PMC:3312845 / 968-1163
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T151","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T152","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T153","span":{"begin":151,"end":154},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T459","span":{"begin":151,"end":154},"obj":"http://www.uniprot.org/uniprot/Q04206"},{"id":"T463","span":{"begin":151,"end":154},"obj":"http://www.uniprot.org/uniprot/P21579"},{"id":"T469","span":{"begin":11,"end":14},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T470","span":{"begin":48,"end":51},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T475","span":{"begin":11,"end":16},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T170","span":{"begin":162,"end":177},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T181","span":{"begin":104,"end":109},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
sentences
{"project":"sentences","denotations":[{"id":"T111","span":{"begin":35,"end":132},"obj":"Sentence"},{"id":"T11","span":{"begin":35,"end":132},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
simple1
{"project":"simple1","denotations":[{"id":"T193","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T192","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T191","span":{"begin":11,"end":16},"obj":"Protein"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T915","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T916","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T917","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T926","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T927","span":{"begin":182,"end":191},"obj":"Positive_regulation"},{"id":"T928","span":{"begin":162,"end":177},"obj":"Phosphorylation"}],"relations":[{"id":"R647","pred":"themeOf","subj":"T916","obj":"T926"},{"id":"R648","pred":"themeOf","subj":"T917","obj":"T928"},{"id":"R651","pred":"themeOf","subj":"T928","obj":"T927"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T768","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T758","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T757","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T756","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T770","span":{"begin":182,"end":191},"obj":"Positive_regulation"},{"id":"T769","span":{"begin":162,"end":177},"obj":"Phosphorylation"}],"relations":[{"id":"R556","pred":"themeOf","subj":"T757","obj":"T768"},{"id":"R557","pred":"themeOf","subj":"T758","obj":"T769"},{"id":"R564","pred":"themeOf","subj":"T769","obj":"T770"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T798","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T799","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T800","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T811","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T812","span":{"begin":162,"end":177},"obj":"Phosphorylation"},{"id":"T813","span":{"begin":182,"end":191},"obj":"Positive_regulation"}],"relations":[{"id":"R625","pred":"themeOf","subj":"T799","obj":"T811"},{"id":"R626","pred":"themeOf","subj":"T800","obj":"T812"},{"id":"R634","pred":"themeOf","subj":"T812","obj":"T813"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T986","span":{"begin":146,"end":191},"obj":"Positive_regulation"},{"id":"T985","span":{"begin":146,"end":177},"obj":"Phosphorylation"},{"id":"T983","span":{"begin":48,"end":75},"obj":"Gene_expression"},{"id":"T978","span":{"begin":92,"end":131},"obj":"Entity"},{"id":"T975","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T964","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T939","span":{"begin":151,"end":161},"obj":"Entity"},{"id":"T943","span":{"begin":151,"end":161},"obj":"Protein"},{"id":"T951","span":{"begin":121,"end":131},"obj":"Entity"}],"relations":[{"id":"R600","pred":"themeOf","subj":"T964","obj":"T983"},{"id":"R605","pred":"themeOf","subj":"T985","obj":"T986"},{"id":"R656","pred":"partOf","subj":"T939","obj":"T943"},{"id":"R657","pred":"siteOf","subj":"T939","obj":"T985"},{"id":"R658","pred":"themeOf","subj":"T943","obj":"T985"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T659","span":{"begin":192,"end":194},"obj":"IN"},{"id":"T658","span":{"begin":182,"end":191},"obj":"VBN"},{"id":"T657","span":{"begin":178,"end":181},"obj":"VBD"},{"id":"T656","span":{"begin":162,"end":177},"obj":"NN"},{"id":"T655","span":{"begin":151,"end":161},"obj":"JJ"},{"id":"T654","span":{"begin":146,"end":150},"obj":"RB"},{"id":"T653","span":{"begin":144,"end":145},"obj":","},{"id":"T652","span":{"begin":136,"end":144},"obj":"NN"},{"id":"T651","span":{"begin":133,"end":135},"obj":"IN"},{"id":"T650","span":{"begin":131,"end":132},"obj":"."},{"id":"T649","span":{"begin":121,"end":131},"obj":"NNS"},{"id":"T648","span":{"begin":118,"end":120},"obj":"IN"},{"id":"T647","span":{"begin":113,"end":117},"obj":"RB"},{"id":"T646","span":{"begin":110,"end":112},"obj":"RB"},{"id":"T645","span":{"begin":104,"end":109},"obj":"NNS"},{"id":"T644","span":{"begin":92,"end":103},"obj":"JJ"},{"id":"T643","span":{"begin":89,"end":91},"obj":"IN"},{"id":"T642","span":{"begin":80,"end":88},"obj":"VBN"},{"id":"T641","span":{"begin":76,"end":79},"obj":"VBD"},{"id":"T640","span":{"begin":65,"end":75},"obj":"NN"},{"id":"T639","span":{"begin":56,"end":64},"obj":"NN"},{"id":"T638","span":{"begin":52,"end":55},"obj":"NN"},{"id":"T637","span":{"begin":48,"end":51},"obj":"NNP"},{"id":"T636","span":{"begin":46,"end":47},"obj":","},{"id":"T635","span":{"begin":38,"end":46},"obj":"NN"},{"id":"T634","span":{"begin":35,"end":37},"obj":"IN"},{"id":"T633","span":{"begin":33,"end":34},"obj":"."},{"id":"T632","span":{"begin":17,"end":33},"obj":"NN"},{"id":"T631","span":{"begin":11,"end":16},"obj":"JJ"},{"id":"T630","span":{"begin":4,"end":10},"obj":"JJ"}],"relations":[{"id":"R453","pred":"advmod","subj":"T647","obj":"T648"},{"id":"R454","pred":"cc","subj":"T648","obj":"T645"},{"id":"R455","pred":"conj","subj":"T649","obj":"T645"},{"id":"R456","pred":"punct","subj":"T650","obj":"T642"},{"id":"R457","pred":"prep","subj":"T651","obj":"T658"},{"id":"R458","pred":"pobj","subj":"T652","obj":"T651"},{"id":"R459","pred":"punct","subj":"T653","obj":"T658"},{"id":"R436","pred":"amod","subj":"T630","obj":"T632"},{"id":"R437","pred":"amod","subj":"T631","obj":"T632"},{"id":"R440","pred":"prep","subj":"T634","obj":"T642"},{"id":"R441","pred":"pobj","subj":"T635","obj":"T634"},{"id":"R442","pred":"punct","subj":"T636","obj":"T642"},{"id":"R443","pred":"compound","subj":"T637","obj":"T640"},{"id":"R444","pred":"compound","subj":"T638","obj":"T640"},{"id":"R445","pred":"compound","subj":"T639","obj":"T640"},{"id":"R446","pred":"nsubjpass","subj":"T640","obj":"T642"},{"id":"R447","pred":"auxpass","subj":"T641","obj":"T642"},{"id":"R448","pred":"ROOT","subj":"T642","obj":"T642"},{"id":"R449","pred":"prep","subj":"T643","obj":"T642"},{"id":"R450","pred":"amod","subj":"T644","obj":"T645"},{"id":"R451","pred":"pobj","subj":"T645","obj":"T643"},{"id":"R452","pred":"advmod","subj":"T646","obj":"T648"},{"id":"R460","pred":"advmod","subj":"T654","obj":"T656"},{"id":"R461","pred":"amod","subj":"T655","obj":"T656"},{"id":"R462","pred":"nsubjpass","subj":"T656","obj":"T658"},{"id":"R463","pred":"auxpass","subj":"T657","obj":"T658"},{"id":"R464","pred":"ROOT","subj":"T658","obj":"T658"},{"id":"R465","pred":"prep","subj":"T659","obj":"T658"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T859","span":{"begin":182,"end":191},"obj":"Positive_regulation"},{"id":"T858","span":{"begin":182,"end":191},"obj":"Positive_regulation"},{"id":"T857","span":{"begin":162,"end":177},"obj":"Phosphorylation"},{"id":"T856","span":{"begin":162,"end":177},"obj":"Phosphorylation"},{"id":"T855","span":{"begin":155,"end":161},"obj":"Protein"},{"id":"T854","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T853","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T852","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T851","span":{"begin":11,"end":16},"obj":"Protein"}],"relations":[{"id":"R568","pred":"themeOf","subj":"T852","obj":"T853"},{"id":"R569","pred":"themeOf","subj":"T854","obj":"T856"},{"id":"R570","pred":"themeOf","subj":"T855","obj":"T857"},{"id":"R571","pred":"themeOf","subj":"T856","obj":"T858"},{"id":"R572","pred":"themeOf","subj":"T857","obj":"T859"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
testone
{"project":"testone","denotations":[{"id":"T23","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T24","span":{"begin":48,"end":64},"obj":"Protein"},{"id":"T25","span":{"begin":151,"end":154},"obj":"Protein"},{"id":"T40","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T41","span":{"begin":162,"end":177},"obj":"Phosphorylation"},{"id":"T42","span":{"begin":182,"end":191},"obj":"Positive_regulation"}],"relations":[{"id":"R4","pred":"themeOf","subj":"T24","obj":"T40"},{"id":"R5","pred":"themeOf","subj":"T25","obj":"T41"},{"id":"R12","pred":"themeOf","subj":"T41","obj":"T42"}],"text":"wed strong TNF-α immunoreactivity. In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes. In addition, only p65-Thr435 phosphorylation was increased in "}
test3
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