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PMC:3317373 / 14465-15415 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6696 948-949 -RRB- denotes )
T6695 947-948 CD denotes 6
T6694 940-946 NN denotes Figure
T6693 939-940 -LRB- denotes (
T6692 937-938 -RRB- denotes )
T6691 933-937 CD denotes 0.01
T6690 931-932 SYM denotes <
T6689 929-930 NN denotes P
T6688 927-928 -COMMA- denotes ,
T6687 922-927 CD denotes 3.388
T6686 920-921 SYM denotes ±
T6685 914-919 CD denotes 76.32
T6684 907-913 IN denotes versus
T6683 901-906 CD denotes 6.343
T6682 899-900 SYM denotes ±
T6681 892-898 CD denotes 101.76
T6680 891-892 -LRB- denotes (
T6679 887-890 RB denotes too
T6678 883-886 NNP denotes TBI
T6677 880-882 NNP denotes WT
T6676 874-879 NN denotes group
T6675 871-873 IN denotes in
T6674 866-870 DT denotes that
T6673 861-865 IN denotes than
T6672 857-860 NN denotes TBI
T6671 854-856 NN denotes KO
T6670 848-853 NN denotes group
T6654 772-773 -LRB- denotes (
T6653 768-771 NN denotes TBI
T6652 765-767 NN denotes WT
T6651 759-764 NN denotes group
T6650 755-758 IN denotes for
T6649 749-754 CD denotes 0.048
T6648 747-748 SYM denotes ±
T6647 742-746 CD denotes 1.13
T6646 738-741 CC denotes and
T6645 734-737 NNP denotes TBI
T6644 731-733 NN denotes KO
T6643 725-730 NN denotes group
T6642 721-724 IN denotes for
T6641 715-720 CD denotes 0.076
T6640 713-714 SYM denotes ±
T6639 708-712 CD denotes 1.44
T6638 705-707 IN denotes as
T6637 703-704 -COMMA- denotes ,
T6636 699-703 NN denotes blot
T6635 691-698 JJ denotes western
T6634 688-690 IN denotes by
T6633 682-687 NN denotes level
T6632 674-681 NN denotes protein
T6631 669-673 NN denotes MMP9
T6630 666-668 IN denotes in
T6629 655-665 VB denotes discovered
T6628 650-654 RB denotes also
T6627 646-649 VB denotes was
T6626 635-645 NN denotes difference
T6625 623-634 JJ denotes Significant
T6624 620-621 -RRB- denotes )
T6623 619-620 -RRB- denotes )
T6622 618-619 NN denotes e
T6621 617-618 -LRB- denotes (
T6620 616-617 CD denotes 3
T6619 612-615 CC denotes and
T6618 610-611 -RRB- denotes )
T6617 609-610 DT denotes a
T6616 608-609 -LRB- denotes (
T6615 607-608 CD denotes 3
T6614 599-606 NN denotes Figures
T6613 598-599 -LRB- denotes (
T6612 596-597 -RRB- denotes )
T6611 592-596 CD denotes 0.01
T6610 590-591 SYM denotes <
T6609 588-589 NN denotes P
T6608 586-587 -COMMA- denotes ,
T6607 581-586 CD denotes 0.068
T6606 579-580 SYM denotes ±
T6602 559-560 SYM denotes ±
T6601 554-558 CD denotes 1.36
T6600 553-554 -LRB- denotes (
T6599 549-552 NN denotes TBI
T6598 546-548 NN denotes WT
T6597 540-545 NN denotes group
T6596 537-539 IN denotes in
T6595 532-536 IN denotes than
T6594 528-531 NN denotes TBI
T6593 525-527 NN denotes KO
T6592 519-524 NN denotes group
T6591 516-518 IN denotes in
T6590 509-515 JJ denotes higher
T6589 505-508 VB denotes was
T6588 500-504 NN denotes MMP9
T6587 497-499 IN denotes of
T6586 491-496 NN denotes level
T6585 486-490 NN denotes mRNA
T6584 482-485 DT denotes The
T6583 468-480 NN denotes counterparts
T6582 463-467 NN denotes sham
T6581 457-462 PRP-DOLLAR- denotes their
T6580 452-456 IN denotes with
T6579 443-451 VB denotes compared
T6578 440-442 IN denotes as
T6577 429-439 NN denotes astrocytes
T6576 426-428 NN denotes KO
T6575 422-425 CC denotes and
T6574 419-421 NN denotes WT
T6573 416-418 IN denotes in
T6572 409-415 NN denotes injury
T6571 401-408 NN denotes scratch
T6570 395-400 IN denotes after
T6569 386-394 VB denotes elevated
T6568 382-385 VB denotes was
T6567 377-381 NN denotes MMP9
T6566 374-376 IN denotes of
T6565 363-373 NN denotes Expression
T6564 351-361 NN denotes zymography
T6563 342-350 NN denotes gelatine
T6562 338-341 CC denotes and
T6561 336-337 -COMMA- denotes ,
T6560 332-336 NN denotes blot
T6559 324-331 JJ denotes western
T6558 322-323 -COMMA- denotes ,
T6557 316-322 NN denotes RT-PCR
T6556 313-315 IN denotes by
T6555 306-312 NN denotes injury
T6554 298-305 NN denotes scratch
T6553 292-297 IN denotes after
T6552 290-291 NN denotes h
T6551 287-289 CD denotes 24
T6550 284-286 IN denotes at
T6549 273-283 NN denotes astrocytes
T6548 270-272 IN denotes in
T6547 265-269 NN denotes MMP9
T6546 262-264 IN denotes of
T6545 253-261 NN denotes activity
T6544 249-252 CC denotes and
T6543 247-248 -COMMA- denotes ,
T6542 241-247 NN denotes levels
T6541 233-240 NN denotes protein
T6540 231-232 -COMMA- denotes ,
T6539 227-231 NN denotes mRNA
T6538 223-226 DT denotes the
T6537 214-222 VB denotes elevated
T6536 211-213 PRP denotes we
T6535 209-210 -COMMA- denotes ,
T6534 204-209 NN denotes study
T6533 196-203 JJ denotes present
T6532 192-195 DT denotes the
T6531 189-191 IN denotes In
T6530 180-187 NN denotes process
T6529 167-179 NN denotes inflammation
T6528 163-166 DT denotes the
T6527 153-162 VB denotes aggravate
T6526 150-152 CC denotes or
T6525 143-149 VB denotes induce
T6524 140-142 TO denotes to
T6523 129-139 NN denotes gelatinase
T6522 119-128 JJ denotes important
T6521 116-118 DT denotes an
T6520 113-115 VB denotes is
T6519 108-112 NN denotes MMP9
T6518 101-107 NNP denotes Injury
T6517 93-100 NNP denotes Scratch
T6516 87-92 IN denotes after
T6515 76-86 NN denotes Astrocytes
T6514 67-75 NNP denotes Knockout
T6513 62-66 NN denotes Nrf2
T6512 59-61 IN denotes in
T6511 50-58 VB denotes Enhanced
T6510 42-49 RB denotes Greatly
T6509 37-41 VB denotes Were
T6508 32-36 NN denotes MMP9
T6507 29-31 IN denotes of
T6506 20-28 NN denotes Activity
T6505 16-19 CC denotes and
T6504 5-15 NN denotes Expression
T6503 0-3 CD denotes 3.4
T6669 845-847 IN denotes in
T6668 836-844 NN denotes activity
T6667 831-835 NN denotes MMP9
T6666 824-830 JJ denotes higher
T6665 815-823 VB denotes revealed
T6664 804-814 NN denotes zymography
T6663 795-803 NN denotes Gelatine
T6662 792-793 -RRB- denotes )
T6661 791-792 CD denotes 5
T6660 784-790 NN denotes Figure
T6659 783-784 -LRB- denotes (
T6658 781-782 -RRB- denotes )
T6657 777-781 CD denotes 0.01
T6656 775-776 SYM denotes <
T6655 773-774 NN denotes P
T6605 574-578 CD denotes 1.01
T6604 567-573 IN denotes versus
T6603 561-566 CD denotes 0.090
R5381 T6504 T6505 arg1Of Expression,and
R5382 T6505 T6507 arg1Of and,of
R5383 T6505 T6509 arg1Of and,Were
R5384 T6505 T6511 arg2Of and,Enhanced
R5385 T6506 T6505 arg2Of Activity,and
R5386 T6508 T6507 arg2Of MMP9,of
R5387 T6511 T6509 arg2Of Enhanced,Were
R5388 T6511 T6510 arg1Of Enhanced,Greatly
R5389 T6511 T6512 arg1Of Enhanced,in
R5390 T6511 T6516 arg1Of Enhanced,after
R5391 T6515 T6512 arg2Of Astrocytes,in
R5392 T6515 T6513 arg1Of Astrocytes,Nrf2
R5393 T6515 T6514 arg1Of Astrocytes,Knockout
R5394 T6518 T6516 arg2Of Injury,after
R5395 T6518 T6517 arg1Of Injury,Scratch
R5396 T6519 T6520 arg1Of MMP9,is
R5397 T6523 T6520 arg2Of gelatinase,is
R5398 T6523 T6521 arg1Of gelatinase,an
R5399 T6523 T6522 arg1Of gelatinase,important
R5400 T6523 T6524 modOf gelatinase,to
R5401 T6525 T6526 arg1Of induce,or
R5402 T6526 T6524 arg1Of or,to
R5403 T6527 T6526 arg2Of aggravate,or
R5404 T6530 T6525 arg2Of process,induce
R5405 T6530 T6527 arg2Of process,aggravate
R5406 T6530 T6528 arg1Of process,the
R5407 T6530 T6529 arg1Of process,inflammation
R5408 T6534 T6531 arg2Of study,In
R5409 T6534 T6532 arg1Of study,the
R5410 T6534 T6533 arg1Of study,present
R5411 T6536 T6537 arg1Of we,elevated
R5412 T6537 T6531 arg1Of elevated,In
R5413 T6537 T6535 arg1Of elevated,","
R5414 T6539 T6538 arg1Of mRNA,the
R5415 T6539 T6540 arg1Of mRNA,","
R5416 T6540 T6544 arg1Of ",",and
R5417 T6542 T6540 arg2Of levels,","
R5418 T6542 T6541 arg1Of levels,protein
R5419 T6544 T6537 arg2Of and,elevated
R5420 T6544 T6543 arg1Of and,","
R5421 T6545 T6544 arg2Of activity,and
R5422 T6545 T6546 arg1Of activity,of
R5423 T6547 T6546 arg2Of MMP9,of
R5424 T6547 T6548 arg1Of MMP9,in
R5425 T6549 T6548 arg2Of astrocytes,in
R5426 T6549 T6550 arg1Of astrocytes,at
R5427 T6549 T6553 arg1Of astrocytes,after
R5428 T6552 T6550 arg2Of h,at
R5429 T6552 T6551 arg1Of h,24
R5430 T6555 T6553 arg2Of injury,after
R5431 T6555 T6554 arg1Of injury,scratch
R5432 T6555 T6556 arg1Of injury,by
R5433 T6557 T6558 arg1Of RT-PCR,","
R5434 T6558 T6562 arg1Of ",",and
R5435 T6560 T6558 arg2Of blot,","
R5436 T6560 T6559 arg1Of blot,western
R5437 T6562 T6556 arg2Of and,by
R5438 T6562 T6561 arg1Of and,","
R5439 T6564 T6562 arg2Of zymography,and
R5440 T6564 T6563 arg1Of zymography,gelatine
R5441 T6565 T6566 arg1Of Expression,of
R5442 T6565 T6568 arg1Of Expression,was
R5443 T6565 T6569 arg2Of Expression,elevated
R5444 T6567 T6566 arg2Of MMP9,of
R5445 T6569 T6568 arg2Of elevated,was
R5446 T6569 T6570 arg1Of elevated,after
R5447 T6572 T6570 arg2Of injury,after
R5448 T6572 T6571 arg1Of injury,scratch
R5449 T6572 T6573 arg1Of injury,in
R5450 T6572 T6578 arg1Of injury,as
R5451 T6574 T6575 arg1Of WT,and
R5452 T6576 T6575 arg2Of KO,and
R5453 T6577 T6573 arg2Of astrocytes,in
R5454 T6577 T6574 arg1Of astrocytes,WT
R5455 T6577 T6576 arg1Of astrocytes,KO
R5456 T6579 T6578 arg2Of compared,as
R5457 T6579 T6580 arg1Of compared,with
R5458 T6583 T6580 arg2Of counterparts,with
R5459 T6583 T6581 arg1Of counterparts,their
R5460 T6583 T6582 arg1Of counterparts,sham
R5461 T6586 T6584 arg1Of level,The
R5462 T6586 T6585 arg1Of level,mRNA
R5463 T6586 T6587 arg1Of level,of
R5464 T6586 T6589 arg1Of level,was
R5465 T6586 T6590 arg1Of level,higher
R5466 T6588 T6587 arg2Of MMP9,of
R5467 T6589 T6600 arg1Of was,(
R5468 T6589 T6613 arg1Of was,(
R5469 T6590 T6589 arg2Of higher,was
R5470 T6590 T6591 arg1Of higher,in
R5471 T6590 T6595 arg1Of higher,than
R5472 T6594 T6591 arg2Of TBI,in
R5473 T6594 T6592 arg1Of TBI,group
R5474 T6594 T6593 arg1Of TBI,KO
R5475 T6596 T6595 arg2Of in,than
R5476 T6599 T6596 arg2Of TBI,in
R5477 T6599 T6597 arg1Of TBI,group
R5478 T6599 T6598 arg1Of TBI,WT
R5479 T6603 T6604 arg1Of 0.090,versus
R5480 T6605 T6604 arg2Of 1.01,versus
R5481 T6605 T6606 arg1Of 1.01,±
R5482 T6607 T6600 arg2Of 0.068,(
R5483 T6607 T6601 arg1Of 0.068,1.36
R5484 T6607 T6602 arg1Of 0.068,±
R5485 T6607 T6603 arg1Of 0.068,0.090
R5486 T6607 T6608 arg1Of 0.068,","
R5487 T6609 T6608 arg2Of P,","
R5488 T6609 T6610 arg1Of P,<
R5489 T6609 T6611 arg1Of P,0.01
R5490 T6612 T6600 arg3Of ),(
R5491 T6615 T6614 arg1Of 3,Figures
R5492 T6615 T6616 arg1Of 3,(
R5493 T6615 T6617 arg1Of 3,a
R5494 T6615 T6618 arg1Of 3,)
R5495 T6615 T6619 arg1Of 3,and
R5496 T6619 T6613 arg2Of and,(
R5497 T6620 T6619 arg2Of 3,and
R5498 T6620 T6621 arg1Of 3,(
R5499 T6622 T6621 arg2Of e,(
R5500 T6623 T6621 arg3Of ),(
R5501 T6624 T6613 arg3Of ),(
R5502 T6626 T6625 arg1Of difference,Significant
R5503 T6626 T6627 arg1Of difference,was
R5504 T6626 T6629 arg2Of difference,discovered
R5505 T6629 T6627 arg2Of discovered,was
R5506 T6629 T6628 arg1Of discovered,also
R5507 T6629 T6630 arg1Of discovered,in
R5508 T6629 T6637 arg1Of discovered,","
R5509 T6629 T6638 arg1Of discovered,as
R5510 T6633 T6630 arg2Of level,in
R5511 T6633 T6631 arg1Of level,MMP9
R5512 T6633 T6632 arg1Of level,protein
R5513 T6636 T6629 arg1Of blot,discovered
R5514 T6636 T6634 arg2Of blot,by
R5515 T6636 T6635 arg1Of blot,western
R5516 T6641 T6638 arg2Of 0.076,as
R5517 T6641 T6639 arg1Of 0.076,1.44
R5518 T6641 T6640 arg1Of 0.076,±
R5519 T6641 T6642 arg1Of 0.076,for
R5520 T6645 T6643 arg1Of TBI,group
R5521 T6645 T6644 arg1Of TBI,KO
R5522 T6645 T6646 arg1Of TBI,and
R5523 T6646 T6642 arg2Of and,for
R5524 T6647 T6648 arg1Of 1.13,±
R5525 T6649 T6646 arg2Of 0.048,and
R5526 T6649 T6647 arg1Of 0.048,1.13
R5527 T6649 T6650 arg1Of 0.048,for
R5528 T6649 T6659 arg1Of 0.048,(
R5529 T6653 T6650 arg2Of TBI,for
R5530 T6653 T6651 arg1Of TBI,group
R5531 T6653 T6652 arg1Of TBI,WT
R5532 T6653 T6654 arg1Of TBI,(
R5533 T6655 T6654 arg2Of P,(
R5534 T6655 T6656 arg1Of P,<
R5535 T6655 T6657 arg1Of P,0.01
R5536 T6658 T6654 arg3Of ),(
R5537 T6660 T6659 arg2Of Figure,(
R5538 T6660 T6661 arg1Of Figure,5
R5539 T6662 T6659 arg3Of ),(
R5540 T6664 T6663 arg1Of zymography,Gelatine
R5541 T6664 T6665 arg1Of zymography,revealed
R5542 T6668 T6665 arg2Of activity,revealed
R5543 T6668 T6666 arg1Of activity,higher
R5544 T6668 T6667 arg1Of activity,MMP9
R5545 T6668 T6669 arg1Of activity,in
R5546 T6668 T6673 arg1Of activity,than
R5547 T6668 T6679 arg1Of activity,too
R5548 T6668 T6693 arg1Of activity,(
R5549 T6672 T6669 arg2Of TBI,in
R5550 T6672 T6670 arg1Of TBI,group
R5551 T6672 T6671 arg1Of TBI,KO
R5552 T6674 T6673 arg2Of that,than
R5553 T6674 T6675 arg1Of that,in
R5554 T6678 T6675 arg2Of TBI,in
R5555 T6678 T6676 arg1Of TBI,group
R5556 T6678 T6677 arg1Of TBI,WT
R5557 T6679 T6680 arg1Of too,(
R5558 T6683 T6684 arg1Of 6.343,versus
R5559 T6685 T6684 arg2Of 76.32,versus
R5560 T6685 T6686 arg1Of 76.32,±
R5561 T6687 T6680 arg2Of 3.388,(
R5562 T6687 T6681 arg1Of 3.388,101.76
R5563 T6687 T6682 arg1Of 3.388,±
R5564 T6687 T6683 arg1Of 3.388,6.343
R5565 T6687 T6688 arg1Of 3.388,","
R5566 T6689 T6688 arg2Of P,","
R5567 T6689 T6690 arg1Of P,<
R5568 T6689 T6691 arg1Of P,0.01
R5569 T6692 T6680 arg3Of ),(
R5570 T6694 T6693 arg2Of Figure,(
R5571 T6694 T6695 arg1Of Figure,6
R5572 T6696 T6693 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6500 831-835 Protein denotes MMP9
T6499 669-673 Protein denotes MMP9
T6498 500-504 Protein denotes MMP9
T6497 377-381 Protein denotes MMP9
T6496 265-269 Protein denotes MMP9
T6495 108-112 Protein denotes MMP9
T6494 32-36 Protein denotes MMP9

GO-BP

Id Subject Object Predicate Lexical cue
T6502 316-318 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T6501 167-179 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-MF

Id Subject Object Predicate Lexical cue
T6700 316-318 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

sentences

Id Subject Object Predicate Lexical cue
T6480 795-950 Sentence denotes Gelatine zymography revealed higher MMP9 activity in group KO TBI than that in group WT TBI too (101.76 ± 6.343 versus 76.32 ± 3.388, P < 0.01) (Figure 6).
T6479 623-794 Sentence denotes Significant difference was also discovered in MMP9 protein level by western blot, as 1.44 ± 0.076 for group KO TBI and 1.13 ± 0.048 for group WT TBI (P < 0.01) (Figure 5).
T6478 482-622 Sentence denotes The mRNA level of MMP9 was higher in group KO TBI than in group WT TBI (1.36 ± 0.090 versus 1.01 ± 0.068, P < 0.01) (Figures 3(a) and 3(e)).
T6477 363-481 Sentence denotes Expression of MMP9 was elevated after scratch injury in WT and KO astrocytes as compared with their sham counterparts.
T6476 189-362 Sentence denotes In the present study, we elevated the mRNA, protein levels, and activity of MMP9 in astrocytes at 24 h after scratch injury by RT-PCR, western blot, and gelatine zymography.
T6475 108-188 Sentence denotes MMP9 is an important gelatinase to induce or aggravate the inflammation process.
T6474 5-107 Sentence denotes Expression and Activity of MMP9 Were Greatly Enhanced in Nrf2 Knockout Astrocytes after Scratch Injury
T6473 0-4 Sentence denotes 3.4.
T150 0-4 Sentence denotes 3.4.
T151 5-107 Sentence denotes Expression and Activity of MMP9 Were Greatly Enhanced in Nrf2 Knockout Astrocytes after Scratch Injury
T152 108-188 Sentence denotes MMP9 is an important gelatinase to induce or aggravate the inflammation process.
T153 189-362 Sentence denotes In the present study, we elevated the mRNA, protein levels, and activity of MMP9 in astrocytes at 24 h after scratch injury by RT-PCR, western blot, and gelatine zymography.
T154 363-481 Sentence denotes Expression of MMP9 was elevated after scratch injury in WT and KO astrocytes as compared with their sham counterparts.
T155 482-622 Sentence denotes The mRNA level of MMP9 was higher in group KO TBI than in group WT TBI (1.36 ± 0.090 versus 1.01 ± 0.068, P < 0.01) (Figures 3(a) and 3(e)).
T156 623-794 Sentence denotes Significant difference was also discovered in MMP9 protein level by western blot, as 1.44 ± 0.076 for group KO TBI and 1.13 ± 0.048 for group WT TBI (P < 0.01) (Figure 5).
T157 795-950 Sentence denotes Gelatine zymography revealed higher MMP9 activity in group KO TBI than that in group WT TBI too (101.76 ± 6.343 versus 76.32 ± 3.388, P < 0.01) (Figure 6).

ICD10

Id Subject Object Predicate Lexical cue
T6699 409-415 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T6698 306-312 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T6697 101-107 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes Injury

simple1

Id Subject Object Predicate Lexical cue
T6707 831-835 Protein denotes MMP9
T6706 669-673 Protein denotes MMP9
T6705 500-504 Protein denotes MMP9
T6704 377-381 Protein denotes MMP9
T6703 265-269 Protein denotes MMP9
T6702 108-112 Protein denotes MMP9
T6701 32-36 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6985 491-496 Transcription denotes level
T6984 386-394 Positive_regulation denotes elevated
T6983 363-373 Gene_expression denotes Expression
T6982 214-222 Positive_regulation denotes elevated
T6981 5-15 Gene_expression denotes Expression
T6980 50-58 Positive_regulation denotes Enhanced
T6979 831-835 Protein denotes MMP9
T6978 669-673 Protein denotes MMP9
T6977 500-504 Protein denotes MMP9
T6976 377-381 Protein denotes MMP9
T6975 265-269 Protein denotes MMP9
T6974 108-112 Protein denotes MMP9
T6973 32-36 Protein denotes MMP9
R5802 T6973 T6981 themeOf MMP9,Expression
R5803 T6975 T6982 themeOf MMP9,elevated
R5804 T6976 T6983 themeOf MMP9,Expression
R5805 T6977 T6985 themeOf MMP9,level
R5806 T6981 T6980 themeOf Expression,Enhanced
R5807 T6983 T6984 themeOf Expression,elevated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6736 824-830 Positive_regulation denotes higher
T6735 509-515 Positive_regulation denotes higher
T6734 491-496 Transcription denotes level
T6733 363-373 Gene_expression denotes Expression
T6732 386-394 Positive_regulation denotes elevated
T6731 214-222 Positive_regulation denotes elevated
T6730 50-58 Positive_regulation denotes Enhanced
T6729 5-15 Gene_expression denotes Expression
T6728 831-835 Protein denotes MMP9
T6727 669-673 Protein denotes MMP9
T6726 500-504 Protein denotes MMP9
T6725 377-381 Protein denotes MMP9
T6724 265-269 Protein denotes MMP9
T6723 108-112 Protein denotes MMP9
T6722 32-36 Protein denotes MMP9
R5580 T6722 T6729 themeOf MMP9,Expression
R5581 T6724 T6731 themeOf MMP9,elevated
R5582 T6725 T6733 themeOf MMP9,Expression
R5583 T6725 T6732 themeOf MMP9,elevated
R5584 T6726 T6734 themeOf MMP9,level
R5585 T6726 T6735 themeOf MMP9,higher
R5586 T6728 T6736 themeOf MMP9,higher
R5587 T6729 T6730 themeOf Expression,Enhanced
R5588 T6733 T6732 themeOf Expression,elevated

DLUT931

Id Subject Object Predicate Lexical cue
T6721 509-515 Positive_regulation denotes higher
T6720 491-496 Transcription denotes level
T6719 386-394 Positive_regulation denotes elevated
T6718 363-373 Gene_expression denotes Expression
T6717 214-222 Positive_regulation denotes elevated
T6716 50-58 Positive_regulation denotes Enhanced
T6715 5-15 Gene_expression denotes Expression
T6714 831-835 Protein denotes MMP9
T6713 669-673 Protein denotes MMP9
T6712 500-504 Protein denotes MMP9
T6711 377-381 Protein denotes MMP9
T6710 265-269 Protein denotes MMP9
T6709 108-112 Protein denotes MMP9
T6708 32-36 Protein denotes MMP9
R5573 T6708 T6715 themeOf MMP9,Expression
R5574 T6710 T6717 themeOf MMP9,elevated
R5575 T6711 T6718 themeOf MMP9,Expression
R5576 T6712 T6720 themeOf MMP9,level
R5577 T6715 T6716 themeOf Expression,Enhanced
R5578 T6718 T6719 themeOf Expression,elevated
R5579 T6720 T6721 themeOf level,higher

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7009 363-381 Gene_expression denotes Expression of MMP9
T7008 500-504 Protein denotes MMP9
T7007 795-803 Entity denotes Gelatine
T7006 486-490 Protein denotes mRNA
T7005 426-439 Entity denotes KO astrocytes
T7004 525-527 Protein denotes KO
T7003 233-240 Protein denotes protein
T7002 731-733 Protein denotes KO
T7001 426-428 Protein denotes KO
T7000 67-86 Entity denotes Knockout Astrocytes
T6999 374-381 Protein denotes of MMP9
T6998 831-835 Protein denotes MMP9
T6997 463-467 Entity denotes sham
T6996 273-283 Entity denotes astrocytes
T6995 62-66 Protein denotes Nrf2
T6994 29-36 Protein denotes of MMP9
T6993 342-350 Entity denotes gelatine
T6992 108-112 Protein denotes MMP9
T6991 262-269 Protein denotes of MMP9
T6990 854-856 Protein denotes KO
T6989 290-361 Entity denotes h after scratch injury by RT-PCR, western blot, and gelatine zymography
T6988 223-232 Protein denotes the mRNA,
T6987 316-322 Protein denotes RT-PCR
T6986 669-673 Protein denotes MMP9
R5808 T6999 T7009 themeOf of MMP9,Expression of MMP9

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6959 949-950 . denotes .
T6958 948-949 -RRB- denotes )
T6957 947-948 CD denotes 6
T6956 940-946 NN denotes Figure
T6955 939-940 -LRB- denotes (
T6954 937-938 -RRB- denotes )
T6953 933-937 CD denotes 0.01
T6871 592-596 CD denotes 0.01
T6870 590-591 VBD denotes <
T6869 588-589 NNP denotes P
T6868 586-587 , denotes ,
T6867 581-586 CD denotes 0.068
T6866 579-580 CD denotes ±
T6865 574-578 CD denotes 1.01
T6864 567-573 IN denotes versus
T6863 561-566 CD denotes 0.090
T6862 559-560 CD denotes ±
T6861 554-558 CD denotes 1.36
T6860 553-554 -LRB- denotes (
T6859 549-552 NNP denotes TBI
T6858 546-548 NNP denotes WT
T6857 540-545 NN denotes group
T6856 537-539 IN denotes in
T6855 532-536 IN denotes than
T6854 528-531 NNP denotes TBI
T6853 525-527 NNP denotes KO
T6852 519-524 NN denotes group
T6851 516-518 IN denotes in
T6850 509-515 JJR denotes higher
T6849 505-508 VBD denotes was
T6848 500-504 NNP denotes MMP9
T6847 497-499 IN denotes of
T6846 491-496 NN denotes level
T6845 486-490 NNP denotes mRNA
T6844 482-485 DT denotes The
T6843 480-481 . denotes .
T6842 468-480 NNS denotes counterparts
T6841 463-467 NN denotes sham
T6840 457-462 PRP$ denotes their
T6839 452-456 IN denotes with
T6838 443-451 VBN denotes compared
T6837 440-442 IN denotes as
T6836 429-439 NNS denotes astrocytes
T6835 426-428 NNP denotes KO
T6834 422-425 CC denotes and
T6833 419-421 NNP denotes WT
T6832 416-418 IN denotes in
T6831 409-415 NN denotes injury
T6830 401-408 NN denotes scratch
T6829 395-400 IN denotes after
T6828 386-394 VBN denotes elevated
T6827 382-385 VBD denotes was
T6826 377-381 NNP denotes MMP9
T6825 374-376 IN denotes of
T6824 363-373 NN denotes Expression
T6823 361-362 . denotes .
T6822 351-361 NN denotes zymography
T6821 342-350 JJ denotes gelatine
T6820 338-341 CC denotes and
T6819 336-337 , denotes ,
T6818 332-336 NN denotes blot
T6817 324-331 JJ denotes western
T6816 322-323 , denotes ,
T6815 316-322 NNP denotes RT-PCR
T6814 313-315 IN denotes by
T6813 306-312 NN denotes injury
T6812 298-305 NN denotes scratch
T6811 292-297 IN denotes after
T6810 290-291 NN denotes h
T6809 287-289 CD denotes 24
T6808 284-286 IN denotes at
T6807 273-283 NNS denotes astrocytes
T6806 270-272 IN denotes in
T6805 265-269 NNP denotes MMP9
T6804 262-264 IN denotes of
T6803 253-261 NN denotes activity
T6802 249-252 CC denotes and
T6801 247-248 , denotes ,
T6800 241-247 NNS denotes levels
T6799 233-240 NN denotes protein
T6798 231-232 , denotes ,
T6797 227-231 NNP denotes mRNA
T6796 223-226 DT denotes the
T6795 214-222 VBD denotes elevated
T6794 211-213 PRP denotes we
T6793 209-210 , denotes ,
T6792 204-209 NN denotes study
T6791 196-203 JJ denotes present
T6790 192-195 DT denotes the
T6789 189-191 IN denotes In
T6788 187-188 . denotes .
T6787 180-187 NN denotes process
T6786 167-179 NN denotes inflammation
T6785 163-166 DT denotes the
T6784 153-162 VB denotes aggravate
T6783 150-152 CC denotes or
T6782 143-149 VB denotes induce
T6781 140-142 TO denotes to
T6780 129-139 NN denotes gelatinase
T6779 119-128 JJ denotes important
T6778 116-118 DT denotes an
T6777 113-115 VBZ denotes is
T6776 108-112 NNP denotes MMP9
T6775 101-107 NNP denotes Injury
T6774 93-100 NNP denotes Scratch
T6773 87-92 IN denotes after
T6772 76-86 NNP denotes Astrocytes
T6771 67-75 NNP denotes Knockout
T6770 62-66 NNP denotes Nrf2
T6769 59-61 IN denotes in
T6768 50-58 VBN denotes Enhanced
T6767 42-49 RB denotes Greatly
T6766 37-41 VBD denotes Were
T6765 32-36 NNP denotes MMP9
T6764 29-31 IN denotes of
T6763 20-28 NN denotes Activity
T6762 16-19 CC denotes and
T6761 5-15 NN denotes Expression
T6760 3-4 . denotes .
T6759 0-3 CD denotes 3.4
T6915 772-773 -LRB- denotes (
T6914 768-771 NNP denotes TBI
T6913 765-767 NNP denotes WT
T6912 759-764 NN denotes group
T6911 755-758 IN denotes for
T6910 749-754 CD denotes 0.048
T6909 747-748 CD denotes ±
T6908 742-746 CD denotes 1.13
T6907 738-741 CC denotes and
T6906 734-737 NNP denotes TBI
T6885 621-622 . denotes .
T6884 620-621 -RRB- denotes )
T6883 619-620 -RRB- denotes )
T6882 618-619 LS denotes e
T6881 617-618 -LRB- denotes (
T6880 616-617 CD denotes 3
T6879 612-615 CC denotes and
T6878 610-611 -RRB- denotes )
T6877 609-610 DT denotes a
T6876 608-609 -LRB- denotes (
T6875 607-608 CD denotes 3
T6874 599-606 NNS denotes Figures
T6873 598-599 -LRB- denotes (
T6872 596-597 -RRB- denotes )
T6905 731-733 NNP denotes KO
T6904 725-730 NN denotes group
T6903 721-724 IN denotes for
T6902 715-720 CD denotes 0.076
T6901 713-714 CD denotes ±
T6900 708-712 CD denotes 1.44
T6899 705-707 IN denotes as
T6898 703-704 , denotes ,
T6897 699-703 NN denotes blot
T6896 691-698 JJ denotes western
T6895 688-690 IN denotes by
T6894 682-687 NN denotes level
T6893 674-681 NN denotes protein
T6892 669-673 CD denotes MMP9
T6891 666-668 IN denotes in
T6890 655-665 VBN denotes discovered
T6889 650-654 RB denotes also
T6888 646-649 VBD denotes was
T6887 635-645 NN denotes difference
T6886 623-634 JJ denotes Significant
T6952 931-932 VBD denotes <
T6951 929-930 NNP denotes P
T6950 927-928 , denotes ,
T6949 922-927 CD denotes 3.388
T6948 920-921 CD denotes ±
T6947 914-919 CD denotes 76.32
T6946 907-913 IN denotes versus
T6945 901-906 CD denotes 6.343
T6944 899-900 CD denotes ±
T6943 892-898 CD denotes 101.76
T6942 891-892 -LRB- denotes (
T6941 887-890 RB denotes too
T6940 883-886 NNP denotes TBI
T6939 880-882 NNP denotes WT
T6938 874-879 NN denotes group
T6937 871-873 IN denotes in
T6936 866-870 DT denotes that
T6935 861-865 IN denotes than
T6934 857-860 NNP denotes TBI
T6933 854-856 NNP denotes KO
T6932 848-853 NN denotes group
T6931 845-847 IN denotes in
T6930 836-844 NN denotes activity
T6929 831-835 JJ denotes MMP9
T6928 824-830 JJR denotes higher
T6927 815-823 VBD denotes revealed
T6926 804-814 NN denotes zymography
T6925 795-803 JJ denotes Gelatine
T6924 793-794 . denotes .
T6923 792-793 -RRB- denotes )
T6922 791-792 CD denotes 5
T6921 784-790 NN denotes Figure
T6920 783-784 -LRB- denotes (
T6919 781-782 -RRB- denotes )
T6918 777-781 CD denotes 0.01
T6917 775-776 CD denotes <
T6916 773-774 NNP denotes P
R5602 T6765 T6764 pobj MMP9,of
R5603 T6766 T6768 auxpass Were,Enhanced
R5604 T6767 T6768 advmod Greatly,Enhanced
R5605 T6768 T6768 ROOT Enhanced,Enhanced
R5606 T6769 T6768 prep in,Enhanced
R5607 T6770 T6772 compound Nrf2,Astrocytes
R5608 T6771 T6772 compound Knockout,Astrocytes
R5609 T6772 T6769 pobj Astrocytes,in
R5610 T6773 T6777 mark after,is
R5611 T6774 T6776 compound Scratch,MMP9
R5612 T6775 T6776 compound Injury,MMP9
R5613 T6776 T6777 nsubj MMP9,is
R5614 T6777 T6768 advcl is,Enhanced
R5615 T6778 T6780 det an,gelatinase
R5616 T6779 T6780 amod important,gelatinase
R5617 T6780 T6777 attr gelatinase,is
R5618 T6781 T6782 aux to,induce
R5619 T6782 T6780 relcl induce,gelatinase
R5620 T6783 T6782 cc or,induce
R5621 T6784 T6782 conj aggravate,induce
R5622 T6785 T6787 det the,process
R5623 T6786 T6787 compound inflammation,process
R5624 T6787 T6784 dobj process,aggravate
R5625 T6788 T6768 punct .,Enhanced
R5626 T6789 T6795 prep In,elevated
R5627 T6790 T6792 det the,study
R5628 T6791 T6792 amod present,study
R5629 T6792 T6789 pobj study,In
R5630 T6793 T6795 punct ",",elevated
R5631 T6794 T6795 nsubj we,elevated
R5632 T6795 T6795 ROOT elevated,elevated
R5633 T6796 T6797 det the,mRNA
R5634 T6797 T6795 dobj mRNA,elevated
R5635 T6798 T6797 punct ",",mRNA
R5636 T6799 T6800 compound protein,levels
R5637 T6800 T6797 conj levels,mRNA
R5638 T6801 T6800 punct ",",levels
R5639 T6802 T6800 cc and,levels
R5640 T6803 T6800 conj activity,levels
R5641 T6804 T6803 prep of,activity
R5642 T6805 T6804 pobj MMP9,of
R5643 T6806 T6803 prep in,activity
R5644 T6807 T6806 pobj astrocytes,in
R5645 T6808 T6795 prep at,elevated
R5646 T6809 T6810 nummod 24,h
R5647 T6810 T6808 pobj h,at
R5648 T6811 T6795 prep after,elevated
R5649 T6812 T6813 compound scratch,injury
R5650 T6813 T6811 pobj injury,after
R5651 T6814 T6813 prep by,injury
R5652 T6815 T6814 pobj RT-PCR,by
R5653 T6816 T6815 punct ",",RT-PCR
R5654 T6817 T6818 amod western,blot
R5655 T6818 T6815 appos blot,RT-PCR
R5656 T6819 T6815 punct ",",RT-PCR
R5657 T6820 T6815 cc and,RT-PCR
R5658 T6821 T6822 compound gelatine,zymography
R5659 T6822 T6813 conj zymography,injury
R5660 T6823 T6795 punct .,elevated
R5661 T6824 T6828 nsubjpass Expression,elevated
R5662 T6825 T6824 prep of,Expression
R5663 T6826 T6825 pobj MMP9,of
R5664 T6827 T6828 auxpass was,elevated
R5665 T6828 T6828 ROOT elevated,elevated
R5666 T6829 T6828 prep after,elevated
R5667 T6830 T6831 compound scratch,injury
R5668 T6831 T6829 pobj injury,after
R5669 T6832 T6831 prep in,injury
R5670 T6833 T6832 pobj WT,in
R5671 T6834 T6833 cc and,WT
R5672 T6835 T6833 conj KO,WT
R5673 T6836 T6828 npadvmod astrocytes,elevated
R5674 T6837 T6828 prep as,elevated
R5675 T6838 T6837 prep compared,as
R5676 T6839 T6838 prep with,compared
R5677 T6840 T6842 poss their,counterparts
R5678 T6841 T6842 amod sham,counterparts
R5679 T6842 T6839 pobj counterparts,with
R5680 T6843 T6828 punct .,elevated
R5681 T6844 T6846 det The,level
R5682 T6845 T6846 amod mRNA,level
R5683 T6846 T6849 nsubj level,was
R5684 T6847 T6846 prep of,level
R5685 T6848 T6847 pobj MMP9,of
R5686 T6849 T6849 ROOT was,was
R5687 T6850 T6849 acomp higher,was
R5688 T6851 T6849 prep in,was
R5689 T6852 T6854 compound group,TBI
R5690 T6853 T6854 compound KO,TBI
R5691 T6854 T6851 pobj TBI,in
R5692 T6855 T6849 prep than,was
R5693 T6856 T6855 prep in,than
R5761 T6924 T6890 punct .,discovered
R5762 T6925 T6926 compound Gelatine,zymography
R5763 T6926 T6927 nsubj zymography,revealed
R5764 T6927 T6927 ROOT revealed,revealed
R5765 T6928 T6930 amod higher,activity
R5766 T6929 T6930 compound MMP9,activity
R5767 T6930 T6927 dobj activity,revealed
R5768 T6931 T6930 prep in,activity
R5769 T6932 T6934 compound group,TBI
R5770 T6933 T6934 compound KO,TBI
R5771 T6934 T6931 pobj TBI,in
R5596 T6759 T6759 ROOT 3.4,3.4
R5597 T6760 T6759 punct .,3.4
R5598 T6761 T6768 nsubjpass Expression,Enhanced
R5599 T6762 T6761 cc and,Expression
R5600 T6763 T6761 conj Activity,Expression
R5601 T6764 T6763 prep of,Activity
R5694 T6857 T6859 compound group,TBI
R5695 T6858 T6859 compound WT,TBI
R5696 T6859 T6856 pobj TBI,in
R5697 T6860 T6859 punct (,TBI
R5698 T6861 T6862 nummod 1.36,±
R5699 T6862 T6870 nummod ±,<
R5700 T6863 T6870 dep 0.090,<
R5701 T6864 T6870 prep versus,<
R5702 T6865 T6866 nummod 1.01,±
R5703 T6866 T6867 nummod ±,0.068
R5704 T6867 T6864 pobj 0.068,versus
R5705 T6868 T6870 punct ",",<
R5706 T6869 T6870 nsubj P,<
R5707 T6870 T6859 appos <,TBI
R5708 T6871 T6870 npadvmod 0.01,<
R5709 T6872 T6870 punct ),<
R5710 T6873 T6859 punct (,TBI
R5711 T6874 T6873 dep Figures,(
R5712 T6875 T6874 nummod 3,Figures
R5713 T6876 T6877 punct (,a
R5714 T6877 T6875 parataxis a,3
R5715 T6878 T6877 punct ),a
R5716 T6879 T6875 cc and,3
R5717 T6880 T6875 conj 3,3
R5718 T6881 T6882 punct (,e
R5719 T6882 T6874 parataxis e,Figures
R5720 T6883 T6882 punct ),e
R5721 T6884 T6882 punct ),e
R5722 T6885 T6874 punct .,Figures
R5723 T6886 T6887 amod Significant,difference
R5724 T6887 T6890 nsubjpass difference,discovered
R5725 T6888 T6890 auxpass was,discovered
R5726 T6889 T6890 advmod also,discovered
R5727 T6890 T6890 ROOT discovered,discovered
R5728 T6891 T6890 prep in,discovered
R5729 T6892 T6894 nummod MMP9,level
R5730 T6893 T6894 compound protein,level
R5731 T6894 T6891 pobj level,in
R5732 T6895 T6890 agent by,discovered
R5733 T6896 T6897 amod western,blot
R5734 T6897 T6895 pobj blot,by
R5735 T6898 T6890 punct ",",discovered
R5736 T6899 T6890 prep as,discovered
R5737 T6900 T6901 nummod 1.44,±
R5738 T6901 T6902 compound ±,0.076
R5739 T6902 T6899 pobj 0.076,as
R5740 T6903 T6902 prep for,0.076
R5741 T6904 T6906 compound group,TBI
R5742 T6905 T6906 compound KO,TBI
R5743 T6906 T6903 pobj TBI,for
R5744 T6907 T6902 cc and,0.076
R5745 T6908 T6909 nummod 1.13,±
R5746 T6909 T6902 conj ±,0.076
R5747 T6910 T6909 conj 0.048,±
R5748 T6911 T6910 prep for,0.048
R5749 T6912 T6911 pobj group,for
R5750 T6913 T6914 compound WT,TBI
R5751 T6914 T6912 appos TBI,group
R5752 T6915 T6916 punct (,P
R5753 T6916 T6914 appos P,TBI
R5754 T6917 T6918 compound <,0.01
R5755 T6918 T6916 nummod 0.01,P
R5756 T6919 T6914 punct ),TBI
R5757 T6920 T6921 punct (,Figure
R5758 T6921 T6912 appos Figure,group
R5759 T6922 T6921 nummod 5,Figure
R5760 T6923 T6921 punct ),Figure
R5772 T6935 T6930 prep than,activity
R5773 T6936 T6935 pobj that,than
R5774 T6937 T6936 prep in,that
R5775 T6938 T6940 compound group,TBI
R5776 T6939 T6940 compound WT,TBI
R5777 T6940 T6937 pobj TBI,in
R5778 T6941 T6927 advmod too,revealed
R5779 T6942 T6927 punct (,revealed
R5780 T6943 T6944 nummod 101.76,±
R5781 T6944 T6945 nummod ±,6.343
R5782 T6945 T6927 npadvmod 6.343,revealed
R5783 T6946 T6945 prep versus,6.343
R5784 T6947 T6949 nummod 76.32,3.388
R5785 T6948 T6949 nummod ±,3.388
R5786 T6949 T6946 pobj 3.388,versus
R5787 T6950 T6952 punct ",",<
R5788 T6951 T6952 nsubj P,<
R5789 T6952 T6952 ROOT <,<
R5790 T6953 T6952 npadvmod 0.01,<
R5791 T6954 T6952 punct ),<
R5792 T6955 T6956 punct (,Figure
R5793 T6956 T6952 appos Figure,<
R5794 T6957 T6956 nummod 6,Figure
R5795 T6958 T6956 punct ),Figure
R5796 T6959 T6952 punct .,<

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6758 831-835 Protein denotes MMP9
T6757 669-673 Protein denotes MMP9
T6756 500-504 Protein denotes MMP9
T6755 386-394 Positive_regulation denotes elevated
T6754 363-373 Gene_expression denotes Expression
T6753 377-381 Protein denotes MMP9
T6752 214-222 Positive_regulation denotes elevated
T6751 265-269 Protein denotes MMP9
T6750 108-112 Protein denotes MMP9
T6749 50-58 Positive_regulation denotes Enhanced
T6748 5-15 Gene_expression denotes Expression
T6747 62-66 Protein denotes Nrf2
T6746 32-36 Protein denotes MMP9
R5591 T6746 T6748 themeOf MMP9,Expression
R5592 T6748 T6749 themeOf Expression,Enhanced
R5593 T6751 T6752 themeOf MMP9,elevated
R5594 T6753 T6754 themeOf MMP9,Expression
R5595 T6754 T6755 themeOf Expression,elevated

testone

Id Subject Object Predicate Lexical cue
T6453 363-373 Gene_expression denotes Expression
T6452 831-835 Protein denotes MMP9
T6451 669-673 Protein denotes MMP9
T6450 500-504 Protein denotes MMP9
T6449 377-381 Protein denotes MMP9
T6448 265-269 Protein denotes MMP9
T6447 108-112 Protein denotes MMP9
T6446 32-36 Protein denotes MMP9
R5371 T6449 T6453 themeOf MMP9,Expression

test3

Id Subject Object Predicate Lexical cue
T6465 108-112 Protein denotes MMP9
T6464 67-75 Negative_regulation denotes Knockout
T6463 50-58 Positive_regulation denotes Enhanced
T6462 32-36 Protein denotes MMP9
T6461 5-15 Gene_expression denotes Expression
T6460 831-835 Protein denotes MMP9
T6459 669-673 Protein denotes MMP9
T6458 500-504 Protein denotes MMP9
T6457 377-381 Protein denotes MMP9
T6456 265-269 Protein denotes MMP9
T6455 108-112 Protein denotes MMP9
T6454 32-36 Protein denotes MMP9
T6472 831-835 Protein denotes MMP9
T6471 669-673 Protein denotes MMP9
T6470 500-504 Protein denotes MMP9
T6469 386-394 Positive_regulation denotes elevated
T6468 377-381 Protein denotes MMP9
T6467 363-373 Gene_expression denotes Expression
T6466 265-269 Protein denotes MMP9
R5372 T6461 T6463 themeOf Expression,Enhanced
R5373 T6467 T6469 themeOf Expression,elevated
R5374 T6468 T6467 themeOf MMP9,Expression