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PMC:3317373 / 14573-15415 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6696 840-841 -RRB- denotes )
T6695 839-840 CD denotes 6
T6694 832-838 NN denotes Figure
T6693 831-832 -LRB- denotes (
T6692 829-830 -RRB- denotes )
T6691 825-829 CD denotes 0.01
T6690 823-824 SYM denotes <
T6689 821-822 NN denotes P
T6688 819-820 -COMMA- denotes ,
T6687 814-819 CD denotes 3.388
T6686 812-813 SYM denotes ±
T6685 806-811 CD denotes 76.32
T6684 799-805 IN denotes versus
T6683 793-798 CD denotes 6.343
T6682 791-792 SYM denotes ±
T6681 784-790 CD denotes 101.76
T6680 783-784 -LRB- denotes (
T6679 779-782 RB denotes too
T6678 775-778 NNP denotes TBI
T6677 772-774 NNP denotes WT
T6676 766-771 NN denotes group
T6675 763-765 IN denotes in
T6674 758-762 DT denotes that
T6673 753-757 IN denotes than
T6672 749-752 NN denotes TBI
T6671 746-748 NN denotes KO
T6670 740-745 NN denotes group
T6654 664-665 -LRB- denotes (
T6653 660-663 NN denotes TBI
T6652 657-659 NN denotes WT
T6651 651-656 NN denotes group
T6650 647-650 IN denotes for
T6649 641-646 CD denotes 0.048
T6648 639-640 SYM denotes ±
T6647 634-638 CD denotes 1.13
T6646 630-633 CC denotes and
T6645 626-629 NNP denotes TBI
T6644 623-625 NN denotes KO
T6643 617-622 NN denotes group
T6642 613-616 IN denotes for
T6641 607-612 CD denotes 0.076
T6640 605-606 SYM denotes ±
T6639 600-604 CD denotes 1.44
T6638 597-599 IN denotes as
T6637 595-596 -COMMA- denotes ,
T6636 591-595 NN denotes blot
T6635 583-590 JJ denotes western
T6634 580-582 IN denotes by
T6633 574-579 NN denotes level
T6632 566-573 NN denotes protein
T6631 561-565 NN denotes MMP9
T6630 558-560 IN denotes in
T6629 547-557 VB denotes discovered
T6628 542-546 RB denotes also
T6627 538-541 VB denotes was
T6626 527-537 NN denotes difference
T6625 515-526 JJ denotes Significant
T6624 512-513 -RRB- denotes )
T6623 511-512 -RRB- denotes )
T6622 510-511 NN denotes e
T6621 509-510 -LRB- denotes (
T6620 508-509 CD denotes 3
T6619 504-507 CC denotes and
T6618 502-503 -RRB- denotes )
T6617 501-502 DT denotes a
T6616 500-501 -LRB- denotes (
T6615 499-500 CD denotes 3
T6614 491-498 NN denotes Figures
T6613 490-491 -LRB- denotes (
T6612 488-489 -RRB- denotes )
T6611 484-488 CD denotes 0.01
T6610 482-483 SYM denotes <
T6609 480-481 NN denotes P
T6608 478-479 -COMMA- denotes ,
T6607 473-478 CD denotes 0.068
T6606 471-472 SYM denotes ±
T6602 451-452 SYM denotes ±
T6601 446-450 CD denotes 1.36
T6600 445-446 -LRB- denotes (
T6599 441-444 NN denotes TBI
T6598 438-440 NN denotes WT
T6597 432-437 NN denotes group
T6596 429-431 IN denotes in
T6595 424-428 IN denotes than
T6594 420-423 NN denotes TBI
T6593 417-419 NN denotes KO
T6592 411-416 NN denotes group
T6591 408-410 IN denotes in
T6590 401-407 JJ denotes higher
T6589 397-400 VB denotes was
T6588 392-396 NN denotes MMP9
T6587 389-391 IN denotes of
T6586 383-388 NN denotes level
T6585 378-382 NN denotes mRNA
T6584 374-377 DT denotes The
T6583 360-372 NN denotes counterparts
T6582 355-359 NN denotes sham
T6581 349-354 PRP-DOLLAR- denotes their
T6580 344-348 IN denotes with
T6579 335-343 VB denotes compared
T6578 332-334 IN denotes as
T6577 321-331 NN denotes astrocytes
T6576 318-320 NN denotes KO
T6575 314-317 CC denotes and
T6574 311-313 NN denotes WT
T6573 308-310 IN denotes in
T6572 301-307 NN denotes injury
T6571 293-300 NN denotes scratch
T6570 287-292 IN denotes after
T6569 278-286 VB denotes elevated
T6568 274-277 VB denotes was
T6567 269-273 NN denotes MMP9
T6566 266-268 IN denotes of
T6565 255-265 NN denotes Expression
T6564 243-253 NN denotes zymography
T6563 234-242 NN denotes gelatine
T6562 230-233 CC denotes and
T6561 228-229 -COMMA- denotes ,
T6560 224-228 NN denotes blot
T6559 216-223 JJ denotes western
T6558 214-215 -COMMA- denotes ,
T6557 208-214 NN denotes RT-PCR
T6556 205-207 IN denotes by
T6555 198-204 NN denotes injury
T6554 190-197 NN denotes scratch
T6553 184-189 IN denotes after
T6552 182-183 NN denotes h
T6551 179-181 CD denotes 24
T6550 176-178 IN denotes at
T6549 165-175 NN denotes astrocytes
T6548 162-164 IN denotes in
T6547 157-161 NN denotes MMP9
T6546 154-156 IN denotes of
T6545 145-153 NN denotes activity
T6544 141-144 CC denotes and
T6543 139-140 -COMMA- denotes ,
T6542 133-139 NN denotes levels
T6541 125-132 NN denotes protein
T6540 123-124 -COMMA- denotes ,
T6539 119-123 NN denotes mRNA
T6538 115-118 DT denotes the
T6537 106-114 VB denotes elevated
T6536 103-105 PRP denotes we
T6535 101-102 -COMMA- denotes ,
T6534 96-101 NN denotes study
T6533 88-95 JJ denotes present
T6532 84-87 DT denotes the
T6531 81-83 IN denotes In
T6530 72-79 NN denotes process
T6529 59-71 NN denotes inflammation
T6528 55-58 DT denotes the
T6527 45-54 VB denotes aggravate
T6526 42-44 CC denotes or
T6525 35-41 VB denotes induce
T6524 32-34 TO denotes to
T6523 21-31 NN denotes gelatinase
T6522 11-20 JJ denotes important
T6521 8-10 DT denotes an
T6520 5-7 VB denotes is
T6519 0-4 NN denotes MMP9
T6669 737-739 IN denotes in
T6668 728-736 NN denotes activity
T6667 723-727 NN denotes MMP9
T6666 716-722 JJ denotes higher
T6665 707-715 VB denotes revealed
T6664 696-706 NN denotes zymography
T6663 687-695 NN denotes Gelatine
T6662 684-685 -RRB- denotes )
T6661 683-684 CD denotes 5
T6660 676-682 NN denotes Figure
T6659 675-676 -LRB- denotes (
T6658 673-674 -RRB- denotes )
T6657 669-673 CD denotes 0.01
T6656 667-668 SYM denotes <
T6655 665-666 NN denotes P
T6605 466-470 CD denotes 1.01
T6604 459-465 IN denotes versus
T6603 453-458 CD denotes 0.090
R5396 T6519 T6520 arg1Of MMP9,is
R5397 T6523 T6520 arg2Of gelatinase,is
R5398 T6523 T6521 arg1Of gelatinase,an
R5399 T6523 T6522 arg1Of gelatinase,important
R5400 T6523 T6524 modOf gelatinase,to
R5401 T6525 T6526 arg1Of induce,or
R5402 T6526 T6524 arg1Of or,to
R5403 T6527 T6526 arg2Of aggravate,or
R5404 T6530 T6525 arg2Of process,induce
R5405 T6530 T6527 arg2Of process,aggravate
R5406 T6530 T6528 arg1Of process,the
R5407 T6530 T6529 arg1Of process,inflammation
R5408 T6534 T6531 arg2Of study,In
R5409 T6534 T6532 arg1Of study,the
R5410 T6534 T6533 arg1Of study,present
R5411 T6536 T6537 arg1Of we,elevated
R5412 T6537 T6531 arg1Of elevated,In
R5413 T6537 T6535 arg1Of elevated,","
R5414 T6539 T6538 arg1Of mRNA,the
R5415 T6539 T6540 arg1Of mRNA,","
R5416 T6540 T6544 arg1Of ",",and
R5417 T6542 T6540 arg2Of levels,","
R5418 T6542 T6541 arg1Of levels,protein
R5419 T6544 T6537 arg2Of and,elevated
R5420 T6544 T6543 arg1Of and,","
R5421 T6545 T6544 arg2Of activity,and
R5422 T6545 T6546 arg1Of activity,of
R5423 T6547 T6546 arg2Of MMP9,of
R5424 T6547 T6548 arg1Of MMP9,in
R5425 T6549 T6548 arg2Of astrocytes,in
R5426 T6549 T6550 arg1Of astrocytes,at
R5427 T6549 T6553 arg1Of astrocytes,after
R5428 T6552 T6550 arg2Of h,at
R5429 T6552 T6551 arg1Of h,24
R5430 T6555 T6553 arg2Of injury,after
R5431 T6555 T6554 arg1Of injury,scratch
R5432 T6555 T6556 arg1Of injury,by
R5433 T6557 T6558 arg1Of RT-PCR,","
R5434 T6558 T6562 arg1Of ",",and
R5435 T6560 T6558 arg2Of blot,","
R5436 T6560 T6559 arg1Of blot,western
R5437 T6562 T6556 arg2Of and,by
R5438 T6562 T6561 arg1Of and,","
R5439 T6564 T6562 arg2Of zymography,and
R5440 T6564 T6563 arg1Of zymography,gelatine
R5441 T6565 T6566 arg1Of Expression,of
R5442 T6565 T6568 arg1Of Expression,was
R5443 T6565 T6569 arg2Of Expression,elevated
R5444 T6567 T6566 arg2Of MMP9,of
R5445 T6569 T6568 arg2Of elevated,was
R5446 T6569 T6570 arg1Of elevated,after
R5447 T6572 T6570 arg2Of injury,after
R5448 T6572 T6571 arg1Of injury,scratch
R5449 T6572 T6573 arg1Of injury,in
R5450 T6572 T6578 arg1Of injury,as
R5451 T6574 T6575 arg1Of WT,and
R5452 T6576 T6575 arg2Of KO,and
R5453 T6577 T6573 arg2Of astrocytes,in
R5454 T6577 T6574 arg1Of astrocytes,WT
R5455 T6577 T6576 arg1Of astrocytes,KO
R5456 T6579 T6578 arg2Of compared,as
R5457 T6579 T6580 arg1Of compared,with
R5458 T6583 T6580 arg2Of counterparts,with
R5459 T6583 T6581 arg1Of counterparts,their
R5460 T6583 T6582 arg1Of counterparts,sham
R5461 T6586 T6584 arg1Of level,The
R5462 T6586 T6585 arg1Of level,mRNA
R5463 T6586 T6587 arg1Of level,of
R5464 T6586 T6589 arg1Of level,was
R5465 T6586 T6590 arg1Of level,higher
R5466 T6588 T6587 arg2Of MMP9,of
R5467 T6589 T6600 arg1Of was,(
R5468 T6589 T6613 arg1Of was,(
R5469 T6590 T6589 arg2Of higher,was
R5470 T6590 T6591 arg1Of higher,in
R5471 T6590 T6595 arg1Of higher,than
R5472 T6594 T6591 arg2Of TBI,in
R5473 T6594 T6592 arg1Of TBI,group
R5474 T6594 T6593 arg1Of TBI,KO
R5475 T6596 T6595 arg2Of in,than
R5476 T6599 T6596 arg2Of TBI,in
R5477 T6599 T6597 arg1Of TBI,group
R5478 T6599 T6598 arg1Of TBI,WT
R5479 T6603 T6604 arg1Of 0.090,versus
R5480 T6605 T6604 arg2Of 1.01,versus
R5481 T6605 T6606 arg1Of 1.01,±
R5482 T6607 T6600 arg2Of 0.068,(
R5483 T6607 T6601 arg1Of 0.068,1.36
R5484 T6607 T6602 arg1Of 0.068,±
R5485 T6607 T6603 arg1Of 0.068,0.090
R5486 T6607 T6608 arg1Of 0.068,","
R5487 T6609 T6608 arg2Of P,","
R5488 T6609 T6610 arg1Of P,<
R5489 T6609 T6611 arg1Of P,0.01
R5490 T6612 T6600 arg3Of ),(
R5491 T6615 T6614 arg1Of 3,Figures
R5492 T6615 T6616 arg1Of 3,(
R5493 T6615 T6617 arg1Of 3,a
R5494 T6615 T6618 arg1Of 3,)
R5495 T6615 T6619 arg1Of 3,and
R5496 T6619 T6613 arg2Of and,(
R5497 T6620 T6619 arg2Of 3,and
R5498 T6620 T6621 arg1Of 3,(
R5499 T6622 T6621 arg2Of e,(
R5500 T6623 T6621 arg3Of ),(
R5501 T6624 T6613 arg3Of ),(
R5502 T6626 T6625 arg1Of difference,Significant
R5503 T6626 T6627 arg1Of difference,was
R5504 T6626 T6629 arg2Of difference,discovered
R5505 T6629 T6627 arg2Of discovered,was
R5506 T6629 T6628 arg1Of discovered,also
R5507 T6629 T6630 arg1Of discovered,in
R5508 T6629 T6637 arg1Of discovered,","
R5509 T6629 T6638 arg1Of discovered,as
R5510 T6633 T6630 arg2Of level,in
R5511 T6633 T6631 arg1Of level,MMP9
R5512 T6633 T6632 arg1Of level,protein
R5513 T6636 T6629 arg1Of blot,discovered
R5514 T6636 T6634 arg2Of blot,by
R5515 T6636 T6635 arg1Of blot,western
R5516 T6641 T6638 arg2Of 0.076,as
R5517 T6641 T6639 arg1Of 0.076,1.44
R5518 T6641 T6640 arg1Of 0.076,±
R5519 T6641 T6642 arg1Of 0.076,for
R5520 T6645 T6643 arg1Of TBI,group
R5521 T6645 T6644 arg1Of TBI,KO
R5522 T6645 T6646 arg1Of TBI,and
R5523 T6646 T6642 arg2Of and,for
R5524 T6647 T6648 arg1Of 1.13,±
R5525 T6649 T6646 arg2Of 0.048,and
R5526 T6649 T6647 arg1Of 0.048,1.13
R5527 T6649 T6650 arg1Of 0.048,for
R5528 T6649 T6659 arg1Of 0.048,(
R5529 T6653 T6650 arg2Of TBI,for
R5530 T6653 T6651 arg1Of TBI,group
R5531 T6653 T6652 arg1Of TBI,WT
R5532 T6653 T6654 arg1Of TBI,(
R5533 T6655 T6654 arg2Of P,(
R5534 T6655 T6656 arg1Of P,<
R5535 T6655 T6657 arg1Of P,0.01
R5536 T6658 T6654 arg3Of ),(
R5537 T6660 T6659 arg2Of Figure,(
R5538 T6660 T6661 arg1Of Figure,5
R5539 T6662 T6659 arg3Of ),(
R5540 T6664 T6663 arg1Of zymography,Gelatine
R5541 T6664 T6665 arg1Of zymography,revealed
R5542 T6668 T6665 arg2Of activity,revealed
R5543 T6668 T6666 arg1Of activity,higher
R5544 T6668 T6667 arg1Of activity,MMP9
R5545 T6668 T6669 arg1Of activity,in
R5546 T6668 T6673 arg1Of activity,than
R5547 T6668 T6679 arg1Of activity,too
R5548 T6668 T6693 arg1Of activity,(
R5549 T6672 T6669 arg2Of TBI,in
R5550 T6672 T6670 arg1Of TBI,group
R5551 T6672 T6671 arg1Of TBI,KO
R5552 T6674 T6673 arg2Of that,than
R5553 T6674 T6675 arg1Of that,in
R5554 T6678 T6675 arg2Of TBI,in
R5555 T6678 T6676 arg1Of TBI,group
R5556 T6678 T6677 arg1Of TBI,WT
R5557 T6679 T6680 arg1Of too,(
R5558 T6683 T6684 arg1Of 6.343,versus
R5559 T6685 T6684 arg2Of 76.32,versus
R5560 T6685 T6686 arg1Of 76.32,±
R5561 T6687 T6680 arg2Of 3.388,(
R5562 T6687 T6681 arg1Of 3.388,101.76
R5563 T6687 T6682 arg1Of 3.388,±
R5564 T6687 T6683 arg1Of 3.388,6.343
R5565 T6687 T6688 arg1Of 3.388,","
R5566 T6689 T6688 arg2Of P,","
R5567 T6689 T6690 arg1Of P,<
R5568 T6689 T6691 arg1Of P,0.01
R5569 T6692 T6680 arg3Of ),(
R5570 T6694 T6693 arg2Of Figure,(
R5571 T6694 T6695 arg1Of Figure,6
R5572 T6696 T6693 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6500 723-727 Protein denotes MMP9
T6499 561-565 Protein denotes MMP9
T6498 392-396 Protein denotes MMP9
T6497 269-273 Protein denotes MMP9
T6496 157-161 Protein denotes MMP9
T6495 0-4 Protein denotes MMP9

GO-BP

Id Subject Object Predicate Lexical cue
T6502 208-210 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T6501 59-71 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-MF

Id Subject Object Predicate Lexical cue
T6700 208-210 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

sentences

Id Subject Object Predicate Lexical cue
T6480 687-842 Sentence denotes Gelatine zymography revealed higher MMP9 activity in group KO TBI than that in group WT TBI too (101.76 ± 6.343 versus 76.32 ± 3.388, P < 0.01) (Figure 6).
T6479 515-686 Sentence denotes Significant difference was also discovered in MMP9 protein level by western blot, as 1.44 ± 0.076 for group KO TBI and 1.13 ± 0.048 for group WT TBI (P < 0.01) (Figure 5).
T6478 374-514 Sentence denotes The mRNA level of MMP9 was higher in group KO TBI than in group WT TBI (1.36 ± 0.090 versus 1.01 ± 0.068, P < 0.01) (Figures 3(a) and 3(e)).
T6477 255-373 Sentence denotes Expression of MMP9 was elevated after scratch injury in WT and KO astrocytes as compared with their sham counterparts.
T6476 81-254 Sentence denotes In the present study, we elevated the mRNA, protein levels, and activity of MMP9 in astrocytes at 24 h after scratch injury by RT-PCR, western blot, and gelatine zymography.
T6475 0-80 Sentence denotes MMP9 is an important gelatinase to induce or aggravate the inflammation process.
T152 0-80 Sentence denotes MMP9 is an important gelatinase to induce or aggravate the inflammation process.
T153 81-254 Sentence denotes In the present study, we elevated the mRNA, protein levels, and activity of MMP9 in astrocytes at 24 h after scratch injury by RT-PCR, western blot, and gelatine zymography.
T154 255-373 Sentence denotes Expression of MMP9 was elevated after scratch injury in WT and KO astrocytes as compared with their sham counterparts.
T155 374-514 Sentence denotes The mRNA level of MMP9 was higher in group KO TBI than in group WT TBI (1.36 ± 0.090 versus 1.01 ± 0.068, P < 0.01) (Figures 3(a) and 3(e)).
T156 515-686 Sentence denotes Significant difference was also discovered in MMP9 protein level by western blot, as 1.44 ± 0.076 for group KO TBI and 1.13 ± 0.048 for group WT TBI (P < 0.01) (Figure 5).
T157 687-842 Sentence denotes Gelatine zymography revealed higher MMP9 activity in group KO TBI than that in group WT TBI too (101.76 ± 6.343 versus 76.32 ± 3.388, P < 0.01) (Figure 6).

ICD10

Id Subject Object Predicate Lexical cue
T6699 301-307 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T6698 198-204 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

simple1

Id Subject Object Predicate Lexical cue
T6707 723-727 Protein denotes MMP9
T6706 561-565 Protein denotes MMP9
T6705 392-396 Protein denotes MMP9
T6704 269-273 Protein denotes MMP9
T6703 157-161 Protein denotes MMP9
T6702 0-4 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6985 383-388 Transcription denotes level
T6984 278-286 Positive_regulation denotes elevated
T6983 255-265 Gene_expression denotes Expression
T6982 106-114 Positive_regulation denotes elevated
T6979 723-727 Protein denotes MMP9
T6978 561-565 Protein denotes MMP9
T6977 392-396 Protein denotes MMP9
T6976 269-273 Protein denotes MMP9
T6975 157-161 Protein denotes MMP9
T6974 0-4 Protein denotes MMP9
R5803 T6975 T6982 themeOf MMP9,elevated
R5804 T6976 T6983 themeOf MMP9,Expression
R5805 T6977 T6985 themeOf MMP9,level
R5807 T6983 T6984 themeOf Expression,elevated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6736 716-722 Positive_regulation denotes higher
T6735 401-407 Positive_regulation denotes higher
T6734 383-388 Transcription denotes level
T6733 255-265 Gene_expression denotes Expression
T6732 278-286 Positive_regulation denotes elevated
T6731 106-114 Positive_regulation denotes elevated
T6728 723-727 Protein denotes MMP9
T6727 561-565 Protein denotes MMP9
T6726 392-396 Protein denotes MMP9
T6725 269-273 Protein denotes MMP9
T6724 157-161 Protein denotes MMP9
T6723 0-4 Protein denotes MMP9
R5581 T6724 T6731 themeOf MMP9,elevated
R5582 T6725 T6733 themeOf MMP9,Expression
R5583 T6725 T6732 themeOf MMP9,elevated
R5584 T6726 T6734 themeOf MMP9,level
R5585 T6726 T6735 themeOf MMP9,higher
R5586 T6728 T6736 themeOf MMP9,higher
R5588 T6733 T6732 themeOf Expression,elevated

DLUT931

Id Subject Object Predicate Lexical cue
T6721 401-407 Positive_regulation denotes higher
T6720 383-388 Transcription denotes level
T6719 278-286 Positive_regulation denotes elevated
T6718 255-265 Gene_expression denotes Expression
T6717 106-114 Positive_regulation denotes elevated
T6714 723-727 Protein denotes MMP9
T6713 561-565 Protein denotes MMP9
T6712 392-396 Protein denotes MMP9
T6711 269-273 Protein denotes MMP9
T6710 157-161 Protein denotes MMP9
T6709 0-4 Protein denotes MMP9
R5574 T6710 T6717 themeOf MMP9,elevated
R5575 T6711 T6718 themeOf MMP9,Expression
R5576 T6712 T6720 themeOf MMP9,level
R5578 T6718 T6719 themeOf Expression,elevated
R5579 T6720 T6721 themeOf level,higher

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7009 255-273 Gene_expression denotes Expression of MMP9
T7008 392-396 Protein denotes MMP9
T7007 687-695 Entity denotes Gelatine
T7006 378-382 Protein denotes mRNA
T7005 318-331 Entity denotes KO astrocytes
T7004 417-419 Protein denotes KO
T7003 125-132 Protein denotes protein
T7002 623-625 Protein denotes KO
T7001 318-320 Protein denotes KO
T6999 266-273 Protein denotes of MMP9
T6998 723-727 Protein denotes MMP9
T6997 355-359 Entity denotes sham
T6996 165-175 Entity denotes astrocytes
T6993 234-242 Entity denotes gelatine
T6992 0-4 Protein denotes MMP9
T6991 154-161 Protein denotes of MMP9
T6990 746-748 Protein denotes KO
T6989 182-253 Entity denotes h after scratch injury by RT-PCR, western blot, and gelatine zymography
T6988 115-124 Protein denotes the mRNA,
T6987 208-214 Protein denotes RT-PCR
T6986 561-565 Protein denotes MMP9
R5808 T6999 T7009 themeOf of MMP9,Expression of MMP9

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6959 841-842 . denotes .
T6958 840-841 -RRB- denotes )
T6957 839-840 CD denotes 6
T6956 832-838 NN denotes Figure
T6955 831-832 -LRB- denotes (
T6954 829-830 -RRB- denotes )
T6953 825-829 CD denotes 0.01
T6871 484-488 CD denotes 0.01
T6870 482-483 VBD denotes <
T6869 480-481 NNP denotes P
T6868 478-479 , denotes ,
T6867 473-478 CD denotes 0.068
T6866 471-472 CD denotes ±
T6865 466-470 CD denotes 1.01
T6864 459-465 IN denotes versus
T6863 453-458 CD denotes 0.090
T6862 451-452 CD denotes ±
T6861 446-450 CD denotes 1.36
T6860 445-446 -LRB- denotes (
T6859 441-444 NNP denotes TBI
T6858 438-440 NNP denotes WT
T6857 432-437 NN denotes group
T6856 429-431 IN denotes in
T6855 424-428 IN denotes than
T6854 420-423 NNP denotes TBI
T6853 417-419 NNP denotes KO
T6852 411-416 NN denotes group
T6851 408-410 IN denotes in
T6850 401-407 JJR denotes higher
T6849 397-400 VBD denotes was
T6848 392-396 NNP denotes MMP9
T6847 389-391 IN denotes of
T6846 383-388 NN denotes level
T6845 378-382 NNP denotes mRNA
T6844 374-377 DT denotes The
T6843 372-373 . denotes .
T6842 360-372 NNS denotes counterparts
T6841 355-359 NN denotes sham
T6840 349-354 PRP$ denotes their
T6839 344-348 IN denotes with
T6838 335-343 VBN denotes compared
T6837 332-334 IN denotes as
T6836 321-331 NNS denotes astrocytes
T6835 318-320 NNP denotes KO
T6834 314-317 CC denotes and
T6833 311-313 NNP denotes WT
T6832 308-310 IN denotes in
T6831 301-307 NN denotes injury
T6830 293-300 NN denotes scratch
T6829 287-292 IN denotes after
T6828 278-286 VBN denotes elevated
T6827 274-277 VBD denotes was
T6826 269-273 NNP denotes MMP9
T6825 266-268 IN denotes of
T6824 255-265 NN denotes Expression
T6823 253-254 . denotes .
T6822 243-253 NN denotes zymography
T6821 234-242 JJ denotes gelatine
T6820 230-233 CC denotes and
T6819 228-229 , denotes ,
T6818 224-228 NN denotes blot
T6817 216-223 JJ denotes western
T6816 214-215 , denotes ,
T6815 208-214 NNP denotes RT-PCR
T6814 205-207 IN denotes by
T6813 198-204 NN denotes injury
T6812 190-197 NN denotes scratch
T6811 184-189 IN denotes after
T6810 182-183 NN denotes h
T6809 179-181 CD denotes 24
T6808 176-178 IN denotes at
T6807 165-175 NNS denotes astrocytes
T6806 162-164 IN denotes in
T6805 157-161 NNP denotes MMP9
T6804 154-156 IN denotes of
T6803 145-153 NN denotes activity
T6802 141-144 CC denotes and
T6801 139-140 , denotes ,
T6800 133-139 NNS denotes levels
T6799 125-132 NN denotes protein
T6798 123-124 , denotes ,
T6797 119-123 NNP denotes mRNA
T6796 115-118 DT denotes the
T6795 106-114 VBD denotes elevated
T6794 103-105 PRP denotes we
T6793 101-102 , denotes ,
T6792 96-101 NN denotes study
T6791 88-95 JJ denotes present
T6790 84-87 DT denotes the
T6789 81-83 IN denotes In
T6788 79-80 . denotes .
T6787 72-79 NN denotes process
T6786 59-71 NN denotes inflammation
T6785 55-58 DT denotes the
T6784 45-54 VB denotes aggravate
T6783 42-44 CC denotes or
T6782 35-41 VB denotes induce
T6781 32-34 TO denotes to
T6780 21-31 NN denotes gelatinase
T6779 11-20 JJ denotes important
T6778 8-10 DT denotes an
T6777 5-7 VBZ denotes is
T6776 0-4 NNP denotes MMP9
T6915 664-665 -LRB- denotes (
T6914 660-663 NNP denotes TBI
T6913 657-659 NNP denotes WT
T6912 651-656 NN denotes group
T6911 647-650 IN denotes for
T6910 641-646 CD denotes 0.048
T6909 639-640 CD denotes ±
T6908 634-638 CD denotes 1.13
T6907 630-633 CC denotes and
T6906 626-629 NNP denotes TBI
T6885 513-514 . denotes .
T6884 512-513 -RRB- denotes )
T6883 511-512 -RRB- denotes )
T6882 510-511 LS denotes e
T6881 509-510 -LRB- denotes (
T6880 508-509 CD denotes 3
T6879 504-507 CC denotes and
T6878 502-503 -RRB- denotes )
T6877 501-502 DT denotes a
T6876 500-501 -LRB- denotes (
T6875 499-500 CD denotes 3
T6874 491-498 NNS denotes Figures
T6873 490-491 -LRB- denotes (
T6872 488-489 -RRB- denotes )
T6905 623-625 NNP denotes KO
T6904 617-622 NN denotes group
T6903 613-616 IN denotes for
T6902 607-612 CD denotes 0.076
T6901 605-606 CD denotes ±
T6900 600-604 CD denotes 1.44
T6899 597-599 IN denotes as
T6898 595-596 , denotes ,
T6897 591-595 NN denotes blot
T6896 583-590 JJ denotes western
T6895 580-582 IN denotes by
T6894 574-579 NN denotes level
T6893 566-573 NN denotes protein
T6892 561-565 CD denotes MMP9
T6891 558-560 IN denotes in
T6890 547-557 VBN denotes discovered
T6889 542-546 RB denotes also
T6888 538-541 VBD denotes was
T6887 527-537 NN denotes difference
T6886 515-526 JJ denotes Significant
T6952 823-824 VBD denotes <
T6951 821-822 NNP denotes P
T6950 819-820 , denotes ,
T6949 814-819 CD denotes 3.388
T6948 812-813 CD denotes ±
T6947 806-811 CD denotes 76.32
T6946 799-805 IN denotes versus
T6945 793-798 CD denotes 6.343
T6944 791-792 CD denotes ±
T6943 784-790 CD denotes 101.76
T6942 783-784 -LRB- denotes (
T6941 779-782 RB denotes too
T6940 775-778 NNP denotes TBI
T6939 772-774 NNP denotes WT
T6938 766-771 NN denotes group
T6937 763-765 IN denotes in
T6936 758-762 DT denotes that
T6935 753-757 IN denotes than
T6934 749-752 NNP denotes TBI
T6933 746-748 NNP denotes KO
T6932 740-745 NN denotes group
T6931 737-739 IN denotes in
T6930 728-736 NN denotes activity
T6929 723-727 JJ denotes MMP9
T6928 716-722 JJR denotes higher
T6927 707-715 VBD denotes revealed
T6926 696-706 NN denotes zymography
T6925 687-695 JJ denotes Gelatine
T6924 685-686 . denotes .
T6923 684-685 -RRB- denotes )
T6922 683-684 CD denotes 5
T6921 676-682 NN denotes Figure
T6920 675-676 -LRB- denotes (
T6919 673-674 -RRB- denotes )
T6918 669-673 CD denotes 0.01
T6917 667-668 CD denotes <
T6916 665-666 NNP denotes P
R5613 T6776 T6777 nsubj MMP9,is
R5615 T6778 T6780 det an,gelatinase
R5616 T6779 T6780 amod important,gelatinase
R5617 T6780 T6777 attr gelatinase,is
R5618 T6781 T6782 aux to,induce
R5619 T6782 T6780 relcl induce,gelatinase
R5620 T6783 T6782 cc or,induce
R5621 T6784 T6782 conj aggravate,induce
R5622 T6785 T6787 det the,process
R5623 T6786 T6787 compound inflammation,process
R5624 T6787 T6784 dobj process,aggravate
R5626 T6789 T6795 prep In,elevated
R5627 T6790 T6792 det the,study
R5628 T6791 T6792 amod present,study
R5629 T6792 T6789 pobj study,In
R5630 T6793 T6795 punct ",",elevated
R5631 T6794 T6795 nsubj we,elevated
R5632 T6795 T6795 ROOT elevated,elevated
R5633 T6796 T6797 det the,mRNA
R5634 T6797 T6795 dobj mRNA,elevated
R5635 T6798 T6797 punct ",",mRNA
R5636 T6799 T6800 compound protein,levels
R5637 T6800 T6797 conj levels,mRNA
R5638 T6801 T6800 punct ",",levels
R5639 T6802 T6800 cc and,levels
R5640 T6803 T6800 conj activity,levels
R5641 T6804 T6803 prep of,activity
R5642 T6805 T6804 pobj MMP9,of
R5643 T6806 T6803 prep in,activity
R5644 T6807 T6806 pobj astrocytes,in
R5645 T6808 T6795 prep at,elevated
R5646 T6809 T6810 nummod 24,h
R5647 T6810 T6808 pobj h,at
R5648 T6811 T6795 prep after,elevated
R5649 T6812 T6813 compound scratch,injury
R5650 T6813 T6811 pobj injury,after
R5651 T6814 T6813 prep by,injury
R5652 T6815 T6814 pobj RT-PCR,by
R5653 T6816 T6815 punct ",",RT-PCR
R5654 T6817 T6818 amod western,blot
R5655 T6818 T6815 appos blot,RT-PCR
R5656 T6819 T6815 punct ",",RT-PCR
R5657 T6820 T6815 cc and,RT-PCR
R5658 T6821 T6822 compound gelatine,zymography
R5659 T6822 T6813 conj zymography,injury
R5660 T6823 T6795 punct .,elevated
R5661 T6824 T6828 nsubjpass Expression,elevated
R5662 T6825 T6824 prep of,Expression
R5663 T6826 T6825 pobj MMP9,of
R5664 T6827 T6828 auxpass was,elevated
R5665 T6828 T6828 ROOT elevated,elevated
R5666 T6829 T6828 prep after,elevated
R5667 T6830 T6831 compound scratch,injury
R5668 T6831 T6829 pobj injury,after
R5669 T6832 T6831 prep in,injury
R5670 T6833 T6832 pobj WT,in
R5671 T6834 T6833 cc and,WT
R5672 T6835 T6833 conj KO,WT
R5673 T6836 T6828 npadvmod astrocytes,elevated
R5674 T6837 T6828 prep as,elevated
R5675 T6838 T6837 prep compared,as
R5676 T6839 T6838 prep with,compared
R5677 T6840 T6842 poss their,counterparts
R5678 T6841 T6842 amod sham,counterparts
R5679 T6842 T6839 pobj counterparts,with
R5680 T6843 T6828 punct .,elevated
R5681 T6844 T6846 det The,level
R5682 T6845 T6846 amod mRNA,level
R5683 T6846 T6849 nsubj level,was
R5684 T6847 T6846 prep of,level
R5685 T6848 T6847 pobj MMP9,of
R5686 T6849 T6849 ROOT was,was
R5687 T6850 T6849 acomp higher,was
R5688 T6851 T6849 prep in,was
R5689 T6852 T6854 compound group,TBI
R5690 T6853 T6854 compound KO,TBI
R5691 T6854 T6851 pobj TBI,in
R5692 T6855 T6849 prep than,was
R5693 T6856 T6855 prep in,than
R5761 T6924 T6890 punct .,discovered
R5762 T6925 T6926 compound Gelatine,zymography
R5763 T6926 T6927 nsubj zymography,revealed
R5764 T6927 T6927 ROOT revealed,revealed
R5765 T6928 T6930 amod higher,activity
R5766 T6929 T6930 compound MMP9,activity
R5767 T6930 T6927 dobj activity,revealed
R5768 T6931 T6930 prep in,activity
R5769 T6932 T6934 compound group,TBI
R5770 T6933 T6934 compound KO,TBI
R5771 T6934 T6931 pobj TBI,in
R5694 T6857 T6859 compound group,TBI
R5695 T6858 T6859 compound WT,TBI
R5696 T6859 T6856 pobj TBI,in
R5697 T6860 T6859 punct (,TBI
R5698 T6861 T6862 nummod 1.36,±
R5699 T6862 T6870 nummod ±,<
R5700 T6863 T6870 dep 0.090,<
R5701 T6864 T6870 prep versus,<
R5702 T6865 T6866 nummod 1.01,±
R5703 T6866 T6867 nummod ±,0.068
R5704 T6867 T6864 pobj 0.068,versus
R5705 T6868 T6870 punct ",",<
R5706 T6869 T6870 nsubj P,<
R5707 T6870 T6859 appos <,TBI
R5708 T6871 T6870 npadvmod 0.01,<
R5709 T6872 T6870 punct ),<
R5710 T6873 T6859 punct (,TBI
R5711 T6874 T6873 dep Figures,(
R5712 T6875 T6874 nummod 3,Figures
R5713 T6876 T6877 punct (,a
R5714 T6877 T6875 parataxis a,3
R5715 T6878 T6877 punct ),a
R5716 T6879 T6875 cc and,3
R5717 T6880 T6875 conj 3,3
R5718 T6881 T6882 punct (,e
R5719 T6882 T6874 parataxis e,Figures
R5720 T6883 T6882 punct ),e
R5721 T6884 T6882 punct ),e
R5722 T6885 T6874 punct .,Figures
R5723 T6886 T6887 amod Significant,difference
R5724 T6887 T6890 nsubjpass difference,discovered
R5725 T6888 T6890 auxpass was,discovered
R5726 T6889 T6890 advmod also,discovered
R5727 T6890 T6890 ROOT discovered,discovered
R5728 T6891 T6890 prep in,discovered
R5729 T6892 T6894 nummod MMP9,level
R5730 T6893 T6894 compound protein,level
R5731 T6894 T6891 pobj level,in
R5732 T6895 T6890 agent by,discovered
R5733 T6896 T6897 amod western,blot
R5734 T6897 T6895 pobj blot,by
R5735 T6898 T6890 punct ",",discovered
R5736 T6899 T6890 prep as,discovered
R5737 T6900 T6901 nummod 1.44,±
R5738 T6901 T6902 compound ±,0.076
R5739 T6902 T6899 pobj 0.076,as
R5740 T6903 T6902 prep for,0.076
R5741 T6904 T6906 compound group,TBI
R5742 T6905 T6906 compound KO,TBI
R5743 T6906 T6903 pobj TBI,for
R5744 T6907 T6902 cc and,0.076
R5745 T6908 T6909 nummod 1.13,±
R5746 T6909 T6902 conj ±,0.076
R5747 T6910 T6909 conj 0.048,±
R5748 T6911 T6910 prep for,0.048
R5749 T6912 T6911 pobj group,for
R5750 T6913 T6914 compound WT,TBI
R5751 T6914 T6912 appos TBI,group
R5752 T6915 T6916 punct (,P
R5753 T6916 T6914 appos P,TBI
R5754 T6917 T6918 compound <,0.01
R5755 T6918 T6916 nummod 0.01,P
R5756 T6919 T6914 punct ),TBI
R5757 T6920 T6921 punct (,Figure
R5758 T6921 T6912 appos Figure,group
R5759 T6922 T6921 nummod 5,Figure
R5760 T6923 T6921 punct ),Figure
R5772 T6935 T6930 prep than,activity
R5773 T6936 T6935 pobj that,than
R5774 T6937 T6936 prep in,that
R5775 T6938 T6940 compound group,TBI
R5776 T6939 T6940 compound WT,TBI
R5777 T6940 T6937 pobj TBI,in
R5778 T6941 T6927 advmod too,revealed
R5779 T6942 T6927 punct (,revealed
R5780 T6943 T6944 nummod 101.76,±
R5781 T6944 T6945 nummod ±,6.343
R5782 T6945 T6927 npadvmod 6.343,revealed
R5783 T6946 T6945 prep versus,6.343
R5784 T6947 T6949 nummod 76.32,3.388
R5785 T6948 T6949 nummod ±,3.388
R5786 T6949 T6946 pobj 3.388,versus
R5787 T6950 T6952 punct ",",<
R5788 T6951 T6952 nsubj P,<
R5789 T6952 T6952 ROOT <,<
R5790 T6953 T6952 npadvmod 0.01,<
R5791 T6954 T6952 punct ),<
R5792 T6955 T6956 punct (,Figure
R5793 T6956 T6952 appos Figure,<
R5794 T6957 T6956 nummod 6,Figure
R5795 T6958 T6956 punct ),Figure
R5796 T6959 T6952 punct .,<

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6758 723-727 Protein denotes MMP9
T6757 561-565 Protein denotes MMP9
T6756 392-396 Protein denotes MMP9
T6755 278-286 Positive_regulation denotes elevated
T6754 255-265 Gene_expression denotes Expression
T6753 269-273 Protein denotes MMP9
T6752 106-114 Positive_regulation denotes elevated
T6751 157-161 Protein denotes MMP9
T6750 0-4 Protein denotes MMP9
R5593 T6751 T6752 themeOf MMP9,elevated
R5594 T6753 T6754 themeOf MMP9,Expression
R5595 T6754 T6755 themeOf Expression,elevated

testone

Id Subject Object Predicate Lexical cue
T6453 255-265 Gene_expression denotes Expression
T6452 723-727 Protein denotes MMP9
T6451 561-565 Protein denotes MMP9
T6450 392-396 Protein denotes MMP9
T6449 269-273 Protein denotes MMP9
T6448 157-161 Protein denotes MMP9
T6447 0-4 Protein denotes MMP9
R5371 T6449 T6453 themeOf MMP9,Expression

test3

Id Subject Object Predicate Lexical cue
T6465 0-4 Protein denotes MMP9
T6460 723-727 Protein denotes MMP9
T6459 561-565 Protein denotes MMP9
T6458 392-396 Protein denotes MMP9
T6457 269-273 Protein denotes MMP9
T6456 157-161 Protein denotes MMP9
T6455 0-4 Protein denotes MMP9
T6472 723-727 Protein denotes MMP9
T6471 561-565 Protein denotes MMP9
T6470 392-396 Protein denotes MMP9
T6469 278-286 Positive_regulation denotes elevated
T6468 269-273 Protein denotes MMP9
T6467 255-265 Gene_expression denotes Expression
T6466 157-161 Protein denotes MMP9
R5373 T6467 T6469 themeOf Expression,elevated
R5374 T6468 T6467 themeOf MMP9,Expression