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PMC:3312845 / 960-1175 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T373 203-214 JJ denotes endothelial
T372 200-202 IN denotes in
T371 190-199 VB denotes increased
T370 186-189 VB denotes was
T369 170-185 NN denotes phosphorylation
T368 159-169 NN denotes p65-Thr435
T367 154-158 RB denotes only
T366 152-153 -COMMA- denotes ,
T365 144-152 NN denotes addition
T364 141-143 IN denotes In
T363 129-139 NN denotes astrocytes
T362 126-128 IN denotes as
T361 121-125 RB denotes well
T360 118-120 RB denotes as
T359 112-117 NN denotes cells
T358 100-111 JJ denotes endothelial
T357 97-99 IN denotes in
T356 88-96 VB denotes detected
T355 84-87 VB denotes was
T354 73-83 NN denotes expression
T353 64-72 NN denotes receptor
T352 60-63 NN denotes p75
T351 56-59 NN denotes TNF
T350 54-55 -COMMA- denotes ,
T349 46-54 NN denotes addition
T348 43-45 IN denotes In
T347 25-41 NN denotes immunoreactivity
T346 19-24 NN denotes TNF-α
T345 12-18 JJ denotes strong
T344 5-11 VB denotes showed
R175 T347 T344 arg2Of immunoreactivity,showed
R176 T347 T345 arg1Of immunoreactivity,strong
R177 T347 T346 arg1Of immunoreactivity,TNF-α
R178 T349 T348 arg2Of addition,In
R179 T354 T351 arg1Of expression,TNF
R180 T354 T352 arg1Of expression,p75
R181 T354 T353 arg1Of expression,receptor
R182 T354 T355 arg1Of expression,was
R183 T354 T356 arg2Of expression,detected
R184 T356 T348 arg1Of detected,In
R185 T356 T350 arg1Of detected,","
R186 T356 T355 arg2Of detected,was
R187 T356 T357 arg1Of detected,in
R188 T359 T358 arg1Of cells,endothelial
R189 T359 T362 arg1Of cells,as
R190 T362 T357 arg2Of as,in
R191 T362 T360 arg1Of as,as
R192 T362 T361 arg1Of as,well
R193 T363 T362 arg2Of astrocytes,as
R194 T365 T364 arg2Of addition,In
R195 T369 T367 arg1Of phosphorylation,only
R196 T369 T368 arg1Of phosphorylation,p65-Thr435
R197 T369 T370 arg1Of phosphorylation,was
R198 T369 T371 arg2Of phosphorylation,increased
R199 T371 T364 arg1Of increased,In
R200 T371 T366 arg1Of increased,","
R201 T371 T370 arg2Of increased,was
R202 T371 T372 arg1Of increased,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T151 19-24 Protein denotes TNF-α
T152 56-72 Protein denotes TNF p75 receptor
T153 159-162 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T459 159-162 http://www.uniprot.org/uniprot/Q04206 denotes p65
T463 159-162 http://www.uniprot.org/uniprot/P21579 denotes p65
T469 19-22 http://www.uniprot.org/uniprot/P01375 denotes TNF
T470 56-59 http://www.uniprot.org/uniprot/P01375 denotes TNF
T475 19-24 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

GO-BP

Id Subject Object Predicate Lexical cue
T170 170-185 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T181 112-117 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T111 43-140 Sentence denotes In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes.
T11 43-140 Sentence denotes In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes.

simple1

Id Subject Object Predicate Lexical cue
T193 159-162 Protein denotes p65
T192 56-72 Protein denotes TNF p75 receptor
T191 19-24 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T915 19-24 Protein denotes TNF-α
T916 56-72 Protein denotes TNF p75 receptor
T917 159-162 Protein denotes p65
T926 73-83 Gene_expression denotes expression
T927 190-199 Positive_regulation denotes increased
T928 170-185 Phosphorylation denotes phosphorylation
R647 T916 T926 themeOf TNF p75 receptor,expression
R648 T917 T928 themeOf p65,phosphorylation
R651 T928 T927 themeOf phosphorylation,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T768 73-83 Gene_expression denotes expression
T758 159-162 Protein denotes p65
T757 56-72 Protein denotes TNF p75 receptor
T756 19-24 Protein denotes TNF-α
T770 190-199 Positive_regulation denotes increased
T769 170-185 Phosphorylation denotes phosphorylation
R556 T757 T768 themeOf TNF p75 receptor,expression
R557 T758 T769 themeOf p65,phosphorylation
R564 T769 T770 themeOf phosphorylation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T798 19-24 Protein denotes TNF-α
T799 56-72 Protein denotes TNF p75 receptor
T800 159-162 Protein denotes p65
T811 73-83 Gene_expression denotes expression
T812 170-185 Phosphorylation denotes phosphorylation
T813 190-199 Positive_regulation denotes increased
R625 T799 T811 themeOf TNF p75 receptor,expression
R626 T800 T812 themeOf p65,phosphorylation
R634 T812 T813 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T986 154-199 Positive_regulation denotes only p65-Thr435 phosphorylation was increased
T985 154-185 Phosphorylation denotes only p65-Thr435 phosphorylation
T983 56-83 Gene_expression denotes TNF p75 receptor expression
T978 100-139 Entity denotes endothelial cells as well as astrocytes
T975 19-24 Protein denotes TNF-α
T964 56-72 Protein denotes TNF p75 receptor
T939 159-169 Entity denotes p65-Thr435
T943 159-169 Protein denotes p65-Thr435
T951 129-139 Entity denotes astrocytes
R600 T964 T983 themeOf TNF p75 receptor,TNF p75 receptor expression
R605 T985 T986 themeOf only p65-Thr435 phosphorylation,only p65-Thr435 phosphorylation was increased
R656 T939 T943 partOf p65-Thr435,p65-Thr435
R657 T939 T985 siteOf p65-Thr435,only p65-Thr435 phosphorylation
R658 T943 T985 themeOf p65-Thr435,only p65-Thr435 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T660 203-214 JJ denotes endothelial
T659 200-202 IN denotes in
T658 190-199 VBN denotes increased
T657 186-189 VBD denotes was
T656 170-185 NN denotes phosphorylation
T655 159-169 JJ denotes p65-Thr435
T654 154-158 RB denotes only
T653 152-153 , denotes ,
T652 144-152 NN denotes addition
T651 141-143 IN denotes In
T650 139-140 . denotes .
T649 129-139 NNS denotes astrocytes
T648 126-128 IN denotes as
T647 121-125 RB denotes well
T646 118-120 RB denotes as
T645 112-117 NNS denotes cells
T644 100-111 JJ denotes endothelial
T643 97-99 IN denotes in
T642 88-96 VBN denotes detected
T641 84-87 VBD denotes was
T640 73-83 NN denotes expression
T639 64-72 NN denotes receptor
T638 60-63 NN denotes p75
T637 56-59 NNP denotes TNF
T636 54-55 , denotes ,
T635 46-54 NN denotes addition
T634 43-45 IN denotes In
T633 41-42 . denotes .
T632 25-41 NN denotes immunoreactivity
T631 19-24 JJ denotes TNF-α
T630 12-18 JJ denotes strong
T629 5-11 VBD denotes showed
R453 T647 T648 advmod well,as
R454 T648 T645 cc as,cells
R455 T649 T645 conj astrocytes,cells
R456 T650 T642 punct .,detected
R457 T651 T658 prep In,increased
R458 T652 T651 pobj addition,In
R459 T653 T658 punct ",",increased
R435 T629 T629 ROOT showed,showed
R436 T630 T632 amod strong,immunoreactivity
R437 T631 T632 amod TNF-α,immunoreactivity
R438 T632 T629 dobj immunoreactivity,showed
R439 T633 T629 punct .,showed
R440 T634 T642 prep In,detected
R441 T635 T634 pobj addition,In
R442 T636 T642 punct ",",detected
R443 T637 T640 compound TNF,expression
R444 T638 T640 compound p75,expression
R445 T639 T640 compound receptor,expression
R446 T640 T642 nsubjpass expression,detected
R447 T641 T642 auxpass was,detected
R448 T642 T642 ROOT detected,detected
R449 T643 T642 prep in,detected
R450 T644 T645 amod endothelial,cells
R451 T645 T643 pobj cells,in
R452 T646 T648 advmod as,as
R460 T654 T656 advmod only,phosphorylation
R461 T655 T656 amod p65-Thr435,phosphorylation
R462 T656 T658 nsubjpass phosphorylation,increased
R463 T657 T658 auxpass was,increased
R464 T658 T658 ROOT increased,increased
R465 T659 T658 prep in,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T859 190-199 Positive_regulation denotes increased
T858 190-199 Positive_regulation denotes increased
T857 170-185 Phosphorylation denotes phosphorylation
T856 170-185 Phosphorylation denotes phosphorylation
T855 163-169 Protein denotes Thr435
T854 159-162 Protein denotes p65
T853 73-83 Gene_expression denotes expression
T852 56-72 Protein denotes TNF p75 receptor
T851 19-24 Protein denotes TNF-α
R568 T852 T853 themeOf TNF p75 receptor,expression
R569 T854 T856 themeOf p65,phosphorylation
R570 T855 T857 themeOf Thr435,phosphorylation
R571 T856 T858 themeOf phosphorylation,increased
R572 T857 T859 themeOf phosphorylation,increased

testone

Id Subject Object Predicate Lexical cue
T23 19-24 Protein denotes TNF-α
T24 56-72 Protein denotes TNF p75 receptor
T25 159-162 Protein denotes p65
T40 73-83 Gene_expression denotes expression
T41 170-185 Phosphorylation denotes phosphorylation
T42 190-199 Positive_regulation denotes increased
R4 T24 T40 themeOf TNF p75 receptor,expression
R5 T25 T41 themeOf p65,phosphorylation
R12 T41 T42 themeOf phosphorylation,increased

test3

Id Subject Object Predicate Lexical cue
T80 190-199 Positive_regulation denotes increased
T79 170-185 Phosphorylation denotes phosphorylation
T78 159-162 Protein denotes p65
T77 73-83 Gene_expression denotes expression
T76 56-72 Protein denotes TNF p75 receptor
T75 19-24 Protein denotes TNF-α
T55 19-24 Protein denotes TNF-α
T56 56-72 Protein denotes TNF p75 receptor
T57 159-162 Protein denotes p65
R22 T76 T77 themeOf TNF p75 receptor,expression
R23 T78 T79 themeOf p65,phosphorylation
R24 T79 T80 themeOf phosphorylation,increased