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PMC:3317373 / 1307-1893 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22529521-10698075-67992081 475-476 10698075 denotes 1
22529521-16230799-67992082 581-582 16230799 denotes 2
22529521-15680377-67992082 581-582 15680377 denotes 2
22529521-18715849-67992082 581-582 18715849 denotes 2

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T738 584-585 -RRB- denotes ]
T737 581-584 CD denotes 2–4
T736 580-581 -LRB- denotes [
T735 573-579 NN denotes organs
T734 567-572 JJ denotes other
T733 564-566 IN denotes in
T732 559-563 RB denotes also
T731 555-558 CC denotes but
T730 549-554 NN denotes brain
T729 546-548 IN denotes in
T728 541-545 RB denotes only
T727 537-540 RB denotes not
T726 530-536 NN denotes damage
T725 520-529 JJ denotes secondary
T724 517-519 TO denotes to
T723 511-516 VB denotes leads
T722 498-510 NN denotes inflammation
T721 487-497 JJ denotes subsequent
T720 483-486 DT denotes the
T719 479-482 CC denotes And
T718 476-477 -RRB- denotes ]
T717 475-476 CD denotes 1
T716 474-475 -LRB- denotes [
T715 466-473 NN denotes factors
T714 454-465 JJ denotes chemotactic
T713 450-453 CC denotes and
T712 437-449 NN denotes interleukins
T711 434-436 IN denotes as
T710 429-433 JJ denotes such
T709 419-428 NN denotes mediators
T708 412-418 JJ denotes immune
T707 403-411 JJ denotes numerous
T706 400-402 IN denotes of
T705 392-399 NN denotes release
T704 388-391 DT denotes the
T703 385-387 IN denotes as
T702 380-384 RB denotes well
T701 377-379 RB denotes as
T700 375-376 -COMMA- denotes ,
T699 370-375 NN denotes cells
T698 354-369 JJ denotes immunocompetent
T697 345-353 JJ denotes resident
T696 342-344 IN denotes of
T695 331-341 NN denotes activation
T694 327-330 CC denotes and
T693 325-326 -COMMA- denotes ,
T692 320-325 NN denotes cells
T691 314-319 NN denotes blood
T690 303-313 JJ denotes peripheral
T689 300-302 IN denotes of
T688 287-299 NN denotes infiltration
T687 285-286 -COMMA- denotes ,
T686 280-285 NN denotes edema
T685 274-279 NN denotes brain
T684 272-273 -COMMA- denotes ,
T683 271-272 -RRB- denotes )
T682 268-271 NN denotes BBB
T681 267-268 -LRB- denotes (
T680 259-266 NN denotes barrier
T679 247-258 NN denotes blood-brain
T678 244-246 IN denotes of
T677 234-243 NN denotes breakdown
T676 224-233 VB denotes including
T675 222-223 -COMMA- denotes ,
T674 214-222 NN denotes response
T673 201-213 JJ denotes inflammatory
T672 195-200 JJ denotes acute
T671 192-194 DT denotes an
T670 189-191 IN denotes of
T669 178-188 NN denotes initiation
T668 174-177 DT denotes the
T667 165-173 VB denotes involves
T666 155-164 NN denotes mechanism
T665 148-154 NN denotes injury
T664 138-147 JJ denotes secondary
T663 134-137 DT denotes The
T662 122-132 NN denotes mechanisms
T661 120-121 -RRB- denotes )
T660 114-120 NN denotes injury
T659 106-113 VB denotes delayed
T658 103-105 CC denotes or
T657 93-102 JJ denotes secondary
T656 92-93 -LRB- denotes (
T655 83-91 JJ denotes indirect
T654 79-82 CC denotes and
T653 77-78 -RRB- denotes )
T652 71-77 NN denotes injury
T651 63-70 JJ denotes primary
T650 62-63 -LRB- denotes (
T649 55-61 JJ denotes direct
T648 52-54 IN denotes of
T647 45-51 NN denotes result
T646 43-44 DT denotes a
T645 40-42 VB denotes is
T644 33-39 NN denotes injury
T643 23-32 JJ denotes traumatic
T642 13-22 VB denotes following
T641 6-12 NN denotes damage
T640 0-5 NN denotes Brain
R451 T641 T640 arg1Of damage,Brain
R452 T641 T642 arg1Of damage,following
R453 T641 T645 arg1Of damage,is
R454 T644 T642 arg2Of injury,following
R455 T644 T643 arg1Of injury,traumatic
R456 T647 T645 arg2Of result,is
R457 T647 T646 arg1Of result,a
R458 T647 T648 arg1Of result,of
R459 T649 T650 arg1Of direct,(
R460 T649 T654 arg1Of direct,and
R461 T652 T650 arg2Of injury,(
R462 T652 T651 arg1Of injury,primary
R463 T653 T650 arg3Of ),(
R464 T655 T654 arg2Of indirect,and
R465 T655 T656 arg1Of indirect,(
R466 T660 T656 arg2Of injury,(
R467 T660 T657 arg1Of injury,secondary
R468 T660 T658 arg1Of injury,or
R469 T660 T659 arg2Of injury,delayed
R470 T661 T656 arg3Of ),(
R471 T662 T648 arg2Of mechanisms,of
R472 T662 T649 arg1Of mechanisms,direct
R473 T662 T655 arg1Of mechanisms,indirect
R474 T666 T663 arg1Of mechanism,The
R475 T666 T664 arg1Of mechanism,secondary
R476 T666 T665 arg1Of mechanism,injury
R477 T666 T667 arg1Of mechanism,involves
R478 T669 T667 arg2Of initiation,involves
R479 T669 T668 arg1Of initiation,the
R480 T669 T670 arg1Of initiation,of
R481 T669 T675 arg1Of initiation,","
R482 T669 T676 arg1Of initiation,including
R483 T674 T670 arg2Of response,of
R484 T674 T671 arg1Of response,an
R485 T674 T672 arg1Of response,acute
R486 T674 T673 arg1Of response,inflammatory
R487 T677 T676 arg2Of breakdown,including
R488 T677 T678 arg1Of breakdown,of
R489 T680 T679 arg1Of barrier,blood-brain
R490 T680 T681 arg1Of barrier,(
R491 T680 T684 arg1Of barrier,","
R492 T682 T681 arg2Of BBB,(
R493 T683 T681 arg3Of ),(
R494 T684 T687 arg1Of ",",","
R495 T686 T684 arg2Of edema,","
R496 T686 T685 arg1Of edema,brain
R497 T687 T694 arg1Of ",",and
R498 T688 T687 arg2Of infiltration,","
R499 T688 T689 arg1Of infiltration,of
R500 T692 T689 arg2Of cells,of
R501 T692 T690 arg1Of cells,peripheral
R502 T692 T691 arg1Of cells,blood
R503 T694 T693 arg1Of and,","
R504 T694 T703 arg1Of and,as
R505 T695 T694 arg2Of activation,and
R506 T695 T696 arg1Of activation,of
R507 T699 T696 arg2Of cells,of
R508 T699 T697 arg1Of cells,resident
R509 T699 T698 arg1Of cells,immunocompetent
R510 T703 T678 arg2Of as,of
R511 T703 T700 arg1Of as,","
R512 T703 T701 arg1Of as,as
R513 T703 T702 arg1Of as,well
R514 T705 T703 arg2Of release,as
R515 T705 T704 arg1Of release,the
R516 T705 T706 arg1Of release,of
R517 T709 T706 arg2Of mediators,of
R518 T709 T707 arg1Of mediators,numerous
R519 T709 T708 arg1Of mediators,immune
R520 T709 T711 arg1Of mediators,as
R521 T711 T710 arg1Of as,such
R522 T712 T713 arg1Of interleukins,and
R523 T713 T711 arg2Of and,as
R524 T715 T713 arg2Of factors,and
R525 T715 T714 arg1Of factors,chemotactic
R526 T715 T716 arg1Of factors,[
R527 T717 T716 arg2Of 1,[
R528 T718 T716 arg3Of ],[
R529 T722 T720 arg1Of inflammation,the
R530 T722 T721 arg1Of inflammation,subsequent
R531 T722 T723 arg1Of inflammation,leads
R532 T723 T719 arg1Of leads,And
R533 T723 T724 arg1Of leads,to
R534 T723 T729 arg1Of leads,in
R535 T723 T733 arg1Of leads,in
R536 T726 T724 arg2Of damage,to
R537 T726 T725 arg1Of damage,secondary
R538 T728 T727 arg1Of only,not
R539 T729 T731 arg1Of in,but
R540 T730 T729 arg2Of brain,in
R541 T731 T728 arg1Of but,only
R542 T731 T732 arg1Of but,also
R543 T733 T731 arg2Of in,but
R544 T735 T729 arg3Of organs,in
R545 T735 T733 arg2Of organs,in
R546 T735 T734 arg1Of organs,other
R547 T735 T736 arg1Of organs,[
R548 T737 T736 arg2Of 2–4,[
R549 T738 T736 arg3Of ],[

UBERON-AE

Id Subject Object Predicate Lexical cue
T619 573-579 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organs
T618 247-266 http://purl.obolibrary.org/obo/UBERON_0000120 denotes blood-brain barrier
T617 314-319 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T616 247-252 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T612 549-554 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T611 274-279 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T610 253-258 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T609 0-5 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain

GO-BP

Id Subject Object Predicate Lexical cue
T638 320-341 http://purl.obolibrary.org/obo/GO_0001775 denotes cells, and activation
T637 314-341 http://purl.obolibrary.org/obo/GO_1903708 denotes blood cells, and activation
T636 234-243 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown
T632 498-510 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T631 201-222 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response

GO-CC

Id Subject Object Predicate Lexical cue
T906 370-375 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T905 320-325 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T622 479-586 Sentence denotes And the subsequent inflammation leads to secondary damage not only in brain but also in other organs [2–4].
T621 134-478 Sentence denotes The secondary injury mechanism involves the initiation of an acute inflammatory response, including breakdown of blood-brain barrier (BBB), brain edema, infiltration of peripheral blood cells, and activation of resident immunocompetent cells, as well as the release of numerous immune mediators such as interleukins and chemotactic factors [1].
T620 0-133 Sentence denotes Brain damage following traumatic injury is a result of direct (primary injury) and indirect (secondary or delayed injury) mechanisms.
T15 0-133 Sentence denotes Brain damage following traumatic injury is a result of direct (primary injury) and indirect (secondary or delayed injury) mechanisms.
T16 134-478 Sentence denotes The secondary injury mechanism involves the initiation of an acute inflammatory response, including breakdown of blood-brain barrier (BBB), brain edema, infiltration of peripheral blood cells, and activation of resident immunocompetent cells, as well as the release of numerous immune mediators such as interleukins and chemotactic factors [1].
T17 479-586 Sentence denotes And the subsequent inflammation leads to secondary damage not only in brain but also in other organs [2–4].

ICD10

Id Subject Object Predicate Lexical cue
T901 148-154 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T900 114-120 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T899 71-77 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T898 33-39 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1207 300-325 Entity denotes of peripheral blood cells
T1199 437-449 Protein denotes interleukins
T1197 354-375 Entity denotes immunocompetent cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1019 585-586 . denotes .
T1018 584-585 NNP denotes ]
T1017 583-584 CD denotes 4
T1016 581-582 CD denotes 2
T1015 580-581 VBP denotes [
T1014 573-579 NNS denotes organs
T1013 567-572 JJ denotes other
T1012 564-566 IN denotes in
T982 388-391 DT denotes the
T981 385-387 IN denotes as
T980 380-384 RB denotes well
T979 377-379 RB denotes as
T978 375-376 , denotes ,
T977 370-375 NNS denotes cells
T976 354-369 JJ denotes immunocompetent
T975 345-353 NN denotes resident
T974 342-344 IN denotes of
T973 331-341 NN denotes activation
T972 327-330 CC denotes and
T971 325-326 , denotes ,
T970 320-325 NNS denotes cells
T969 314-319 NN denotes blood
T968 303-313 JJ denotes peripheral
T967 300-302 IN denotes of
T966 287-299 NN denotes infiltration
T965 285-286 , denotes ,
T964 280-285 NN denotes edema
T963 274-279 NN denotes brain
T962 272-273 , denotes ,
T961 271-272 -RRB- denotes )
T960 268-271 NNP denotes BBB
T959 267-268 -LRB- denotes (
T958 259-266 NN denotes barrier
T957 247-258 JJ denotes blood-brain
T956 244-246 IN denotes of
T955 234-243 NN denotes breakdown
T954 224-233 VBG denotes including
T953 222-223 , denotes ,
T952 214-222 NN denotes response
T951 201-213 JJ denotes inflammatory
T950 195-200 JJ denotes acute
T949 192-194 DT denotes an
T948 189-191 IN denotes of
T947 178-188 NN denotes initiation
T946 174-177 DT denotes the
T945 165-173 VBZ denotes involves
T944 155-164 NN denotes mechanism
T943 148-154 NN denotes injury
T942 138-147 JJ denotes secondary
T941 134-137 DT denotes The
T940 132-133 . denotes .
T939 122-132 NNS denotes mechanisms
T938 120-121 -RRB- denotes )
T937 114-120 NN denotes injury
T936 106-113 JJ denotes delayed
T935 103-105 CC denotes or
T934 93-102 JJ denotes secondary
T933 92-93 -LRB- denotes (
T932 83-91 JJ denotes indirect
T931 79-82 CC denotes and
T1011 559-563 RB denotes also
T1010 555-558 CC denotes but
T1009 549-554 NN denotes brain
T1008 546-548 IN denotes in
T1007 541-545 RB denotes only
T1006 537-540 RB denotes not
T1005 530-536 NN denotes damage
T1004 520-529 JJ denotes secondary
T1003 517-519 TO denotes to
T1002 511-516 VBZ denotes leads
T1001 498-510 NN denotes inflammation
T1000 487-497 JJ denotes subsequent
T999 483-486 DT denotes the
T998 479-482 CC denotes And
T997 477-478 . denotes .
T996 476-477 NNP denotes ]
T995 475-476 CD denotes 1
T994 474-475 VBP denotes [
T993 466-473 NNS denotes factors
T992 454-465 JJ denotes chemotactic
T991 450-453 CC denotes and
T990 437-449 NNS denotes interleukins
T989 434-436 IN denotes as
T988 429-433 JJ denotes such
T987 419-428 NNS denotes mediators
T986 412-418 JJ denotes immune
T985 403-411 JJ denotes numerous
T984 400-402 IN denotes of
T983 392-399 NN denotes release
T930 77-78 -RRB- denotes )
T929 71-77 NN denotes injury
T928 63-70 JJ denotes primary
T927 62-63 -LRB- denotes (
T926 55-61 JJ denotes direct
T925 52-54 IN denotes of
T924 45-51 NN denotes result
T923 43-44 DT denotes a
T922 40-42 VBZ denotes is
T921 33-39 NN denotes injury
T920 23-32 JJ denotes traumatic
T919 13-22 VBG denotes following
T918 6-12 NN denotes damage
T917 0-5 NN denotes Brain
R714 T922 T922 ROOT is,is
R715 T923 T924 det a,result
R716 T924 T922 attr result,is
R717 T925 T924 prep of,result
R718 T926 T929 amod direct,injury
R719 T927 T929 punct (,injury
R720 T928 T929 amod primary,injury
R721 T929 T939 nmod injury,mechanisms
R722 T930 T929 punct ),injury
R723 T931 T929 cc and,injury
R724 T932 T937 amod indirect,injury
R725 T933 T937 punct (,injury
R726 T934 T937 amod secondary,injury
R727 T935 T934 cc or,secondary
R728 T936 T934 conj delayed,secondary
R729 T937 T929 conj injury,injury
R730 T938 T937 punct ),injury
R731 T939 T925 pobj mechanisms,of
R732 T940 T922 punct .,is
R733 T941 T944 det The,mechanism
R734 T942 T944 amod secondary,mechanism
R735 T943 T944 compound injury,mechanism
R736 T944 T945 nsubj mechanism,involves
R737 T945 T945 ROOT involves,involves
R738 T946 T947 det the,initiation
R739 T947 T945 dobj initiation,involves
R740 T948 T947 prep of,initiation
R741 T949 T952 det an,response
R742 T950 T952 amod acute,response
R743 T951 T952 amod inflammatory,response
R744 T952 T948 pobj response,of
R745 T953 T947 punct ",",initiation
R746 T954 T947 prep including,initiation
R747 T955 T954 pobj breakdown,including
R748 T956 T955 prep of,breakdown
R749 T957 T958 amod blood-brain,barrier
R750 T958 T956 pobj barrier,of
R751 T959 T960 punct (,BBB
R752 T960 T955 parataxis BBB,breakdown
R753 T961 T960 punct ),BBB
R754 T962 T955 punct ",",breakdown
R755 T963 T964 compound brain,edema
R756 T964 T955 conj edema,breakdown
R757 T965 T964 punct ",",edema
R758 T966 T964 conj infiltration,edema
R759 T967 T966 prep of,infiltration
R760 T968 T970 amod peripheral,cells
R761 T969 T970 compound blood,cells
R762 T970 T967 pobj cells,of
R763 T971 T966 punct ",",infiltration
R764 T972 T966 cc and,infiltration
R765 T973 T966 conj activation,infiltration
R766 T974 T973 prep of,activation
R767 T975 T977 amod resident,cells
R768 T976 T977 amod immunocompetent,cells
R769 T977 T974 pobj cells,of
R770 T978 T966 punct ",",infiltration
R771 T979 T981 advmod as,as
R772 T980 T981 advmod well,as
R773 T981 T955 cc as,breakdown
R774 T982 T983 det the,release
R775 T983 T947 conj release,initiation
R776 T984 T983 prep of,release
R777 T985 T987 amod numerous,mediators
R778 T986 T987 amod immune,mediators
R779 T987 T984 pobj mediators,of
R780 T988 T989 amod such,as
R781 T989 T987 prep as,mediators
R782 T990 T989 pobj interleukins,as
R783 T991 T990 cc and,interleukins
R784 T992 T993 amod chemotactic,factors
R785 T993 T990 conj factors,interleukins
R786 T994 T945 conj [,involves
R787 T995 T996 nummod 1,]
R788 T996 T994 dobj ],[
R789 T997 T945 punct .,involves
R790 T998 T1002 cc And,leads
R791 T999 T1001 det the,inflammation
R792 T1000 T1001 amod subsequent,inflammation
R793 T1001 T1002 nsubj inflammation,leads
R794 T1002 T1002 ROOT leads,leads
R795 T1003 T1002 prep to,leads
R796 T1004 T1005 amod secondary,damage
R797 T1005 T1003 pobj damage,to
R798 T1006 T1008 preconj not,in
R799 T1007 T1006 advmod only,not
R800 T1008 T1005 prep in,damage
R801 T1009 T1008 pobj brain,in
R802 T1010 T1008 cc but,in
R803 T1011 T1010 advmod also,but
R804 T1012 T1008 conj in,in
R805 T1013 T1014 amod other,organs
R806 T1014 T1012 pobj organs,in
R807 T1015 T1008 pobj [,in
R808 T1016 T1015 nummod 2,[
R809 T1017 T1018 nummod 4,]
R810 T1018 T1015 appos ],[
R811 T1019 T1002 punct .,leads
R709 T917 T918 compound Brain,damage
R710 T918 T922 nsubj damage,is
R711 T919 T918 acl following,damage
R712 T920 T921 amod traumatic,injury
R713 T921 T919 dobj injury,following