
T1962 167-171 IN denotes with
T1961 157-166 VBN denotes scratched
T1960 153-156 VBD denotes was
T1959 143-152 NN denotes monolayer
T1958 138-142 NN denotes cell
T1957 134-137 DT denotes The
T1956 132-133 . denotes .
T1955 122-132 NN denotes confluence
T1954 119-121 TO denotes to
T1953 113-118 VBN denotes grown
T1952 109-112 CC denotes and
T1951 102-108 NNS denotes plates
T1950 95-101 JJ denotes 6-well
T1949 92-94 IN denotes in
T1948 84-91 VBN denotes planted
T1947 79-83 VBD denotes were
T1946 68-78 NNS denotes Astrocytes
T1945 66-67 . denotes .
T1944 65-66 NNP denotes ]
T1943 64-65 CD denotes 7
T1942 63-64 NN denotes [
T1941 56-62 NN denotes report
T1940 47-55 JJ denotes previous
T1939 45-46 DT denotes a
T1938 42-44 IN denotes in
T1937 39-41 IN denotes as
T1936 29-38 VBN denotes performed
T1935 25-28 VBD denotes was
T1934 18-24 NN denotes injury
T1933 10-17 NN denotes scratch
T1932 0-9 NNP denotes Astrocyte
R1634 T1932 T1934 compound Astrocyte,injury
R1635 T1933 T1934 compound scratch,injury
R1637 T1935 T1936 auxpass was,performed
R1638 T1936 T1936 ROOT performed,performed
R1639 T1937 T1936 prep as,performed
R1640 T1938 T1937 prep in,as
R1641 T1939 T1941 det a,report
R1642 T1940 T1941 amod previous,report
R1643 T1941 T1938 pobj report,in
R1644 T1942 T1937 pobj [,as
R1645 T1943 T1942 nummod 7,[
R1646 T1944 T1942 conj ],[
R1647 T1945 T1936 punct .,performed
R1648 T1946 T1948 nsubjpass Astrocytes,planted
R1649 T1947 T1948 auxpass were,planted
R1650 T1948 T1948 ROOT planted,planted
R1651 T1949 T1948 prep in,planted
R1652 T1950 T1951 amod 6-well,plates
R1653 T1951 T1949 pobj plates,in
R1654 T1952 T1948 cc and,planted
R1655 T1953 T1948 conj grown,planted
R1656 T1954 T1953 prep to,grown
R1657 T1955 T1954 pobj confluence,to
R1658 T1956 T1948 punct .,planted
R1659 T1957 T1959 det The,monolayer
R1660 T1958 T1959 compound cell,monolayer
R1661 T1959 T1961 nsubjpass monolayer,scratched
R1662 T1960 T1961 auxpass was,scratched
R1663 T1961 T1961 ROOT scratched,scratched
R1664 T1962 T1961 prep with,scratched
R1665 T1963 T1967 det a,needle
R1666 T1964 T1967 amod sterile,needle
R1667 T1965 T1967 compound 26G,needle
R1668 T1966 T1967 compound syringe,needle
R1669 T1967 T1962 pobj needle,with
R1670 T1968 T1961 punct ",",scratched
R1671 T1969 T1961 advcl resulting,scratched
R1672 T1970 T1969 prep in,resulting
R1673 T1971 T1972 det the,formation
R1674 T1972 T1970 pobj formation,in
R1675 T1973 T1972 prep of,formation
R1676 T1974 T1978 det a,gap
R1677 T1975 T1976 nummod 0.5,mm
R1678 T1976 T1978 nmod mm,gap
R1679 T1977 T1978 amod wide,gap
R1680 T1978 T1973 pobj gap,of
R1681 T1979 T1961 punct .,scratched
R1682 T1980 T1981 advmod Immediately,after
R1683 T1981 T1986 prep after,washed
R1684 T1982 T1981 pobj scratch,after
R1685 T1983 T1986 punct ",",washed
R1686 T1984 T1986 nsubjpass cells,washed
R1687 T1985 T1986 auxpass were,washed
R1688 T1986 T1986 ROOT washed,washed
R1689 T1987 T1986 advmod twice,washed
R1690 T1988 T1986 prep with,washed
R1691 T1989 T1990 amod sterile,PBS
R1692 T1990 T1988 pobj PBS,with
R1693 T1991 T1986 punct ",",washed
R1694 T1992 T1986 conj cultured,washed
R1695 T1993 T1992 prep with,cultured
R1696 T1994 T1996 amod complete,medium
R1697 T1995 T1996 compound culture,medium
R1698 T1996 T1993 pobj medium,with
R1699 T1997 T1992 punct ",",cultured
R1700 T1998 T1992 cc and,cultured
R1701 T1999 T1992 conj named,cultured
R1702 T2000 T1999 prep as,named
R1703 T2001 T2002 compound TBI,group
R1704 T2002 T2000 pobj group,as
R1705 T2003 T1986 punct .,washed
R1706 T2004 T2013 nsubjpass Cells,used
R1707 T2005 T2004 punct ",",Cells
R1708 T2006 T2009 nsubjpass which,received
R1709 T2007 T2009 aux did,received
R1710 T2008 T2009 neg not,received
R1711 T2009 T2004 relcl received,Cells
R1712 T2010 T2009 dobj scratch,received
R1713 T2011 T2013 punct ",",used
R1714 T2012 T2013 auxpass were,used
R1715 T2013 T2013 ROOT used,used
R1716 T2014 T2013 prep as,used
R1717 T2015 T2016 amod blank,control
R1718 T2016 T2014 pobj control,as
R1719 T2017 T2013 cc and,used
R1720 T2018 T2013 conj named,used
R1721 T2019 T2018 prep as,named
R1722 T2020 T2021 amod sham,group
R1723 T2021 T2019 pobj group,as
R1724 T2022 T2013 punct .,used