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PMC:3317373 / 10973-11138 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4496 143-145 TO denotes to
T4495 138-142 NN denotes MMP9
T4494 134-137 DT denotes the
T4493 127-133 VB denotes enable
T4492 124-126 TO denotes to
T4491 119-123 NN denotes 37°C
T4490 116-118 IN denotes at
T4489 114-115 NN denotes h
T4488 111-113 CD denotes 40
T4487 107-110 IN denotes for
T4486 100-106 NN denotes buffer
T4485 90-99 NN denotes substrate
T4484 87-89 IN denotes in
T4483 77-86 VB denotes incubated
T4482 72-76 RB denotes then
T4481 68-71 CC denotes and
T4480 62-67 NN denotes X-100
T4479 55-61 NN denotes Triton
T4478 53-54 NN denotes %
T4477 50-53 CD denotes 2.5
T4476 47-49 IN denotes in
T4475 36-46 NN denotes incubation
T4474 33-35 IN denotes by
T4473 23-32 VB denotes renatured
T4472 18-22 VB denotes were
T4471 9-17 NN denotes proteins
T4470 5-8 DT denotes the
T4469 0-4 RB denotes Then
T4499 157-164 NN denotes gelatin
T4498 153-156 DT denotes the
T4497 146-152 VB denotes cleave
R3786 T4471 T4470 arg1Of proteins,the
R3787 T4471 T4472 arg1Of proteins,were
R3788 T4471 T4473 arg2Of proteins,renatured
R3789 T4471 T4483 arg2Of proteins,incubated
R3790 T4473 T4474 arg1Of renatured,by
R3791 T4473 T4481 arg1Of renatured,and
R3792 T4475 T4474 arg2Of incubation,by
R3793 T4475 T4476 arg1Of incubation,in
R3794 T4477 T4478 arg1Of 2.5,%
R3795 T4480 T4476 arg2Of X-100,in
R3796 T4480 T4477 arg1Of X-100,2.5
R3797 T4480 T4479 arg1Of X-100,Triton
R3798 T4481 T4469 arg1Of and,Then
R3799 T4481 T4472 arg2Of and,were
R3800 T4483 T4481 arg2Of incubated,and
R3801 T4483 T4482 arg1Of incubated,then
R3802 T4483 T4484 arg1Of incubated,in
R3803 T4483 T4487 arg1Of incubated,for
R3804 T4483 T4490 arg1Of incubated,at
R3805 T4483 T4492 modOf incubated,to
R3806 T4486 T4484 arg2Of buffer,in
R3807 T4486 T4485 arg1Of buffer,substrate
R3808 T4489 T4487 arg2Of h,for
R3809 T4489 T4488 arg1Of h,40
R3810 T4491 T4490 arg2Of 37°C,at
R3811 T4493 T4492 arg1Of enable,to
R3812 T4495 T4493 arg2Of MMP9,enable
R3813 T4495 T4494 arg1Of MMP9,the
R3814 T4495 T4497 arg1Of MMP9,cleave
R3815 T4497 T4493 arg3Of cleave,enable
R3816 T4497 T4496 arg1Of cleave,to
R3817 T4499 T4497 arg2Of gelatin,cleave
R3818 T4499 T4498 arg1Of gelatin,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4388 138-142 Protein denotes MMP9

sentences

Id Subject Object Predicate Lexical cue
T4382 0-165 Sentence denotes Then the proteins were renatured by incubation in 2.5% Triton X-100 and then incubated in substrate buffer for 40 h at 37°C to enable the MMP9 to cleave the gelatin.
T113 0-165 Sentence denotes Then the proteins were renatured by incubation in 2.5% Triton X-100 and then incubated in substrate buffer for 40 h at 37°C to enable the MMP9 to cleave the gelatin.

simple1

Id Subject Object Predicate Lexical cue
T4550 138-142 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4731 138-142 Protein denotes MMP9

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4556 146-152 Protein_catabolism denotes cleave
T4554 138-142 Protein denotes MMP9
R3872 T4554 T4556 themeOf MMP9,cleave

DLUT931

Id Subject Object Predicate Lexical cue
T4552 138-142 Protein denotes MMP9

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4751 90-99 Entity denotes substrate
T4747 50-67 Entity denotes 2.5% Triton X-100
T4745 134-142 Protein denotes the MMP9
T4735 5-17 Protein denotes the proteins

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4652 53-54 NN denotes %
T4651 50-53 CD denotes 2.5
T4650 47-49 IN denotes in
T4649 36-46 NN denotes incubation
T4648 33-35 IN denotes by
T4647 23-32 VBN denotes renatured
T4646 18-22 VBD denotes were
T4645 9-17 NNS denotes proteins
T4644 5-8 DT denotes the
T4643 0-4 RB denotes Then
T4676 164-165 . denotes .
T4675 157-164 NN denotes gelatin
T4674 153-156 DT denotes the
T4673 146-152 VB denotes cleave
T4672 143-145 TO denotes to
T4671 138-142 NNP denotes MMP9
T4670 134-137 DT denotes the
T4669 127-133 VB denotes enable
T4668 124-126 TO denotes to
T4667 122-123 NNP denotes C
T4666 121-122 CD denotes °
T4665 119-121 CD denotes 37
T4664 116-118 IN denotes at
T4663 114-115 NN denotes h
T4662 111-113 CD denotes 40
T4661 107-110 IN denotes for
T4660 100-106 NN denotes buffer
T4659 90-99 JJ denotes substrate
T4658 87-89 IN denotes in
T4657 77-86 VBD denotes incubated
T4656 72-76 RB denotes then
T4655 68-71 CC denotes and
T4654 62-67 NNP denotes X-100
T4653 55-61 NNP denotes Triton
R3956 T4643 T4647 advmod Then,renatured
R3957 T4644 T4645 det the,proteins
R3958 T4645 T4647 nsubjpass proteins,renatured
R3959 T4646 T4647 auxpass were,renatured
R3960 T4647 T4647 ROOT renatured,renatured
R3961 T4648 T4647 agent by,renatured
R3962 T4649 T4648 pobj incubation,by
R3963 T4650 T4647 prep in,renatured
R3975 T4662 T4663 nummod 40,h
R3976 T4663 T4661 pobj h,for
R3977 T4664 T4657 prep at,incubated
R3978 T4665 T4666 nummod 37,°
R3979 T4666 T4664 pobj °,at
R3980 T4667 T4657 conj C,incubated
R3981 T4668 T4669 aux to,enable
R3982 T4669 T4657 advcl enable,incubated
R3983 T4670 T4671 det the,MMP9
R3984 T4671 T4669 dobj MMP9,enable
R3985 T4672 T4673 aux to,cleave
R3986 T4673 T4669 xcomp cleave,enable
R3987 T4674 T4675 det the,gelatin
R3988 T4675 T4673 dobj gelatin,cleave
R3989 T4676 T4647 punct .,renatured
R3964 T4651 T4652 nummod 2.5,%
R3965 T4652 T4654 compound %,X-100
R3966 T4653 T4654 compound Triton,X-100
R3967 T4654 T4650 pobj X-100,in
R3968 T4655 T4647 cc and,renatured
R3969 T4656 T4657 advmod then,incubated
R3970 T4657 T4647 conj incubated,renatured
R3971 T4658 T4657 prep in,incubated
R3972 T4659 T4660 compound substrate,buffer
R3973 T4660 T4658 pobj buffer,in
R3974 T4661 T4660 prep for,buffer

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4559 138-142 Protein denotes MMP9

testone

Id Subject Object Predicate Lexical cue
T4372 138-142 Protein denotes MMP9

test3

Id Subject Object Predicate Lexical cue
T4376 138-142 Protein denotes MMP9
T4374 138-142 Protein denotes MMP9