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PMC:3312845 / 959-1210 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T377 237-243 NN denotes SMI-71
T376 234-236 IN denotes by
T375 222-233 VB denotes accompanied
T374 216-221 NN denotes cells
T373 204-215 JJ denotes endothelial
T372 201-203 IN denotes in
T371 191-200 VB denotes increased
T370 187-190 VB denotes was
T369 171-186 NN denotes phosphorylation
T368 160-170 NN denotes p65-Thr435
T367 155-159 RB denotes only
T366 153-154 -COMMA- denotes ,
T365 145-153 NN denotes addition
T364 142-144 IN denotes In
T363 130-140 NN denotes astrocytes
T362 127-129 IN denotes as
T361 122-126 RB denotes well
T360 119-121 RB denotes as
T359 113-118 NN denotes cells
T358 101-112 JJ denotes endothelial
T357 98-100 IN denotes in
T356 89-97 VB denotes detected
T355 85-88 VB denotes was
T354 74-84 NN denotes expression
T353 65-73 NN denotes receptor
T352 61-64 NN denotes p75
T351 57-60 NN denotes TNF
T350 55-56 -COMMA- denotes ,
T349 47-55 NN denotes addition
T348 44-46 IN denotes In
T347 26-42 NN denotes immunoreactivity
T346 20-25 NN denotes TNF-α
T345 13-19 JJ denotes strong
T344 6-12 VB denotes showed
R175 T347 T344 arg2Of immunoreactivity,showed
R176 T347 T345 arg1Of immunoreactivity,strong
R177 T347 T346 arg1Of immunoreactivity,TNF-α
R178 T349 T348 arg2Of addition,In
R179 T354 T351 arg1Of expression,TNF
R180 T354 T352 arg1Of expression,p75
R181 T354 T353 arg1Of expression,receptor
R182 T354 T355 arg1Of expression,was
R183 T354 T356 arg2Of expression,detected
R184 T356 T348 arg1Of detected,In
R185 T356 T350 arg1Of detected,","
R186 T356 T355 arg2Of detected,was
R187 T356 T357 arg1Of detected,in
R188 T359 T358 arg1Of cells,endothelial
R189 T359 T362 arg1Of cells,as
R190 T362 T357 arg2Of as,in
R191 T362 T360 arg1Of as,as
R192 T362 T361 arg1Of as,well
R193 T363 T362 arg2Of astrocytes,as
R194 T365 T364 arg2Of addition,In
R195 T369 T367 arg1Of phosphorylation,only
R196 T369 T368 arg1Of phosphorylation,p65-Thr435
R197 T369 T370 arg1Of phosphorylation,was
R198 T369 T371 arg2Of phosphorylation,increased
R199 T371 T364 arg1Of increased,In
R200 T371 T366 arg1Of increased,","
R201 T371 T370 arg2Of increased,was
R202 T371 T372 arg1Of increased,in
R203 T374 T372 arg2Of cells,in
R204 T374 T373 arg1Of cells,endothelial
R205 T374 T375 arg2Of cells,accompanied

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T151 20-25 Protein denotes TNF-α
T152 57-73 Protein denotes TNF p75 receptor
T153 160-163 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T459 160-163 http://www.uniprot.org/uniprot/Q04206 denotes p65
T463 160-163 http://www.uniprot.org/uniprot/P21579 denotes p65
T469 20-23 http://www.uniprot.org/uniprot/P01375 denotes TNF
T470 57-60 http://www.uniprot.org/uniprot/P01375 denotes TNF
T475 20-25 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

GO-BP

Id Subject Object Predicate Lexical cue
T170 171-186 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T181 113-118 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T182 216-221 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T111 44-141 Sentence denotes In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes.
T11 44-141 Sentence denotes In addition, TNF p75 receptor expression was detected in endothelial cells as well as astrocytes.

simple1

Id Subject Object Predicate Lexical cue
T193 160-163 Protein denotes p65
T192 57-73 Protein denotes TNF p75 receptor
T191 20-25 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T915 20-25 Protein denotes TNF-α
T916 57-73 Protein denotes TNF p75 receptor
T917 160-163 Protein denotes p65
T926 74-84 Gene_expression denotes expression
T927 191-200 Positive_regulation denotes increased
T928 171-186 Phosphorylation denotes phosphorylation
R647 T916 T926 themeOf TNF p75 receptor,expression
R648 T917 T928 themeOf p65,phosphorylation
R651 T928 T927 themeOf phosphorylation,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T768 74-84 Gene_expression denotes expression
T758 160-163 Protein denotes p65
T757 57-73 Protein denotes TNF p75 receptor
T756 20-25 Protein denotes TNF-α
T770 191-200 Positive_regulation denotes increased
T769 171-186 Phosphorylation denotes phosphorylation
R556 T757 T768 themeOf TNF p75 receptor,expression
R557 T758 T769 themeOf p65,phosphorylation
R564 T769 T770 themeOf phosphorylation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T798 20-25 Protein denotes TNF-α
T799 57-73 Protein denotes TNF p75 receptor
T800 160-163 Protein denotes p65
T811 74-84 Gene_expression denotes expression
T812 171-186 Phosphorylation denotes phosphorylation
T813 191-200 Positive_regulation denotes increased
R625 T799 T811 themeOf TNF p75 receptor,expression
R626 T800 T812 themeOf p65,phosphorylation
R634 T812 T813 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T986 155-200 Positive_regulation denotes only p65-Thr435 phosphorylation was increased
T985 155-186 Phosphorylation denotes only p65-Thr435 phosphorylation
T983 57-84 Gene_expression denotes TNF p75 receptor expression
T978 101-140 Entity denotes endothelial cells as well as astrocytes
T975 20-25 Protein denotes TNF-α
T964 57-73 Protein denotes TNF p75 receptor
T939 160-170 Entity denotes p65-Thr435
T943 160-170 Protein denotes p65-Thr435
T951 130-140 Entity denotes astrocytes
R600 T964 T983 themeOf TNF p75 receptor,TNF p75 receptor expression
R605 T985 T986 themeOf only p65-Thr435 phosphorylation,only p65-Thr435 phosphorylation was increased
R656 T939 T943 partOf p65-Thr435,p65-Thr435
R657 T939 T985 siteOf p65-Thr435,only p65-Thr435 phosphorylation
R658 T943 T985 themeOf p65-Thr435,only p65-Thr435 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T664 237-243 NNP denotes SMI-71
T663 234-236 IN denotes by
T662 222-233 VBN denotes accompanied
T661 216-221 NNS denotes cells
T660 204-215 JJ denotes endothelial
T659 201-203 IN denotes in
T658 191-200 VBN denotes increased
T657 187-190 VBD denotes was
T656 171-186 NN denotes phosphorylation
T655 160-170 JJ denotes p65-Thr435
T654 155-159 RB denotes only
T653 153-154 , denotes ,
T652 145-153 NN denotes addition
T651 142-144 IN denotes In
T650 140-141 . denotes .
T649 130-140 NNS denotes astrocytes
T648 127-129 IN denotes as
T647 122-126 RB denotes well
T646 119-121 RB denotes as
T645 113-118 NNS denotes cells
T644 101-112 JJ denotes endothelial
T643 98-100 IN denotes in
T642 89-97 VBN denotes detected
T641 85-88 VBD denotes was
T640 74-84 NN denotes expression
T639 65-73 NN denotes receptor
T638 61-64 NN denotes p75
T637 57-60 NNP denotes TNF
T636 55-56 , denotes ,
T635 47-55 NN denotes addition
T634 44-46 IN denotes In
T633 42-43 . denotes .
T632 26-42 NN denotes immunoreactivity
T631 20-25 JJ denotes TNF-α
T630 13-19 JJ denotes strong
T629 6-12 VBD denotes showed
R453 T647 T648 advmod well,as
R454 T648 T645 cc as,cells
R455 T649 T645 conj astrocytes,cells
R456 T650 T642 punct .,detected
R457 T651 T658 prep In,increased
R458 T652 T651 pobj addition,In
R459 T653 T658 punct ",",increased
R435 T629 T629 ROOT showed,showed
R436 T630 T632 amod strong,immunoreactivity
R437 T631 T632 amod TNF-α,immunoreactivity
R438 T632 T629 dobj immunoreactivity,showed
R439 T633 T629 punct .,showed
R440 T634 T642 prep In,detected
R441 T635 T634 pobj addition,In
R442 T636 T642 punct ",",detected
R443 T637 T640 compound TNF,expression
R444 T638 T640 compound p75,expression
R445 T639 T640 compound receptor,expression
R446 T640 T642 nsubjpass expression,detected
R447 T641 T642 auxpass was,detected
R448 T642 T642 ROOT detected,detected
R449 T643 T642 prep in,detected
R450 T644 T645 amod endothelial,cells
R451 T645 T643 pobj cells,in
R452 T646 T648 advmod as,as
R460 T654 T656 advmod only,phosphorylation
R461 T655 T656 amod p65-Thr435,phosphorylation
R462 T656 T658 nsubjpass phosphorylation,increased
R463 T657 T658 auxpass was,increased
R464 T658 T658 ROOT increased,increased
R465 T659 T658 prep in,increased
R466 T660 T661 amod endothelial,cells
R467 T661 T659 pobj cells,in
R468 T662 T661 acl accompanied,cells
R469 T663 T662 agent by,accompanied

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T859 191-200 Positive_regulation denotes increased
T858 191-200 Positive_regulation denotes increased
T857 171-186 Phosphorylation denotes phosphorylation
T856 171-186 Phosphorylation denotes phosphorylation
T855 164-170 Protein denotes Thr435
T854 160-163 Protein denotes p65
T853 74-84 Gene_expression denotes expression
T852 57-73 Protein denotes TNF p75 receptor
T851 20-25 Protein denotes TNF-α
R568 T852 T853 themeOf TNF p75 receptor,expression
R569 T854 T856 themeOf p65,phosphorylation
R570 T855 T857 themeOf Thr435,phosphorylation
R571 T856 T858 themeOf phosphorylation,increased
R572 T857 T859 themeOf phosphorylation,increased

testone

Id Subject Object Predicate Lexical cue
T23 20-25 Protein denotes TNF-α
T24 57-73 Protein denotes TNF p75 receptor
T25 160-163 Protein denotes p65
T40 74-84 Gene_expression denotes expression
T41 171-186 Phosphorylation denotes phosphorylation
T42 191-200 Positive_regulation denotes increased
R4 T24 T40 themeOf TNF p75 receptor,expression
R5 T25 T41 themeOf p65,phosphorylation
R12 T41 T42 themeOf phosphorylation,increased

test3

Id Subject Object Predicate Lexical cue
T80 191-200 Positive_regulation denotes increased
T79 171-186 Phosphorylation denotes phosphorylation
T78 160-163 Protein denotes p65
T77 74-84 Gene_expression denotes expression
T76 57-73 Protein denotes TNF p75 receptor
T75 20-25 Protein denotes TNF-α
T55 20-25 Protein denotes TNF-α
T56 57-73 Protein denotes TNF p75 receptor
T57 160-163 Protein denotes p65
R22 T76 T77 themeOf TNF p75 receptor,expression
R23 T78 T79 themeOf p65,phosphorylation
R24 T79 T80 themeOf phosphorylation,increased