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PMC:3317373 / 17832-17897 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7800 58-65 NN denotes scratch
T7799 52-57 IN denotes after
T7798 47-51 NN denotes MMP9
T7797 43-46 CC denotes and
T7796 41-42 -COMMA- denotes ,
T7795 37-41 NN denotes IL-6
T7794 35-36 -COMMA- denotes ,
T7793 30-35 NN denotes IL-1β
T7792 28-29 -COMMA- denotes ,
T7791 23-28 NN denotes TNF-α
T7790 20-22 IN denotes of
T7789 5-19 NN denotes overexpression
T7788 0-4 IN denotes that
R6330 T7789 T7790 arg1Of overexpression,of
R6333 T7791 T7792 arg1Of TNF-α,","
R6334 T7792 T7794 arg1Of ",",","
R6335 T7793 T7792 arg2Of IL-1β,","
R6336 T7794 T7797 arg1Of ",",and
R6337 T7795 T7794 arg2Of IL-6,","
R6338 T7797 T7790 arg2Of and,of
R6339 T7797 T7796 arg1Of and,","
R6340 T7797 T7799 arg1Of and,after
R6341 T7798 T7797 arg2Of MMP9,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7330 47-51 Protein denotes MMP9
T7329 37-41 Protein denotes IL-6
T7328 30-35 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8383 37-41 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8368 23-28 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8361 23-26 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8376 30-35 http://www.uniprot.org/uniprot/P01584 denotes IL-1β

GO-MF

Id Subject Object Predicate Lexical cue
T8285 37-41 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

simple1

Id Subject Object Predicate Lexical cue
T8345 47-51 Protein denotes MMP9
T8344 37-41 Protein denotes IL-6
T8343 30-35 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9927 5-19 Positive_regulation denotes overexpression
T9904 47-51 Protein denotes MMP9
T9903 37-41 Protein denotes IL-6
T9902 30-35 Protein denotes IL-1β
R8145 T9902 T9927 themeOf IL-1β,overexpression
R8147 T9903 T9927 themeOf IL-6,overexpression
R8148 T9904 T9927 themeOf MMP9,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8482 5-19 Positive_regulation denotes overexpression
T8460 47-51 Protein denotes MMP9
T8459 37-41 Protein denotes IL-6
T8458 30-35 Protein denotes IL-1β
R6879 T8458 T8482 themeOf IL-1β,overexpression
R6880 T8459 T8482 themeOf IL-6,overexpression
R6882 T8460 T8482 themeOf MMP9,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T8432 5-19 Positive_regulation denotes overexpression
T8409 47-51 Protein denotes MMP9
T8408 37-41 Protein denotes IL-6
T8407 30-35 Protein denotes IL-1β
R6828 T8407 T8432 themeOf IL-1β,overexpression
R6829 T8408 T8432 themeOf IL-6,overexpression
R6830 T8409 T8432 themeOf MMP9,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10084 0-65 Gene_expression denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10083 0-65 Positive_regulation denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10082 0-65 Gene_expression denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10081 0-65 Positive_regulation denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10080 0-65 Gene_expression denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10079 0-65 Gene_expression denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10078 0-65 Positive_regulation denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10077 0-65 Positive_regulation denotes that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch
T10031 30-35 Protein denotes IL-1β
T10024 47-65 Protein denotes MMP9 after scratch
T10007 37-41 Protein denotes IL-6
T9946 23-28 Protein denotes TNF-α
R8178 T9946 T10077 themeOf TNF-α,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8179 T9946 T10084 themeOf TNF-α,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8215 T10024 T10079 themeOf MMP9 after scratch,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8217 T10024 T10081 themeOf MMP9 after scratch,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8221 T10007 T10078 themeOf IL-6,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8222 T10007 T10082 themeOf IL-6,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8229 T10031 T10080 themeOf IL-1β,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"
R8230 T10031 T10083 themeOf IL-1β,"that overexpression of TNF-α, IL-1β, IL-6, and MMP9 after scratch"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9190 58-65 NN denotes scratch
T9189 52-57 IN denotes after
T9188 47-51 NNP denotes MMP9
T9187 43-46 CC denotes and
T9186 41-42 , denotes ,
T9185 37-41 NNP denotes IL-6
T9184 35-36 , denotes ,
T9183 30-35 NNP denotes IL-1β
T9182 28-29 , denotes ,
T9181 23-28 NNP denotes TNF-α
T9180 20-22 IN denotes of
T9179 5-19 NN denotes overexpression
T9178 0-4 IN denotes that
R7495 T9180 T9179 prep of,overexpression
R7498 T9181 T9180 pobj TNF-α,of
R7499 T9182 T9181 punct ",",TNF-α
R7502 T9183 T9181 conj IL-1β,TNF-α
R7505 T9184 T9183 punct ",",IL-1β
R7508 T9185 T9183 conj IL-6,IL-1β
R7512 T9186 T9185 punct ",",IL-6
R7515 T9187 T9185 cc and,IL-6
R7516 T9188 T9185 conj MMP9,IL-6
R7517 T9189 T9179 prep after,overexpression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8635 5-19 Positive_regulation denotes overexpression
T8634 5-19 Positive_regulation denotes overexpression
T8633 5-19 Positive_regulation denotes overexpression
T8632 5-19 Gene_expression denotes overexpression
T8631 5-19 Gene_expression denotes overexpression
T8630 5-19 Gene_expression denotes overexpression
T8628 37-41 Protein denotes IL-6
T8627 30-35 Protein denotes IL-1β
T8626 23-28 Protein denotes TNF-α
R6998 T8627 T8631 themeOf IL-1β,overexpression
R6999 T8628 T8632 themeOf IL-6,overexpression
R7000 T8630 T8633 themeOf overexpression,overexpression
R7001 T8631 T8634 themeOf overexpression,overexpression
R7002 T8632 T8635 themeOf overexpression,overexpression
R6997 T8626 T8630 themeOf TNF-α,overexpression

testone

Id Subject Object Predicate Lexical cue
T7086 5-19 Positive_regulation denotes overexpression
T7068 47-51 Protein denotes MMP9
T7067 37-41 Protein denotes IL-6
T7066 30-35 Protein denotes IL-1β
R5814 T7066 T7086 themeOf IL-1β,overexpression
R5815 T7067 T7086 themeOf IL-6,overexpression
R5816 T7068 T7086 themeOf MMP9,overexpression

test3

Id Subject Object Predicate Lexical cue
T7163 47-51 Protein denotes MMP9
T7162 37-41 Protein denotes IL-6
T7161 30-35 Protein denotes IL-1β
T7160 5-19 Positive_regulation denotes overexpression
T7124 47-51 Protein denotes MMP9
T7123 37-41 Protein denotes IL-6
T7122 30-35 Protein denotes IL-1β
R5849 T7161 T7160 themeOf IL-1β,overexpression
R5850 T7162 T7160 themeOf IL-6,overexpression
R5851 T7163 T7160 themeOf MMP9,overexpression