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PMC:3317373 / 20527-20631 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8251 97-104 NN denotes scratch
T8250 91-96 IN denotes after
T8249 80-90 NN denotes astrocytes
T8248 77-79 IN denotes in
T8247 70-76 NN denotes deaths
T8246 65-69 NN denotes cell
T8245 60-64 JJ denotes more
T8244 57-59 IN denotes in
T8243 47-56 VB denotes resulting
T8242 42-46 NN denotes MMP9
T8241 38-41 CC denotes and
T8240 36-37 -COMMA- denotes ,
T8239 32-36 NN denotes IL-6
T8238 30-31 -COMMA- denotes ,
T8237 25-30 NN denotes IL-1β
T8236 23-24 -COMMA- denotes ,
T8235 18-23 NN denotes TNF-α
T8234 15-17 IN denotes of
T8233 4-14 NN denotes expression
T8232 0-3 DT denotes the
R6783 T8233 T8232 arg1Of expression,the
R6784 T8233 T8234 arg1Of expression,of
R6785 T8235 T8236 arg1Of TNF-α,","
R6786 T8236 T8238 arg1Of ",",","
R6787 T8237 T8236 arg2Of IL-1β,","
R6788 T8238 T8241 arg1Of ",",and
R6789 T8239 T8238 arg2Of IL-6,","
R6790 T8241 T8234 arg2Of and,of
R6791 T8241 T8240 arg1Of and,","
R6792 T8242 T8241 arg2Of MMP9,and
R6793 T8243 T8244 arg1Of resulting,in
R6794 T8247 T8244 arg2Of deaths,in
R6795 T8247 T8245 arg1Of deaths,more
R6796 T8247 T8246 arg1Of deaths,cell
R6797 T8247 T8248 arg1Of deaths,in
R6798 T8249 T8248 arg2Of astrocytes,in
R6799 T8249 T8250 arg1Of astrocytes,after

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7341 42-46 Protein denotes MMP9
T7340 32-36 Protein denotes IL-6
T7339 25-30 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8386 32-36 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8371 18-23 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8379 25-30 http://www.uniprot.org/uniprot/P01584 denotes IL-1β

GO-BP

Id Subject Object Predicate Lexical cue
T7367 65-76 http://purl.obolibrary.org/obo/GO_0008219 denotes cell deaths
T7355 70-76 http://purl.obolibrary.org/obo/GO_0016265 denotes deaths

GO-MF

Id Subject Object Predicate Lexical cue
T8289 32-36 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T8298 65-69 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T8356 42-46 Protein denotes MMP9
T8355 32-36 Protein denotes IL-6
T8354 25-30 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9937 4-14 Gene_expression denotes expression
T9915 42-46 Protein denotes MMP9
T9914 32-36 Protein denotes IL-6
T9913 25-30 Protein denotes IL-1β
R8164 T9913 T9937 themeOf IL-1β,expression
R8165 T9914 T9937 themeOf IL-6,expression
R8166 T9915 T9937 themeOf MMP9,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8493 4-14 Gene_expression denotes expression
T8471 42-46 Protein denotes MMP9
T8470 32-36 Protein denotes IL-6
T8469 25-30 Protein denotes IL-1β
R6892 T8469 T8493 themeOf IL-1β,expression
R6893 T8470 T8493 themeOf IL-6,expression
R6894 T8471 T8493 themeOf MMP9,expression

DLUT931

Id Subject Object Predicate Lexical cue
T8442 4-14 Gene_expression denotes expression
T8420 42-46 Protein denotes MMP9
T8419 32-36 Protein denotes IL-6
T8418 25-30 Protein denotes IL-1β
R6839 T8418 T8442 themeOf IL-1β,expression
R6840 T8419 T8442 themeOf IL-6,expression
R6841 T8420 T8442 themeOf MMP9,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10090 0-104 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10089 0-104 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10088 0-104 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10087 0-104 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10022 42-46 Protein denotes MMP9
T10017 25-30 Protein denotes IL-1β
T9989 18-23 Protein denotes TNF-α
T9961 80-90 Entity denotes astrocytes
T9950 32-36 Protein denotes IL-6
R8182 T9950 T10087 themeOf IL-6,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8210 T10017 T10090 themeOf IL-1β,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8211 T9989 T10088 themeOf TNF-α,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8213 T10022 T10089 themeOf MMP9,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9659 97-104 NN denotes scratch
T9658 91-96 IN denotes after
T9657 80-90 NNS denotes astrocytes
T9656 77-79 IN denotes in
T9655 70-76 NNS denotes deaths
T9654 65-69 NN denotes cell
T9653 60-64 JJR denotes more
T9652 57-59 IN denotes in
T9651 47-56 VBG denotes resulting
T9650 42-46 NNP denotes MMP9
T9649 38-41 CC denotes and
T9648 36-37 , denotes ,
T9647 32-36 NNP denotes IL-6
T9646 30-31 , denotes ,
T9645 25-30 NNP denotes IL-1β
T9644 23-24 , denotes ,
T9643 18-23 NNP denotes TNF-α
T9642 15-17 IN denotes of
T9641 4-14 NN denotes expression
T9640 0-3 DT denotes the
R7890 T9643 T9642 pobj TNF-α,of
R7892 T9644 T9643 punct ",",TNF-α
R7893 T9645 T9643 conj IL-1β,TNF-α
R7895 T9646 T9645 punct ",",IL-1β
R7896 T9647 T9645 conj IL-6,IL-1β
R7897 T9648 T9647 punct ",",IL-6
R7901 T9649 T9647 cc and,IL-6
R7903 T9650 T9647 conj MMP9,IL-6
R7906 T9652 T9651 prep in,resulting
R7907 T9653 T9655 amod more,deaths
R7909 T9654 T9655 compound cell,deaths
R7910 T9655 T9652 pobj deaths,in
R7911 T9656 T9655 prep in,deaths
R7913 T9657 T9656 pobj astrocytes,in
R7914 T9658 T9651 prep after,resulting
R8074 T9640 T9641 det the,expression
R8082 T9642 T9641 prep of,expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8732 47-56 Gene_expression denotes resulting
T8731 47-56 Gene_expression denotes resulting
T8730 47-56 Gene_expression denotes resulting
T8729 47-56 Gene_expression denotes resulting
T8728 4-14 Gene_expression denotes expression
T8727 4-14 Gene_expression denotes expression
T8726 4-14 Gene_expression denotes expression
T8725 4-14 Gene_expression denotes expression
T8719 18-23 Protein denotes TNF-α
T8722 42-46 Protein denotes MMP9
T8721 32-36 Protein denotes IL-6
T8720 25-30 Protein denotes IL-1β
R7049 T8719 T8725 themeOf TNF-α,expression
R7050 T8719 T8729 themeOf TNF-α,resulting
R7051 T8720 T8726 themeOf IL-1β,expression
R7052 T8720 T8730 themeOf IL-1β,resulting
R7053 T8721 T8727 themeOf IL-6,expression
R7054 T8721 T8731 themeOf IL-6,resulting
R7055 T8722 T8728 themeOf MMP9,expression
R7056 T8722 T8732 themeOf MMP9,resulting

testone

Id Subject Object Predicate Lexical cue
T7107 4-14 Gene_expression denotes expression
T7079 42-46 Protein denotes MMP9
T7078 32-36 Protein denotes IL-6
T7077 25-30 Protein denotes IL-1β
R5824 T7077 T7107 themeOf IL-1β,expression
R5825 T7078 T7107 themeOf IL-6,expression
R5826 T7079 T7107 themeOf MMP9,expression

test3

Id Subject Object Predicate Lexical cue
T7193 42-46 Protein denotes MMP9
T7192 32-36 Protein denotes IL-6
T7191 25-30 Protein denotes IL-1β
T7190 4-14 Gene_expression denotes expression
T7135 42-46 Protein denotes MMP9
T7134 32-36 Protein denotes IL-6
T7133 25-30 Protein denotes IL-1β
R5865 T7191 T7190 themeOf IL-1β,expression
R5866 T7192 T7190 themeOf IL-6,expression
R5867 T7193 T7190 themeOf MMP9,expression