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PMC:3317373 / 15431-15611 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7396 169-179 NN denotes astrocytes
T7395 160-168 VB denotes cultured
T7394 157-159 IN denotes in
T7393 152-156 NN denotes MMP9
T7392 148-151 CC denotes and
T7391 146-147 -COMMA- denotes ,
T7390 142-146 NN denotes IL-6
T7389 140-141 -COMMA- denotes ,
T7388 135-140 NN denotes IL-1β
T7387 133-134 -COMMA- denotes ,
T7386 128-133 NN denotes TNF-α
T7385 125-127 IN denotes of
T7384 110-124 NN denotes overexpression
T7383 106-109 CC denotes and
T7382 97-105 NN denotes activity
T7381 89-96 NN denotes binding
T7380 85-88 NN denotes DNA
T7379 79-84 NN denotes NF-κB
T7378 76-78 IN denotes of
T7377 63-75 NN denotes upregulation
T7376 59-62 DT denotes the
T7375 51-58 VB denotes induced
T7374 44-50 NN denotes injury
T7373 36-43 NN denotes scratch
T7372 31-35 IN denotes that
T7371 18-30 VB denotes demonstrated
T7370 12-17 NN denotes study
T7369 4-11 JJ denotes present
T7368 0-3 DT denotes The
R5909 T7370 T7368 arg1Of study,The
R5910 T7370 T7369 arg1Of study,present
R5911 T7370 T7371 arg1Of study,demonstrated
R5912 T7374 T7373 arg1Of injury,scratch
R5913 T7374 T7375 arg1Of injury,induced
R5914 T7375 T7371 arg2Of induced,demonstrated
R5915 T7375 T7372 arg1Of induced,that
R5916 T7377 T7376 arg1Of upregulation,the
R5917 T7377 T7378 arg1Of upregulation,of
R5918 T7377 T7383 arg1Of upregulation,and
R5919 T7382 T7378 arg2Of activity,of
R5920 T7382 T7379 arg1Of activity,NF-κB
R5921 T7382 T7380 arg1Of activity,DNA
R5922 T7382 T7381 arg1Of activity,binding
R5923 T7383 T7375 arg2Of and,induced
R5924 T7384 T7383 arg2Of overexpression,and
R5925 T7384 T7385 arg1Of overexpression,of
R5926 T7386 T7387 arg1Of TNF-α,","
R5927 T7387 T7389 arg1Of ",",","
R5928 T7388 T7387 arg2Of IL-1β,","
R5929 T7389 T7392 arg1Of ",",and
R5930 T7390 T7389 arg2Of IL-6,","
R5931 T7392 T7385 arg2Of and,of
R5932 T7392 T7391 arg1Of and,","
R5933 T7392 T7394 arg1Of and,in
R5934 T7393 T7392 arg2Of MMP9,and
R5935 T7396 T7394 arg2Of astrocytes,in
R5936 T7396 T7395 arg2Of astrocytes,cultured

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7316 152-156 Protein denotes MMP9
T7315 142-146 Protein denotes IL-6
T7314 135-140 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8372 135-140 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8364 128-133 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8357 128-131 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8380 142-146 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-MF

Id Subject Object Predicate Lexical cue
T8282 142-146 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T8280 89-96 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T8278 85-96 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

sentences

Id Subject Object Predicate Lexical cue
T7214 0-180 Sentence denotes The present study demonstrated that scratch injury induced the upregulation of NF-κB DNA binding activity and overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes.
T160 0-180 Sentence denotes The present study demonstrated that scratch injury induced the upregulation of NF-κB DNA binding activity and overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes.

ICD10

Id Subject Object Predicate Lexical cue
T8268 44-50 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

simple1

Id Subject Object Predicate Lexical cue
T8331 152-156 Protein denotes MMP9
T8330 142-146 Protein denotes IL-6
T8329 135-140 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9918 110-124 Gene_expression denotes overexpression
T9917 51-58 Positive_regulation denotes induced
T9916 110-124 Positive_regulation denotes overexpression
T9890 152-156 Protein denotes MMP9
T9889 142-146 Protein denotes IL-6
T9888 135-140 Protein denotes IL-1β
R8146 T9888 T9918 themeOf IL-1β,overexpression
R8150 T9889 T9918 themeOf IL-6,overexpression
R8152 T9890 T9918 themeOf MMP9,overexpression
R8167 T9916 T9917 themeOf overexpression,induced
R8168 T9916 T9917 themeOf overexpression,induced
R8169 T9916 T9917 themeOf overexpression,induced
R8170 T9918 T9917 themeOf overexpression,induced
R8171 T9918 T9917 themeOf overexpression,induced
R8172 T9918 T9917 themeOf overexpression,induced
R8173 T9918 T9916 themeOf overexpression,overexpression
R8174 T9918 T9916 themeOf overexpression,overexpression
R8175 T9918 T9916 themeOf overexpression,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8473 110-124 Positive_regulation denotes overexpression
T8472 51-58 Positive_regulation denotes induced
T8446 152-156 Protein denotes MMP9
T8445 142-146 Protein denotes IL-6
T8444 135-140 Protein denotes IL-1β
R6868 T8444 T8473 themeOf IL-1β,overexpression
R6869 T8445 T8473 themeOf IL-6,overexpression
R6870 T8446 T8472 themeOf MMP9,induced
R6871 T8446 T8473 themeOf MMP9,overexpression
R6895 T8473 T8472 themeOf overexpression,induced
R6896 T8473 T8472 themeOf overexpression,induced
R6897 T8473 T8472 themeOf overexpression,induced

DLUT931

Id Subject Object Predicate Lexical cue
T8423 63-75 Positive_regulation denotes upregulation
T8422 51-58 Positive_regulation denotes induced
T8421 110-124 Gene_expression denotes overexpression
T8395 152-156 Protein denotes MMP9
T8394 142-146 Protein denotes IL-6
T8393 135-140 Protein denotes IL-1β
R6842 T8421 T8422 themeOf overexpression,induced
R6843 T8421 T8423 themeOf overexpression,upregulation
R6844 T8421 T8422 themeOf overexpression,induced
R6845 T8421 T8422 themeOf overexpression,induced
R6846 T8421 T8423 themeOf overexpression,upregulation
R6847 T8421 T8423 themeOf overexpression,upregulation
R6848 T8423 T8422 themeOf upregulation,induced
R6849 T8423 T8422 themeOf upregulation,induced
R6850 T8423 T8422 themeOf upregulation,induced
R6818 T8393 T8421 themeOf IL-1β,overexpression
R6819 T8394 T8421 themeOf IL-6,overexpression
R6820 T8395 T8421 themeOf MMP9,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10091 59-105 Positive_regulation denotes the upregulation of NF-κB DNA binding activity
T10073 110-179 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10072 110-179 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10071 110-179 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10009 142-146 Protein denotes IL-6
T10008 135-140 Protein denotes IL-1β
T9990 160-179 Entity denotes cultured astrocytes
T9974 128-133 Protein denotes TNF-α
T9967 79-84 Protein denotes NF-κB
T9965 152-156 Protein denotes MMP9
T10070 110-179 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10069 110-179 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10068 110-179 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10067 110-179 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10066 110-179 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
R8196 T9965 T10066 themeOf MMP9,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8197 T9965 T10071 themeOf MMP9,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8203 T9974 T10070 themeOf TNF-α,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8204 T9974 T10073 themeOf TNF-α,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8223 T10008 T10067 themeOf IL-1β,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8224 T10008 T10069 themeOf IL-1β,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8225 T10009 T10068 themeOf IL-6,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8226 T10009 T10072 themeOf IL-6,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8772 179-180 . denotes .
T8771 169-179 NNS denotes astrocytes
T8770 160-168 JJ denotes cultured
T8769 157-159 IN denotes in
T8768 152-156 NNP denotes MMP9
T8767 148-151 CC denotes and
T8766 146-147 , denotes ,
T8765 142-146 NNP denotes IL-6
T8764 140-141 , denotes ,
T8763 135-140 NNP denotes IL-1β
T8762 133-134 , denotes ,
T8761 128-133 NNP denotes TNF-α
T8760 125-127 IN denotes of
T8759 110-124 NN denotes overexpression
T8758 106-109 CC denotes and
T8757 97-105 NN denotes activity
T8756 89-96 JJ denotes binding
T8755 85-88 NNP denotes DNA
T8754 79-84 NNP denotes NF-κB
T8753 76-78 IN denotes of
T8752 63-75 NN denotes upregulation
T8751 59-62 DT denotes the
T8750 51-58 VBD denotes induced
T8749 44-50 NN denotes injury
T8748 36-43 NN denotes scratch
T8747 31-35 IN denotes that
T8746 18-30 VBD denotes demonstrated
T8745 12-17 NN denotes study
T8744 4-11 JJ denotes present
T8743 0-3 DT denotes The
R7091 T8763 T8761 conj IL-1β,TNF-α
R7092 T8764 T8763 punct ",",IL-1β
R7093 T8765 T8763 conj IL-6,IL-1β
R7094 T8766 T8765 punct ",",IL-6
R7095 T8767 T8765 cc and,IL-6
R7096 T8768 T8765 conj MMP9,IL-6
R7097 T8769 T8752 prep in,upregulation
R7098 T8770 T8771 amod cultured,astrocytes
R7099 T8771 T8769 pobj astrocytes,in
R7100 T8772 T8746 punct .,demonstrated
R7071 T8743 T8745 det The,study
R7072 T8744 T8745 amod present,study
R7073 T8745 T8746 nsubj study,demonstrated
R7074 T8746 T8746 ROOT demonstrated,demonstrated
R7075 T8747 T8750 mark that,induced
R7076 T8748 T8749 compound scratch,injury
R7077 T8749 T8750 nsubj injury,induced
R7078 T8750 T8746 ccomp induced,demonstrated
R7079 T8751 T8752 det the,upregulation
R7080 T8752 T8750 dobj upregulation,induced
R7081 T8753 T8752 prep of,upregulation
R7082 T8754 T8755 compound NF-κB,DNA
R7083 T8755 T8753 pobj DNA,of
R7084 T8756 T8757 amod binding,activity
R7085 T8757 T8753 pobj activity,of
R7086 T8758 T8757 cc and,activity
R7087 T8759 T8757 conj overexpression,activity
R7088 T8760 T8759 prep of,overexpression
R7089 T8761 T8760 pobj TNF-α,of
R7090 T8762 T8761 punct ",",TNF-α

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8561 51-58 Positive_regulation denotes induced
T8560 51-58 Positive_regulation denotes induced
T8559 51-58 Positive_regulation denotes induced
T8558 51-58 Positive_regulation denotes induced
T8557 63-75 Positive_regulation denotes upregulation
T8556 63-75 Positive_regulation denotes upregulation
T8555 63-75 Positive_regulation denotes upregulation
T8554 63-75 Positive_regulation denotes upregulation
T8553 51-58 Positive_regulation denotes induced
T8552 51-58 Positive_regulation denotes induced
T8551 51-58 Positive_regulation denotes induced
T8550 51-58 Positive_regulation denotes induced
T8549 51-58 Positive_regulation denotes induced
T8548 51-58 Positive_regulation denotes induced
T8547 51-58 Positive_regulation denotes induced
T8546 51-58 Positive_regulation denotes induced
T8545 110-124 Positive_regulation denotes overexpression
T8544 110-124 Positive_regulation denotes overexpression
T8543 110-124 Positive_regulation denotes overexpression
T8542 110-124 Positive_regulation denotes overexpression
T8541 110-124 Gene_expression denotes overexpression
T8540 110-124 Gene_expression denotes overexpression
T8539 110-124 Gene_expression denotes overexpression
T8538 110-124 Gene_expression denotes overexpression
T8537 152-156 Protein denotes MMP9
T8536 142-146 Protein denotes IL-6
T8535 135-140 Protein denotes IL-1β
T8534 128-133 Protein denotes TNF-α
T8533 79-84 Protein denotes NF-κB
R6932 T8534 T8538 themeOf TNF-α,overexpression
R6933 T8535 T8539 themeOf IL-1β,overexpression
R6934 T8536 T8540 themeOf IL-6,overexpression
R6935 T8537 T8541 themeOf MMP9,overexpression
R6936 T8538 T8542 themeOf overexpression,overexpression
R6937 T8538 T8546 themeOf overexpression,induced
R6938 T8538 T8554 themeOf overexpression,upregulation
R6939 T8539 T8543 themeOf overexpression,overexpression
R6940 T8539 T8547 themeOf overexpression,induced
R6941 T8539 T8555 themeOf overexpression,upregulation
R6942 T8540 T8544 themeOf overexpression,overexpression
R6943 T8540 T8548 themeOf overexpression,induced
R6944 T8540 T8556 themeOf overexpression,upregulation
R6945 T8541 T8545 themeOf overexpression,overexpression
R6946 T8541 T8549 themeOf overexpression,induced
R6947 T8541 T8557 themeOf overexpression,upregulation
R6948 T8542 T8550 themeOf overexpression,induced
R6949 T8543 T8551 themeOf overexpression,induced
R6950 T8544 T8552 themeOf overexpression,induced
R6951 T8545 T8553 themeOf overexpression,induced
R6952 T8554 T8558 themeOf upregulation,induced
R6953 T8555 T8559 themeOf upregulation,induced
R6954 T8556 T8560 themeOf upregulation,induced
R6955 T8557 T8561 themeOf upregulation,induced

testone

Id Subject Object Predicate Lexical cue
T7082 110-124 Positive_regulation denotes overexpression
T7081 63-75 Positive_regulation denotes upregulation
T7080 51-58 Positive_regulation denotes induced
T7054 152-156 Protein denotes MMP9
T7053 142-146 Protein denotes IL-6
T7052 135-140 Protein denotes IL-1β
R5809 T7052 T7081 themeOf IL-1β,upregulation
R5810 T7052 T7082 themeOf IL-1β,overexpression
R5811 T7053 T7082 themeOf IL-6,overexpression
R5812 T7054 T7082 themeOf MMP9,overexpression
R5827 T7081 T7080 themeOf upregulation,induced

test3

Id Subject Object Predicate Lexical cue
T7110 152-156 Protein denotes MMP9
T7109 142-146 Protein denotes IL-6
T7108 135-140 Protein denotes IL-1β
T7140 152-156 Protein denotes MMP9
T7139 142-146 Protein denotes IL-6
T7138 135-140 Protein denotes IL-1β
T7137 110-124 Positive_regulation denotes overexpression
T7136 89-96 Binding denotes binding
R5834 T7138 T7137 themeOf IL-1β,overexpression
R5835 T7138 T7136 themeOf IL-1β,binding
R5836 T7139 T7137 themeOf IL-6,overexpression
R5837 T7139 T7136 themeOf IL-6,binding
R5838 T7140 T7136 themeOf MMP9,binding
R5839 T7140 T7137 themeOf MMP9,overexpression