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PMC:3317373 / 4309-4839 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22529521-8455207-67992085 121-122 8455207 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1878 326-333 NN denotes scratch
T1916 524-529 NN denotes group
T1915 519-523 NN denotes sham
T1914 516-518 IN denotes as
T1913 510-515 VB denotes named
T1912 506-509 CC denotes and
T1911 498-505 NN denotes control
T1910 492-497 JJ denotes blank
T1909 489-491 IN denotes as
T1908 484-488 VB denotes used
T1907 479-483 VB denotes were
T1906 477-478 -COMMA- denotes ,
T1905 470-477 NN denotes scratch
T1904 461-469 VB denotes received
T1903 457-460 RB denotes not
T1902 453-456 VB denotes did
T1901 447-452 WDT denotes which
T1900 445-446 -COMMA- denotes ,
T1899 440-445 NN denotes Cells
T1898 433-438 NN denotes group
T1897 429-432 NN denotes TBI
T1896 426-428 IN denotes as
T1895 420-425 VB denotes named
T1894 416-419 CC denotes and
T1893 414-415 -COMMA- denotes ,
T1892 408-414 NN denotes medium
T1891 400-407 NN denotes culture
T1890 391-399 JJ denotes complete
T1889 386-390 IN denotes with
T1888 377-385 VB denotes cultured
T1887 375-376 -COMMA- denotes ,
T1886 372-375 NNP denotes PBS
T1885 364-371 JJ denotes sterile
T1884 359-363 IN denotes with
T1883 353-358 RB denotes twice
T1882 346-352 VB denotes washed
T1881 341-345 VB denotes were
T1880 335-340 NN denotes cells
T1879 333-334 -COMMA- denotes ,
T1877 320-325 IN denotes after
T1876 308-319 RB denotes Immediately
T1875 303-306 NN denotes gap
T1874 298-302 JJ denotes wide
T1873 295-297 NN denotes mm
T1872 291-294 CD denotes 0.5
T1871 289-290 DT denotes a
T1870 286-288 IN denotes of
T1869 276-285 NN denotes formation
T1868 272-275 DT denotes the
T1867 269-271 IN denotes in
T1866 259-268 VB denotes resulting
T1865 257-258 -COMMA- denotes ,
T1864 251-257 NN denotes needle
T1863 243-250 NN denotes syringe
T1862 239-242 NN denotes 26G
T1861 231-238 JJ denotes sterile
T1860 229-230 DT denotes a
T1859 224-228 IN denotes with
T1858 214-223 VB denotes scratched
T1857 210-213 VB denotes was
T1856 200-209 NN denotes monolayer
T1855 195-199 NN denotes cell
T1854 191-194 DT denotes The
T1853 179-189 VB denotes confluence
T1852 176-178 TO denotes to
T1851 170-175 VB denotes grown
T1850 166-169 CC denotes and
T1849 159-165 NN denotes plates
T1848 152-158 JJ denotes 6-well
T1847 149-151 IN denotes in
T1846 141-148 VB denotes planted
T1845 136-140 VB denotes were
T1844 125-135 NN denotes Astrocytes
T1843 122-123 -RRB- denotes ]
T1842 121-122 CD denotes 7
T1841 120-121 -LRB- denotes [
T1840 113-119 NN denotes report
T1839 104-112 JJ denotes previous
T1838 102-103 DT denotes a
T1837 99-101 IN denotes in
T1836 96-98 IN denotes as
T1835 86-95 VB denotes performed
T1834 82-85 VB denotes was
T1833 75-81 NN denotes injury
T1832 67-74 NN denotes scratch
T1831 57-66 NN denotes Astrocyte
T1830 50-56 NNP denotes Injury
T1829 42-49 NNP denotes Scratch
T1828 39-41 IN denotes by
T1827 27-38 VB denotes Established
T1826 23-26 NNP denotes TBI
T1825 20-22 IN denotes of
T1824 14-19 NNP denotes Model
T1823 8-13 NNP denotes Vitro
T1822 5-7 IN denotes In
T1821 0-3 CD denotes 2.2
R1526 T1824 T1822 arg2Of Model,In
R1527 T1824 T1823 arg1Of Model,Vitro
R1528 T1824 T1825 arg1Of Model,of
R1529 T1824 T1827 arg2Of Model,Established
R1530 T1826 T1825 arg2Of TBI,of
R1531 T1830 T1827 arg1Of Injury,Established
R1532 T1830 T1828 arg2Of Injury,by
R1533 T1830 T1829 arg1Of Injury,Scratch
R1534 T1833 T1831 arg1Of injury,Astrocyte
R1535 T1833 T1832 arg1Of injury,scratch
R1536 T1833 T1834 arg1Of injury,was
R1537 T1833 T1835 arg2Of injury,performed
R1538 T1835 T1834 arg2Of performed,was
R1539 T1835 T1837 arg1Of performed,in
R1540 T1835 T1841 arg1Of performed,[
R1541 T1837 T1836 arg1Of in,as
R1542 T1840 T1837 arg2Of report,in
R1543 T1840 T1838 arg1Of report,a
R1544 T1840 T1839 arg1Of report,previous
R1545 T1842 T1841 arg2Of 7,[
R1546 T1843 T1841 arg3Of ],[
R1547 T1844 T1845 arg1Of Astrocytes,were
R1548 T1844 T1846 arg2Of Astrocytes,planted
R1549 T1844 T1851 arg2Of Astrocytes,grown
R1550 T1846 T1847 arg1Of planted,in
R1551 T1846 T1850 arg1Of planted,and
R1552 T1849 T1847 arg2Of plates,in
R1553 T1849 T1848 arg1Of plates,6-well
R1554 T1850 T1845 arg2Of and,were
R1555 T1850 T1852 modOf and,to
R1556 T1851 T1850 arg2Of grown,and
R1557 T1853 T1852 arg1Of confluence,to
R1558 T1856 T1854 arg1Of monolayer,The
R1559 T1856 T1855 arg1Of monolayer,cell
R1560 T1856 T1857 arg1Of monolayer,was
R1561 T1856 T1858 arg2Of monolayer,scratched
R1562 T1858 T1857 arg2Of scratched,was
R1563 T1858 T1859 arg1Of scratched,with
R1564 T1858 T1865 arg1Of scratched,","
R1565 T1858 T1866 modOf scratched,resulting
R1566 T1864 T1859 arg2Of needle,with
R1567 T1864 T1860 arg1Of needle,a
R1568 T1864 T1861 arg1Of needle,sterile
R1569 T1864 T1862 arg1Of needle,26G
R1570 T1864 T1863 arg1Of needle,syringe
R1571 T1866 T1867 arg1Of resulting,in
R1572 T1869 T1867 arg2Of formation,in
R1573 T1869 T1868 arg1Of formation,the
R1574 T1869 T1870 arg1Of formation,of
R1575 T1875 T1870 arg2Of gap,of
R1576 T1875 T1871 arg1Of gap,a
R1577 T1875 T1872 arg1Of gap,0.5
R1578 T1875 T1873 arg1Of gap,mm
R1579 T1875 T1874 arg1Of gap,wide
R1580 T1877 T1876 arg1Of after,Immediately
R1581 T1878 T1877 arg2Of scratch,after
R1582 T1880 T1881 arg1Of cells,were
R1583 T1880 T1882 arg2Of cells,washed
R1584 T1880 T1895 arg2Of cells,named
R1585 T1882 T1883 arg1Of washed,twice
R1586 T1882 T1884 arg1Of washed,with
R1587 T1882 T1894 arg1Of washed,and
R1588 T1886 T1884 arg2Of PBS,with
R1589 T1886 T1885 arg1Of PBS,sterile
R1590 T1886 T1887 arg1Of PBS,","
R1591 T1886 T1888 arg2Of PBS,cultured
R1592 T1888 T1889 arg1Of cultured,with
R1593 T1892 T1889 arg2Of medium,with
R1594 T1892 T1890 arg1Of medium,complete
R1595 T1892 T1891 arg1Of medium,culture
R1596 T1894 T1877 arg1Of and,after
R1597 T1894 T1879 arg1Of and,","
R1598 T1894 T1881 arg2Of and,were
R1599 T1894 T1893 arg1Of and,","
R1600 T1895 T1894 arg2Of named,and
R1601 T1895 T1896 arg1Of named,as
R1602 T1898 T1896 arg2Of group,as
R1603 T1898 T1897 arg1Of group,TBI
R1604 T1899 T1900 arg1Of Cells,","
R1605 T1899 T1901 arg1Of Cells,which
R1606 T1899 T1902 arg1Of Cells,did
R1607 T1899 T1907 arg1Of Cells,were
R1608 T1899 T1908 arg2Of Cells,used
R1609 T1899 T1913 arg2Of Cells,named
R1610 T1902 T1903 arg1Of did,not
R1611 T1905 T1902 arg2Of scratch,did
R1612 T1905 T1904 arg2Of scratch,received
R1613 T1908 T1909 arg1Of used,as
R1614 T1908 T1912 arg1Of used,and
R1615 T1911 T1909 arg2Of control,as
R1616 T1911 T1910 arg1Of control,blank
R1617 T1912 T1906 arg1Of and,","
R1618 T1912 T1907 arg2Of and,were
R1619 T1913 T1912 arg2Of named,and
R1620 T1913 T1914 arg1Of named,as
R1621 T1916 T1914 arg2Of group,as
R1622 T1916 T1915 arg1Of group,sham

GO-BP

Id Subject Object Predicate Lexical cue
T1820 276-285 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

GO-CC

Id Subject Object Predicate Lexical cue
T1920 335-340 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1919 195-199 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1819 440-530 Sentence denotes Cells, which did not received scratch, were used as blank control and named as sham group.
T1818 308-439 Sentence denotes Immediately after scratch, cells were washed twice with sterile PBS, cultured with complete culture medium, and named as TBI group.
T1817 191-307 Sentence denotes The cell monolayer was scratched with a sterile 26G syringe needle, resulting in the formation of a 0.5 mm wide gap.
T1816 125-190 Sentence denotes Astrocytes were planted in 6-well plates and grown to confluence.
T1815 57-124 Sentence denotes Astrocyte scratch injury was performed as in a previous report [7].
T1814 5-56 Sentence denotes In Vitro Model of TBI Established by Scratch Injury
T1813 0-4 Sentence denotes 2.2.
T43 0-4 Sentence denotes 2.2.
T44 5-56 Sentence denotes In Vitro Model of TBI Established by Scratch Injury
T45 57-124 Sentence denotes Astrocyte scratch injury was performed as in a previous report [7].
T46 125-190 Sentence denotes Astrocytes were planted in 6-well plates and grown to confluence.
T47 191-307 Sentence denotes The cell monolayer was scratched with a sterile 26G syringe needle, resulting in the formation of a 0.5 mm wide gap.
T48 308-439 Sentence denotes Immediately after scratch, cells were washed twice with sterile PBS, cultured with complete culture medium, and named as TBI group.
T49 440-530 Sentence denotes Cells, which did not received scratch, were used as blank control and named as sham group.

ICD10

Id Subject Object Predicate Lexical cue
T1918 75-81 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T1917 50-56 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes Injury

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2031 364-414 Regulation denotes sterile PBS, cultured with complete culture medium
T2030 335-340 Entity denotes cells
T2029 191-199 Entity denotes The cell
T2028 57-123 Entity denotes Astrocyte scratch injury was performed as in a previous report [7]
T2027 125-135 Entity denotes Astrocytes
T2026 364-414 Protein denotes sterile PBS, cultured with complete culture medium
T2025 440-460 Entity denotes Cells, which did not
T2024 519-523 Entity denotes sham
T2023 231-238 Protein denotes sterile
R1725 T2026 T2031 themeOf "sterile PBS, cultured with complete culture medium","sterile PBS, cultured with complete culture medium"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1927 23-26 NNP denotes TBI
T1926 20-22 IN denotes of
T1925 14-19 NNP denotes Model
T1924 8-13 NNP denotes Vitro
T1923 5-7 IN denotes In
T1922 3-4 . denotes .
T1921 0-3 CD denotes 2.2
T2022 529-530 . denotes .
T2021 524-529 NN denotes group
T2020 519-523 NN denotes sham
T2019 516-518 IN denotes as
T2018 510-515 VBN denotes named
T2017 506-509 CC denotes and
T2016 498-505 NN denotes control
T2015 492-497 JJ denotes blank
T2014 489-491 IN denotes as
T2013 484-488 VBN denotes used
T2012 479-483 VBD denotes were
T2011 477-478 , denotes ,
T2010 470-477 NN denotes scratch
T2009 461-469 VBN denotes received
T2008 457-460 RB denotes not
T2007 453-456 VBD denotes did
T2006 447-452 WDT denotes which
T2005 445-446 , denotes ,
T2004 440-445 NNS denotes Cells
T2003 438-439 . denotes .
T2002 433-438 NN denotes group
T2001 429-432 NNP denotes TBI
T2000 426-428 IN denotes as
T1999 420-425 VBN denotes named
T1998 416-419 CC denotes and
T1997 414-415 , denotes ,
T1996 408-414 NN denotes medium
T1995 400-407 NN denotes culture
T1994 391-399 JJ denotes complete
T1993 386-390 IN denotes with
T1992 377-385 VBN denotes cultured
T1991 375-376 , denotes ,
T1990 372-375 NNP denotes PBS
T1989 364-371 JJ denotes sterile
T1988 359-363 IN denotes with
T1987 353-358 RB denotes twice
T1986 346-352 VBN denotes washed
T1985 341-345 VBD denotes were
T1984 335-340 NNS denotes cells
T1983 333-334 , denotes ,
T1982 326-333 NN denotes scratch
T1981 320-325 IN denotes after
T1980 308-319 RB denotes Immediately
T1979 306-307 . denotes .
T1978 303-306 NN denotes gap
T1977 298-302 JJ denotes wide
T1976 295-297 NN denotes mm
T1975 291-294 CD denotes 0.5
T1974 289-290 DT denotes a
T1973 286-288 IN denotes of
T1972 276-285 NN denotes formation
T1971 272-275 DT denotes the
T1970 269-271 IN denotes in
T1969 259-268 VBG denotes resulting
T1968 257-258 , denotes ,
T1967 251-257 NN denotes needle
T1966 243-250 NN denotes syringe
T1965 239-242 JJ denotes 26G
T1964 231-238 JJ denotes sterile
T1963 229-230 DT denotes a
T1962 224-228 IN denotes with
T1961 214-223 VBN denotes scratched
T1960 210-213 VBD denotes was
T1959 200-209 NN denotes monolayer
T1958 195-199 NN denotes cell
T1957 191-194 DT denotes The
T1956 189-190 . denotes .
T1955 179-189 NN denotes confluence
T1954 176-178 TO denotes to
T1953 170-175 VBN denotes grown
T1952 166-169 CC denotes and
T1951 159-165 NNS denotes plates
T1950 152-158 JJ denotes 6-well
T1949 149-151 IN denotes in
T1948 141-148 VBN denotes planted
T1947 136-140 VBD denotes were
T1946 125-135 NNS denotes Astrocytes
T1945 123-124 . denotes .
T1944 122-123 NNP denotes ]
T1943 121-122 CD denotes 7
T1942 120-121 NN denotes [
T1941 113-119 NN denotes report
T1940 104-112 JJ denotes previous
T1939 102-103 DT denotes a
T1938 99-101 IN denotes in
T1937 96-98 IN denotes as
T1936 86-95 VBN denotes performed
T1935 82-85 VBD denotes was
T1934 75-81 NN denotes injury
T1933 67-74 NN denotes scratch
T1932 57-66 NNP denotes Astrocyte
T1931 50-56 NNP denotes Injury
T1930 42-49 NNP denotes Scratch
T1929 39-41 IN denotes by
T1928 27-38 VBN denotes Established
R1627 T1925 T1923 pobj Model,In
R1628 T1926 T1925 prep of,Model
R1629 T1927 T1926 pobj TBI,of
R1630 T1928 T1936 nsubjpass Established,performed
R1631 T1929 T1928 agent by,Established
R1632 T1930 T1934 compound Scratch,injury
R1633 T1931 T1932 compound Injury,Astrocyte
R1634 T1932 T1934 compound Astrocyte,injury
R1635 T1933 T1934 compound scratch,injury
R1636 T1934 T1929 pobj injury,by
R1637 T1935 T1936 auxpass was,performed
R1638 T1936 T1936 ROOT performed,performed
R1639 T1937 T1936 prep as,performed
R1640 T1938 T1937 prep in,as
R1641 T1939 T1941 det a,report
R1642 T1940 T1941 amod previous,report
R1643 T1941 T1938 pobj report,in
R1644 T1942 T1937 pobj [,as
R1645 T1943 T1942 nummod 7,[
R1646 T1944 T1942 conj ],[
R1647 T1945 T1936 punct .,performed
R1648 T1946 T1948 nsubjpass Astrocytes,planted
R1649 T1947 T1948 auxpass were,planted
R1650 T1948 T1948 ROOT planted,planted
R1651 T1949 T1948 prep in,planted
R1652 T1950 T1951 amod 6-well,plates
R1653 T1951 T1949 pobj plates,in
R1654 T1952 T1948 cc and,planted
R1655 T1953 T1948 conj grown,planted
R1656 T1954 T1953 prep to,grown
R1657 T1955 T1954 pobj confluence,to
R1658 T1956 T1948 punct .,planted
R1659 T1957 T1959 det The,monolayer
R1660 T1958 T1959 compound cell,monolayer
R1661 T1959 T1961 nsubjpass monolayer,scratched
R1662 T1960 T1961 auxpass was,scratched
R1663 T1961 T1961 ROOT scratched,scratched
R1664 T1962 T1961 prep with,scratched
R1665 T1963 T1967 det a,needle
R1666 T1964 T1967 amod sterile,needle
R1667 T1965 T1967 compound 26G,needle
R1668 T1966 T1967 compound syringe,needle
R1669 T1967 T1962 pobj needle,with
R1670 T1968 T1961 punct ",",scratched
R1671 T1969 T1961 advcl resulting,scratched
R1672 T1970 T1969 prep in,resulting
R1673 T1971 T1972 det the,formation
R1674 T1972 T1970 pobj formation,in
R1675 T1973 T1972 prep of,formation
R1676 T1974 T1978 det a,gap
R1677 T1975 T1976 nummod 0.5,mm
R1678 T1976 T1978 nmod mm,gap
R1679 T1977 T1978 amod wide,gap
R1680 T1978 T1973 pobj gap,of
R1681 T1979 T1961 punct .,scratched
R1682 T1980 T1981 advmod Immediately,after
R1683 T1981 T1986 prep after,washed
R1684 T1982 T1981 pobj scratch,after
R1685 T1983 T1986 punct ",",washed
R1686 T1984 T1986 nsubjpass cells,washed
R1687 T1985 T1986 auxpass were,washed
R1688 T1986 T1986 ROOT washed,washed
R1689 T1987 T1986 advmod twice,washed
R1690 T1988 T1986 prep with,washed
R1691 T1989 T1990 amod sterile,PBS
R1692 T1990 T1988 pobj PBS,with
R1693 T1991 T1986 punct ",",washed
R1694 T1992 T1986 conj cultured,washed
R1695 T1993 T1992 prep with,cultured
R1696 T1994 T1996 amod complete,medium
R1697 T1995 T1996 compound culture,medium
R1698 T1996 T1993 pobj medium,with
R1699 T1997 T1992 punct ",",cultured
R1700 T1998 T1992 cc and,cultured
R1701 T1999 T1992 conj named,cultured
R1702 T2000 T1999 prep as,named
R1703 T2001 T2002 compound TBI,group
R1704 T2002 T2000 pobj group,as
R1705 T2003 T1986 punct .,washed
R1706 T2004 T2013 nsubjpass Cells,used
R1707 T2005 T2004 punct ",",Cells
R1708 T2006 T2009 nsubjpass which,received
R1709 T2007 T2009 aux did,received
R1710 T2008 T2009 neg not,received
R1711 T2009 T2004 relcl received,Cells
R1712 T2010 T2009 dobj scratch,received
R1713 T2011 T2013 punct ",",used
R1714 T2012 T2013 auxpass were,used
R1715 T2013 T2013 ROOT used,used
R1716 T2014 T2013 prep as,used
R1717 T2015 T2016 amod blank,control
R1718 T2016 T2014 pobj control,as
R1719 T2017 T2013 cc and,used
R1720 T2018 T2013 conj named,used
R1721 T2019 T2018 prep as,named
R1722 T2020 T2021 amod sham,group
R1723 T2021 T2019 pobj group,as
R1724 T2022 T2013 punct .,used
R1623 T1921 T1921 ROOT 2.2,2.2
R1624 T1922 T1921 punct .,2.2
R1625 T1923 T1936 prep In,performed
R1626 T1924 T1925 compound Vitro,Model