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PMC:3312845 / 9421-9802 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4460 41-45 VB denotes were
T4459 33-40 NN denotes animals
T4458 31-32 -COMMA- denotes ,
T4457 30-31 -RRB- denotes )
T4456 25-30 NN denotes point
T4455 20-24 NN denotes time
T4454 15-19 DT denotes each
T4453 11-14 IN denotes for
T4452 9-10 -COMMA- denotes ,
T4451 8-9 CD denotes 5
T4450 6-7 SYM denotes =
T4449 4-5 NN denotes n
T4448 2-3 -COLON- denotes ;
T4447 0-2 NN denotes SE
T4522 366-378 NN denotes infiltration
T4521 363-365 IN denotes by
T4520 349-362 VB denotes cryoprotected
T4519 344-348 VB denotes were
T4518 336-343 NN denotes tissues
T4517 330-335 NN denotes brain
T4516 326-329 DT denotes The
T4515 322-324 NN denotes hr
T4514 320-321 CD denotes 4
T4513 316-319 IN denotes for
T4512 307-315 JJ denotes fixative
T4511 302-306 JJ denotes same
T4510 298-301 DT denotes the
T4509 295-297 IN denotes in
T4508 285-294 VB denotes postfixed
T4507 281-284 CC denotes and
T4506 279-280 -COMMA- denotes ,
T4505 272-279 VB denotes removed
T4504 267-271 VB denotes were
T4503 260-266 NN denotes brains
T4502 256-259 DT denotes The
T4501 253-254 -RRB- denotes )
T4500 251-253 NN denotes MO
T4499 249-250 -COMMA- denotes ,
T4498 244-249 NNP denotes Louis
T4497 240-243 NNP denotes St.
T4496 238-239 -COMMA- denotes ,
T4495 235-238 NNP denotes Co.
T4494 221-234 NNP denotes Sigma-Aldrich
T4493 219-220 -COLON- denotes ;
T4492 215-219 RB denotes i.p.
T4491 213-214 -COMMA- denotes ,
T4490 209-213 NN denotes g/kg
T4489 205-208 CD denotes 1.5
T4488 204-205 -LRB- denotes (
T4487 193-203 NN denotes anesthesia
T4486 184-192 NN denotes urethane
T4485 178-183 IN denotes under
T4484 176-177 -RRB- denotes )
T4483 173-176 CD denotes 7.4
T4482 170-172 NN denotes pH
T4481 168-169 -COMMA- denotes ,
T4480 166-168 NN denotes PB
T4479 165-166 -LRB- denotes (
T4478 158-164 NN denotes buffer
T4477 148-157 NN denotes phosphate
T4476 146-147 NN denotes M
T4475 142-145 CD denotes 0.1
T4474 139-141 IN denotes in
T4473 122-138 NN denotes paraformaldehyde
T4472 120-121 NN denotes %
T4471 119-120 CD denotes 4
T4470 116-118 IN denotes by
T4469 107-115 VB denotes followed
T4468 105-106 -RRB- denotes )
T4467 102-105 NN denotes PBS
T4466 101-102 -LRB- denotes (
T4465 94-100 NN denotes saline
T4464 75-93 JJ denotes phosphate-buffered
T4463 70-74 IN denotes with
T4462 55-69 RB denotes transcardially
T4461 46-54 VB denotes perfused
R3495 T4449 T4448 arg2Of n,;
R3496 T4449 T4450 arg1Of n,=
R3497 T4450 T4451 arg1Of =,5
R3498 T4450 T4452 arg1Of =,","
R3499 T4450 T4453 arg1Of =,for
R3500 T4450 T4458 arg1Of =,","
R3501 T4456 T4453 arg2Of point,for
R3502 T4456 T4454 arg1Of point,each
R3503 T4456 T4455 arg1Of point,time
R3504 T4456 T4457 arg1Of point,)
R3505 T4459 T4458 arg2Of animals,","
R3506 T4461 T4460 arg2Of perfused,were
R3507 T4461 T4462 arg1Of perfused,transcardially
R3508 T4461 T4463 arg1Of perfused,with
R3509 T4465 T4463 arg2Of saline,with
R3510 T4465 T4464 arg1Of saline,phosphate-buffered
R3511 T4465 T4466 arg1Of saline,(
R3512 T4465 T4469 arg2Of saline,followed
R3513 T4467 T4466 arg2Of PBS,(
R3514 T4468 T4466 arg3Of ),(
R3515 T4471 T4472 arg1Of 4,%
R3516 T4473 T4469 arg1Of paraformaldehyde,followed
R3517 T4473 T4470 arg2Of paraformaldehyde,by
R3518 T4473 T4471 arg1Of paraformaldehyde,4
R3519 T4473 T4474 arg1Of paraformaldehyde,in
R3520 T4475 T4476 arg1Of 0.1,M
R3521 T4478 T4474 arg2Of buffer,in
R3522 T4478 T4475 arg1Of buffer,0.1
R3523 T4478 T4477 arg1Of buffer,phosphate
R3524 T4478 T4479 arg1Of buffer,(
R3525 T4478 T4485 arg1Of buffer,under
R3526 T4478 T4488 arg1Of buffer,(
R3527 T4480 T4479 arg2Of PB,(
R3528 T4480 T4481 arg1Of PB,","
R3529 T4482 T4481 arg2Of pH,","
R3530 T4482 T4483 arg1Of pH,7.4
R3531 T4484 T4479 arg3Of ),(
R3532 T4487 T4485 arg2Of anesthesia,under
R3533 T4487 T4486 arg1Of anesthesia,urethane
R3534 T4490 T4489 arg1Of g/kg,1.5
R3535 T4490 T4491 arg1Of g/kg,","
R3536 T4490 T4492 arg1Of g/kg,i.p.
R3537 T4490 T4493 arg1Of g/kg,;
R3538 T4493 T4496 arg1Of ;,","
R3539 T4495 T4493 arg2Of Co.,;
R3540 T4495 T4494 arg1Of Co.,Sigma-Aldrich
R3541 T4496 T4488 arg2Of ",",(
R3542 T4496 T4499 arg1Of ",",","
R3543 T4498 T4496 arg2Of Louis,","
R3544 T4498 T4497 arg1Of Louis,St.
R3545 T4500 T4499 arg2Of MO,","
R3546 T4501 T4488 arg3Of ),(
R3547 T4503 T4502 arg1Of brains,The
R3548 T4503 T4504 arg1Of brains,were
R3549 T4503 T4505 arg2Of brains,removed
R3550 T4503 T4508 arg2Of brains,postfixed
R3551 T4505 T4507 arg1Of removed,and
R3552 T4507 T4504 arg2Of and,were
R3553 T4507 T4506 arg1Of and,","
R3554 T4508 T4507 arg2Of postfixed,and
R3555 T4508 T4509 arg1Of postfixed,in
R3556 T4508 T4513 arg1Of postfixed,for
R3557 T4512 T4509 arg2Of fixative,in
R3558 T4512 T4510 arg1Of fixative,the
R3559 T4512 T4511 arg1Of fixative,same
R3560 T4515 T4513 arg2Of hr,for
R3561 T4515 T4514 arg1Of hr,4
R3562 T4518 T4516 arg1Of tissues,The
R3563 T4518 T4517 arg1Of tissues,brain
R3564 T4518 T4519 arg1Of tissues,were
R3565 T4518 T4520 arg2Of tissues,cryoprotected
R3566 T4520 T4519 arg2Of cryoprotected,were
R3567 T4522 T4520 arg1Of infiltration,cryoprotected
R3568 T4522 T4521 arg2Of infiltration,by

UBERON-AE

Id Subject Object Predicate Lexical cue
T4412 330-335 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T4411 260-266 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brains
T4410 336-343 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

sentences

Id Subject Object Predicate Lexical cue
T4416 256-325 Sentence denotes The brains were removed, and postfixed in the same fixative for 4 hr.
T77 256-325 Sentence denotes The brains were removed, and postfixed in the same fixative for 4 hr.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4739 116-138 Entity denotes by 4% paraformaldehyde
T4738 221-250 Protein denotes Sigma-Aldrich Co., St. Louis,
T4736 184-203 Entity denotes urethane anesthesia
T4735 148-157 Entity denotes phosphate
T4734 75-106 Entity denotes phosphate-buffered saline (PBS)
T4733 4-7 Entity denotes n =
T4732 75-93 Entity denotes phosphate-buffered
T4730 298-324 Entity denotes the same fixative for 4 hr
T4729 166-168 Protein denotes PB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4653 253-254 -RRB- denotes )
T4652 251-253 NNP denotes MO
T4651 249-250 , denotes ,
T4650 244-249 NNP denotes Louis
T4649 240-243 NNP denotes St.
T4648 238-239 , denotes ,
T4647 235-238 NNP denotes Co.
T4646 221-234 NNP denotes Sigma-Aldrich
T4645 219-220 : denotes ;
T4644 215-219 NN denotes i.p.
T4643 213-214 , denotes ,
T4642 209-213 NN denotes g/kg
T4641 205-208 CD denotes 1.5
T4640 204-205 -LRB- denotes (
T4639 193-203 NN denotes anesthesia
T4638 184-192 NN denotes urethane
T4637 178-183 IN denotes under
T4636 176-177 -RRB- denotes )
T4635 173-176 CD denotes 7.4
T4634 170-172 NNP denotes pH
T4633 168-169 , denotes ,
T4632 166-168 NNP denotes PB
T4631 165-166 -LRB- denotes (
T4630 158-164 NN denotes buffer
T4629 148-157 NN denotes phosphate
T4628 146-147 NNP denotes M
T4627 142-145 CD denotes 0.1
T4626 139-141 IN denotes in
T4625 122-138 NN denotes paraformaldehyde
T4624 120-121 NN denotes %
T4623 119-120 CD denotes 4
T4622 116-118 IN denotes by
T4621 107-115 VBN denotes followed
T4620 105-106 -RRB- denotes )
T4619 102-105 NNP denotes PBS
T4618 101-102 -LRB- denotes (
T4617 94-100 NN denotes saline
T4616 75-93 JJ denotes phosphate-buffered
T4615 70-74 IN denotes with
T4614 55-69 RB denotes transcardially
T4613 46-54 JJ denotes perfused
T4612 41-45 VBD denotes were
T4611 33-40 NNS denotes animals
T4610 31-32 , denotes ,
T4609 30-31 -RRB- denotes )
T4608 25-30 NN denotes point
T4607 20-24 NN denotes time
T4606 15-19 DT denotes each
T4605 11-14 IN denotes for
T4604 9-10 , denotes ,
T4603 8-9 CD denotes 5
T4602 6-7 SYM denotes =
T4601 4-5 VB denotes n
T4600 2-3 : denotes ;
T4599 0-2 NNP denotes SE
T4676 366-378 NN denotes infiltration
T4675 363-365 IN denotes by
T4674 349-362 VBN denotes cryoprotected
T4673 344-348 VBD denotes were
T4672 336-343 NNS denotes tissues
T4671 330-335 NN denotes brain
T4670 326-329 DT denotes The
T4669 324-325 . denotes .
T4668 322-324 NN denotes hr
T4667 320-321 CD denotes 4
T4666 316-319 IN denotes for
T4665 307-315 NN denotes fixative
T4664 302-306 JJ denotes same
T4663 298-301 DT denotes the
T4662 295-297 IN denotes in
T4661 285-294 VBD denotes postfixed
T4660 281-284 CC denotes and
T4659 279-280 , denotes ,
T4658 272-279 VBN denotes removed
T4657 267-271 VBD denotes were
T4656 260-266 NNS denotes brains
T4655 256-259 DT denotes The
T4654 254-255 . denotes .
R3649 T4601 T4612 advcl n,were
R3650 T4602 T4603 punct =,5
R3651 T4603 T4601 nummod 5,n
R3652 T4604 T4601 punct ",",n
R3653 T4605 T4601 prep for,n
R3654 T4606 T4607 det each,time
R3655 T4607 T4608 compound time,point
R3656 T4608 T4605 pobj point,for
R3657 T4609 T4601 punct ),n
R3658 T4610 T4612 punct ",",were
R3659 T4611 T4612 nsubj animals,were
R3660 T4612 T4621 auxpass were,followed
R3661 T4613 T4612 acomp perfused,were
R3662 T4614 T4612 advmod transcardially,were
R3663 T4615 T4612 prep with,were
R3664 T4616 T4617 amod phosphate-buffered,saline
R3665 T4617 T4615 pobj saline,with
R3666 T4618 T4619 punct (,PBS
R3667 T4619 T4617 appos PBS,saline
R3668 T4620 T4612 punct ),were
R3669 T4621 T4647 ccomp followed,Co.
R3670 T4622 T4621 agent by,followed
R3671 T4623 T4624 nummod 4,%
R3672 T4624 T4622 pobj %,by
R3673 T4625 T4621 npadvmod paraformaldehyde,followed
R3674 T4626 T4621 prep in,followed
R3675 T4627 T4630 nummod 0.1,buffer
R3676 T4628 T4630 compound M,buffer
R3677 T4629 T4630 compound phosphate,buffer
R3678 T4630 T4626 pobj buffer,in
R3679 T4631 T4632 punct (,PB
R3680 T4632 T4630 appos PB,buffer
R3681 T4633 T4632 punct ",",PB
R3682 T4634 T4632 appos pH,PB
R3683 T4635 T4634 nummod 7.4,pH
R3684 T4636 T4632 punct ),PB
R3685 T4637 T4621 prep under,followed
R3686 T4638 T4639 compound urethane,anesthesia
R3687 T4639 T4637 pobj anesthesia,under
R3688 T4640 T4639 punct (,anesthesia
R3689 T4641 T4642 nummod 1.5,g/kg
R3690 T4642 T4639 appos g/kg,anesthesia
R3691 T4643 T4642 punct ",",g/kg
R3692 T4644 T4642 conj i.p.,g/kg
R3693 T4645 T4647 punct ;,Co.
R3694 T4646 T4647 compound Sigma-Aldrich,Co.
R3695 T4647 T4647 ROOT Co.,Co.
R3696 T4648 T4647 punct ",",Co.
R3697 T4649 T4650 compound St.,Louis
R3698 T4650 T4647 npadvmod Louis,Co.
R3699 T4651 T4647 punct ",",Co.
R3700 T4652 T4647 appos MO,Co.
R3701 T4653 T4647 punct ),Co.
R3702 T4654 T4647 punct .,Co.
R3703 T4655 T4656 det The,brains
R3704 T4656 T4658 nsubjpass brains,removed
R3705 T4657 T4658 auxpass were,removed
R3706 T4658 T4658 ROOT removed,removed
R3707 T4659 T4658 punct ",",removed
R3708 T4660 T4658 cc and,removed
R3709 T4661 T4658 conj postfixed,removed
R3710 T4662 T4661 prep in,postfixed
R3711 T4663 T4665 det the,fixative
R3712 T4664 T4665 amod same,fixative
R3713 T4665 T4662 pobj fixative,in
R3714 T4666 T4661 prep for,postfixed
R3715 T4667 T4668 nummod 4,hr
R3716 T4668 T4666 pobj hr,for
R3717 T4669 T4658 punct .,removed
R3718 T4670 T4672 det The,tissues
R3719 T4671 T4672 compound brain,tissues
R3720 T4672 T4674 nsubjpass tissues,cryoprotected
R3721 T4673 T4674 auxpass were,cryoprotected
R3722 T4674 T4674 ROOT cryoprotected,cryoprotected
R3723 T4675 T4674 agent by,cryoprotected
R3724 T4676 T4675 pobj infiltration,by