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PMC:3317373 / 19794-19935 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22529521-7572279-67992112 133-135 7572279 denotes 27
22529521-21833844-67992113 137-139 21833844 denotes 28

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8136 139-140 -RRB- denotes ]
T8135 137-139 CD denotes 28
T8134 135-136 -COMMA- denotes ,
T8133 133-135 CD denotes 27
T8132 132-133 -LRB- denotes [
T8131 118-131 NN denotes oxyhemoglobin
T8130 115-117 CC denotes or
T8129 111-114 NN denotes LPS
T8128 106-110 IN denotes with
T8127 96-105 NN denotes treatment
T8126 90-95 IN denotes after
T8125 79-89 NN denotes astrocytes
T8124 70-78 VB denotes cultured
T8123 67-69 IN denotes in
T8122 62-66 NN denotes IL-6
T8121 58-61 CC denotes and
T8120 56-57 -COMMA- denotes ,
T8119 51-56 NN denotes IL-1β
T8118 49-50 -COMMA- denotes ,
T8117 44-49 NN denotes TNF-α
T8116 41-43 IN denotes of
T8115 30-40 NN denotes expression
T8114 26-29 DT denotes the
T8113 15-25 VB denotes identified
T8112 9-14 NN denotes study
T8111 0-8 JJ denotes Previous
R6665 T8112 T8111 arg1Of study,Previous
R6666 T8112 T8113 arg1Of study,identified
R6667 T8113 T8126 arg1Of identified,after
R6668 T8115 T8113 arg2Of expression,identified
R6669 T8115 T8114 arg1Of expression,the
R6670 T8115 T8116 arg1Of expression,of
R6671 T8115 T8123 arg1Of expression,in
R6672 T8117 T8118 arg1Of TNF-α,","
R6673 T8118 T8121 arg1Of ",",and
R6674 T8119 T8118 arg2Of IL-1β,","
R6675 T8121 T8116 arg2Of and,of
R6676 T8121 T8120 arg1Of and,","
R6677 T8122 T8121 arg2Of IL-6,and
R6678 T8125 T8123 arg2Of astrocytes,in
R6679 T8125 T8124 arg2Of astrocytes,cultured
R6680 T8127 T8126 arg2Of treatment,after
R6681 T8127 T8128 arg1Of treatment,with
R6682 T8129 T8130 arg1Of LPS,or
R6683 T8130 T8128 arg2Of or,with
R6684 T8130 T8132 arg1Of or,[
R6685 T8131 T8130 arg2Of oxyhemoglobin,or
R6686 T8133 T8132 arg2Of 27,[
R6687 T8133 T8134 arg1Of 27,","
R6688 T8135 T8134 arg2Of 28,","
R6689 T8136 T8132 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7334 62-66 Protein denotes IL-6
T7333 51-56 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8384 62-66 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8369 44-49 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8362 44-47 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8377 51-56 http://www.uniprot.org/uniprot/P01584 denotes IL-1β

GO-MF

Id Subject Object Predicate Lexical cue
T8286 62-66 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T7241 0-141 Sentence denotes Previous study identified the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes after treatment with LPS or oxyhemoglobin [27, 28].
T187 0-141 Sentence denotes Previous study identified the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes after treatment with LPS or oxyhemoglobin [27, 28].

simple1

Id Subject Object Predicate Lexical cue
T8349 62-66 Protein denotes IL-6
T8348 51-56 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9932 30-40 Gene_expression denotes expression
T9908 62-66 Protein denotes IL-6
T9907 51-56 Protein denotes IL-1β
R8153 T9907 T9932 themeOf IL-1β,expression
R8155 T9908 T9932 themeOf IL-6,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8488 30-40 Gene_expression denotes expression
T8464 62-66 Protein denotes IL-6
T8463 51-56 Protein denotes IL-1β
R6886 T8463 T8488 themeOf IL-1β,expression
R6887 T8464 T8488 themeOf IL-6,expression

DLUT931

Id Subject Object Predicate Lexical cue
T8438 30-40 Gene_expression denotes expression
T8413 62-66 Protein denotes IL-6
T8412 51-56 Protein denotes IL-1β
R6833 T8412 T8438 themeOf IL-1β,expression
R6834 T8413 T8438 themeOf IL-6,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10101 26-89 Gene_expression denotes the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes
T10100 26-89 Gene_expression denotes the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes
T10099 26-89 Gene_expression denotes the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes
T10018 44-49 Protein denotes TNF-α
T9997 62-66 Protein denotes IL-6
T9986 51-56 Protein denotes IL-1β
T9973 70-89 Entity denotes cultured astrocytes
T9959 118-131 Entity denotes oxyhemoglobin
T10047 111-114 Entity denotes LPS
R8209 T9986 T10101 themeOf IL-1β,"the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes"
R8212 T10018 T10099 themeOf TNF-α,"the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes"
R8214 T9997 T10100 themeOf IL-6,"the expression of TNF-α, IL-1β, and IL-6 in cultured astrocytes"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9540 140-141 . denotes .
T9539 139-140 NN denotes ]
T9538 137-139 CD denotes 28
T9537 135-136 , denotes ,
T9536 133-135 CD denotes 27
T9535 132-133 NNP denotes [
T9534 118-131 VBN denotes oxyhemoglobin
T9533 115-117 CC denotes or
T9532 111-114 NNP denotes LPS
T9531 106-110 IN denotes with
T9530 96-105 NN denotes treatment
T9529 90-95 IN denotes after
T9528 79-89 NNS denotes astrocytes
T9527 70-78 JJ denotes cultured
T9526 67-69 IN denotes in
T9525 62-66 NNP denotes IL-6
T9524 58-61 CC denotes and
T9523 56-57 , denotes ,
T9522 51-56 NNP denotes IL-1β
T9521 49-50 , denotes ,
T9520 44-49 NNP denotes TNF-α
T9519 41-43 IN denotes of
T9518 30-40 NN denotes expression
T9517 26-29 DT denotes the
T9516 15-25 VBD denotes identified
T9515 9-14 NN denotes study
T9514 0-8 JJ denotes Previous
R7838 T9514 T9515 amod Previous,study
R7839 T9515 T9516 nsubj study,identified
R7841 T9516 T9516 ROOT identified,identified
R7842 T9517 T9518 det the,expression
R7843 T9518 T9516 dobj expression,identified
R7845 T9519 T9518 prep of,expression
R7846 T9520 T9519 pobj TNF-α,of
R7848 T9521 T9520 punct ",",TNF-α
R7849 T9522 T9520 conj IL-1β,TNF-α
R7850 T9523 T9522 punct ",",IL-1β
R7852 T9524 T9522 cc and,IL-1β
R7853 T9525 T9522 conj IL-6,IL-1β
R7854 T9526 T9516 prep in,identified
R7856 T9527 T9528 amod cultured,astrocytes
R7857 T9528 T9526 pobj astrocytes,in
R7858 T9529 T9516 prep after,identified
R7876 T9539 T9535 appos ],[
R7877 T9540 T9516 punct .,identified
R7862 T9530 T9529 pobj treatment,after
R7863 T9531 T9530 prep with,treatment
R7865 T9532 T9531 pobj LPS,with
R7866 T9533 T9530 cc or,treatment
R7868 T9534 T9535 compound oxyhemoglobin,[
R7869 T9535 T9516 dobj [,identified
R7870 T9536 T9535 nummod 27,[
R7872 T9537 T9535 punct ",",[
R7873 T9538 T9539 nummod 28,]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8694 62-66 Protein denotes IL-6
T8693 51-56 Protein denotes IL-1β
T8692 44-49 Protein denotes TNF-α
T8698 30-40 Gene_expression denotes expression
T8697 30-40 Gene_expression denotes expression
T8696 30-40 Gene_expression denotes expression
T8695 118-131 Protein denotes oxyhemoglobin
R7032 T8692 T8696 themeOf TNF-α,expression
R7033 T8693 T8697 themeOf IL-1β,expression
R7034 T8694 T8698 themeOf IL-6,expression

testone

Id Subject Object Predicate Lexical cue
T7100 30-40 Gene_expression denotes expression
T7072 62-66 Protein denotes IL-6
T7071 51-56 Protein denotes IL-1β
R5819 T7071 T7100 themeOf IL-1β,expression
R5820 T7072 T7100 themeOf IL-6,expression

test3

Id Subject Object Predicate Lexical cue
T7179 62-66 Protein denotes IL-6
T7178 51-56 Protein denotes IL-1β
T7177 30-40 Gene_expression denotes expression
T7128 62-66 Protein denotes IL-6
T7127 51-56 Protein denotes IL-1β
R5859 T7179 T7177 themeOf IL-6,expression
R5858 T7178 T7177 themeOf IL-1β,expression